Wall clock time and date at job start Tue Mar 31 2020 11:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48496 * 109.46798 * 239.99960 * 3 2 1 5 5 H 1.48499 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46901 * 120.00012 * 3 2 1 7 7 C 1.37874 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99836 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99972 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47166 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47594 * 64.99752 * 12 11 10 14 14 C 1.34894 * 117.00029 * 179.97438 * 13 12 11 15 15 O 1.21621 * 120.00211 * 0.02562 * 14 13 12 16 16 C 1.46472 * 119.99858 * 179.97438 * 14 13 12 17 17 C 1.36642 * 125.98735 * 179.97438 * 16 14 13 18 18 C 1.40366 * 106.70316 * 179.97438 * 17 16 14 19 19 Br 1.89100 * 126.44193 * 180.02562 * 18 17 16 20 20 C 1.35225 * 107.11300 * 0.26471 * 18 17 16 21 21 O 1.33958 * 108.76699 * 359.56988 * 20 18 17 22 22 H 0.96994 * 120.00589 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47260 * 59.99548 * 9 7 2 24 24 H 1.08999 * 109.46916 * 300.00039 * 9 7 2 25 25 H 1.09000 * 109.47369 * 59.99567 * 11 10 9 26 26 H 1.09009 * 109.47007 * 299.99969 * 11 10 9 27 27 H 1.09003 * 109.46761 * 304.99134 * 12 11 10 28 28 H 1.09006 * 109.47034 * 184.99884 * 12 11 10 29 29 H 1.07997 * 126.64875 * 359.97438 * 17 16 14 30 30 H 1.07993 * 125.61509 * 179.73728 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5653 -4.8754 0.0000 12 6 2.6483 -5.9561 0.0006 13 8 3.3987 -5.8886 1.2418 14 6 4.3976 -6.7808 1.4028 15 8 4.6347 -7.5925 0.5287 16 6 5.1975 -6.7711 2.6298 17 6 6.2324 -7.6147 2.9203 18 6 6.7062 -7.2497 4.1901 19 35 8.1347 -8.0564 5.1307 20 6 5.9456 -6.2162 4.6167 21 8 5.0417 -5.9273 3.6712 22 1 -0.4851 0.8399 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 0.9454 -4.9822 -0.8902 26 1 0.9448 -4.9827 0.8898 27 1 3.3224 -5.7955 -0.8408 28 1 2.1824 -6.9374 -0.0893 29 1 6.6123 -8.4085 2.2942 30 1 6.0514 -5.7058 5.5625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838430895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:20 Heat of formation + Delta-G solvation = -112.898401 kcal Electronic energy + Delta-G solvation = -17804.697594 eV Core-core repulsion = 14420.803751 eV Total energy + Delta-G solvation = -3383.893843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.18934 -40.23819 -37.18093 -36.17210 -34.11190 -32.79189 -31.49893 -30.44993 -29.54657 -26.97731 -24.66408 -22.46867 -22.08531 -21.96234 -20.80055 -18.69826 -17.34059 -17.07948 -16.59066 -16.23647 -16.19183 -15.27804 -14.69355 -14.37335 -14.02539 -13.63649 -13.52590 -13.45968 -13.03797 -12.75004 -12.07218 -12.01534 -11.48488 -11.11635 -10.95979 -10.82191 -10.78187 -10.68787 -10.49358 -10.07759 -10.01734 -9.16344 -9.14345 -8.89772 -8.23409 -6.13091 -4.14989 0.50131 1.09745 1.56588 2.06773 2.63249 2.83663 3.31573 3.34052 3.38116 4.23623 4.30096 4.31282 4.66747 4.76555 4.94704 5.11852 5.23421 5.29291 5.38460 5.55685 5.79725 5.85468 5.98619 6.27185 6.31654 7.02848 7.37770 7.54272 7.76446 8.10672 8.49824 8.97085 9.49787 10.98420 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002566 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.964678 B =10910.024246 C =12033.523526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.327 6.327 14 C 0.551 3.449 15 O -0.489 6.489 16 C -0.043 4.043 17 C -0.087 4.087 18 C -0.208 4.208 19 Br -0.002 7.002 20 C 0.054 3.946 21 O -0.129 6.129 22 H 0.265 0.735 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.818 -18.684 11.309 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.242 6.242 14 C 0.395 3.605 15 O -0.380 6.380 16 C -0.094 4.094 17 C -0.108 4.108 18 C -0.289 4.289 19 Br 0.082 6.918 20 C -0.020 4.020 21 O -0.022 6.022 22 H 0.075 0.925 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.191 0.809 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.160 -18.802 11.343 26.128 hybrid contribution -0.142 0.882 -0.241 0.925 sum 14.018 -17.919 11.102 25.315 Atomic orbital electron populations 1.69946 1.06103 1.27343 1.50428 1.24945 0.94990 0.99443 0.95068 0.86379 0.79309 0.81812 0.78890 1.19987 1.21131 1.19966 1.21014 0.94083 0.89307 1.51039 0.91548 1.20240 0.88716 0.83433 0.95538 1.87921 1.35346 1.12593 1.95238 1.22335 0.93109 0.85442 1.00799 1.23377 0.93711 0.99278 0.83535 1.86768 1.42646 1.52722 1.42067 1.19080 0.78733 0.79001 0.83698 1.90944 1.68174 1.38222 1.40624 1.20810 1.02009 0.96718 0.89834 1.21778 0.94200 0.99863 0.94948 1.22115 1.03301 1.04425 0.99017 1.96714 1.41166 1.80671 1.73293 1.24582 0.87769 0.95764 0.93863 1.84341 1.47054 1.47629 1.23201 0.92550 0.97559 0.97448 0.91579 0.93039 0.89976 0.89907 0.80906 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -15.24 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.31 5.69 36.01 0.20 5.52 16 10 O -0.39 -9.44 10.30 -38.79 -0.40 -9.84 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.07 1.14 5.86 37.16 0.22 1.36 16 13 O -0.33 -5.53 10.20 -44.89 -0.46 -5.99 16 14 C 0.55 8.37 7.93 34.05 0.27 8.64 16 15 O -0.49 -7.83 16.66 -19.36 -0.32 -8.15 16 16 C -0.04 -0.56 7.18 -36.84 -0.26 -0.82 16 17 C -0.09 -0.94 10.61 -39.36 -0.42 -1.36 16 18 C -0.21 -1.96 6.58 -39.85 -0.26 -2.22 16 19 Br 0.00 -0.02 34.10 -68.01 -2.32 -2.34 16 20 C 0.05 0.48 12.05 29.66 0.36 0.84 16 21 O -0.13 -1.62 10.67 4.63 0.05 -1.57 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.22 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -33.05 304.27 -6.16 -39.20 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -2.93 Total: -5.90 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.13 Total: -25.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.32 Total: -2.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.05 -6.16 -39.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838430895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.694 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds