Wall clock time and date at job start Tue Mar 31 2020 11:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33814 * 124.50038 * 2 1 4 4 C 1.37520 * 115.10830 * 179.76766 * 3 2 1 5 5 Br 1.89101 * 123.38177 * 180.29297 * 4 3 2 6 6 C 1.36869 * 113.24102 * 0.45018 * 4 3 2 7 7 C 1.46276 * 125.46906 * 179.83525 * 6 4 3 8 8 O 1.21643 * 119.99679 * 359.72578 * 7 6 4 9 9 O 1.34907 * 120.00275 * 179.72089 * 7 6 4 10 10 C 1.42906 * 116.99822 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46752 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99835 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47183 * 60.00274 * 16 14 12 18 18 H 1.48496 * 109.47425 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47216 * 300.00267 * 16 14 12 20 20 S 1.70605 * 124.49859 * 180.02562 * 2 1 3 21 21 H 1.08993 * 109.47072 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46871 * 300.00650 * 1 2 3 23 23 H 1.09004 * 109.46327 * 60.00084 * 1 2 3 24 24 H 1.07999 * 122.44733 * 0.02562 * 3 2 1 25 25 H 1.08993 * 109.47732 * 60.00182 * 10 9 7 26 26 H 1.09000 * 109.47141 * 299.99821 * 10 9 7 27 27 H 1.09000 * 109.47050 * 299.99753 * 11 10 9 28 28 H 1.09001 * 109.46801 * 59.99865 * 11 10 9 29 29 H 0.96992 * 120.00038 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2650 1.1028 0.0000 4 6 3.6218 0.8784 0.0050 5 35 4.9059 2.2665 0.0142 6 6 3.9494 -0.4505 -0.0007 7 6 5.3093 -0.9894 -0.0008 8 8 6.2628 -0.2341 -0.0005 9 8 5.5060 -2.3241 -0.0011 10 6 6.8603 -2.7802 -0.0006 11 6 6.8831 -4.3101 -0.0017 12 6 8.3112 -4.7912 -0.0018 13 1 9.1215 -4.0772 -0.0015 14 6 8.5834 -6.1428 -0.0021 15 7 7.5966 -7.0123 -0.0029 16 14 10.3536 -6.7391 -0.0030 17 1 11.0467 -6.2341 1.2094 18 1 10.3758 -8.2239 -0.0039 19 1 11.0458 -6.2335 -1.2156 20 16 2.4734 -1.4060 -0.0006 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 1.8421 2.0965 0.0004 25 1 7.3683 -2.4096 0.8897 26 1 7.3690 -2.4090 -0.8902 27 1 6.3742 -4.6817 0.8878 28 1 6.3752 -4.6804 -0.8922 29 1 7.7881 -7.9631 -0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838456894.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:34 Heat of formation + Delta-G solvation = -77.664453 kcal Electronic energy + Delta-G solvation = -15793.181054 eV Core-core repulsion = 12853.567940 eV Total energy + Delta-G solvation = -2939.613114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.54668 -39.32314 -37.70421 -35.45735 -33.66369 -32.42363 -31.41569 -28.97278 -26.97849 -24.43903 -23.59454 -22.67752 -20.27250 -19.57710 -18.47411 -17.71777 -17.53023 -17.31846 -16.53848 -15.61535 -15.53959 -14.82794 -14.53347 -14.38522 -14.12762 -13.80349 -13.53075 -13.12402 -13.11637 -12.88526 -12.59983 -12.58534 -12.20599 -11.92584 -11.76310 -11.67209 -11.47295 -11.47179 -10.86507 -10.61252 -9.88866 -9.62353 -8.27437 -6.40580 -0.94840 -0.09196 0.55780 0.96591 0.98251 1.40289 1.44408 1.51310 1.61715 1.62253 2.39686 3.06812 3.58950 3.84578 3.89893 4.19544 4.21772 4.32878 4.61785 4.68665 4.78108 4.85748 4.96814 5.18435 5.23159 5.44647 5.45458 5.71743 6.05639 6.57858 6.72367 7.28905 8.84981 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.020636 B = 0.003564 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.515549 B = 7853.516289 C = 9184.273541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.170 4.170 3 C -0.150 4.150 4 C -0.023 4.023 5 Br -0.006 7.006 6 C -0.285 4.285 7 C 0.519 3.481 8 O -0.506 6.506 9 O -0.355 6.355 10 C 0.091 3.909 11 C 0.034 3.966 12 C -0.551 4.551 13 H 0.064 0.936 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.266 1.266 20 S 0.312 5.688 21 H 0.083 0.917 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.181 0.819 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.414 18.730 0.028 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.291 4.291 3 C -0.179 4.179 4 C -0.121 4.121 5 Br 0.079 6.921 6 C -0.406 4.406 7 C 0.364 3.636 8 O -0.396 6.396 9 O -0.272 6.272 10 C 0.018 3.982 11 C -0.003 4.003 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.564 5.564 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.191 1.191 20 S 0.581 5.419 21 H 0.102 0.898 22 H 0.121 0.879 23 H 0.121 0.879 24 H 0.198 0.802 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.995 17.681 0.029 24.525 hybrid contribution 1.336 0.737 -0.002 1.526 sum -15.659 18.418 0.028 24.175 Atomic orbital electron populations 1.20669 0.83481 1.04974 1.05505 1.24997 1.03948 0.96999 1.03176 1.19864 0.88671 1.02253 1.07160 1.21593 0.95800 0.91066 1.03627 1.96756 1.55493 1.42938 1.96865 1.23435 0.96669 0.97460 1.23044 1.20003 0.88820 0.81214 0.73574 1.90910 1.43249 1.59217 1.46248 1.86150 1.34024 1.23321 1.83691 1.22831 0.77638 0.96735 1.01029 1.18972 0.97056 0.87529 0.96769 1.21333 0.92217 0.92681 1.52674 0.91761 1.25953 1.02483 0.96738 0.94047 1.70083 1.33719 1.02390 1.50254 0.85382 0.78519 0.77165 0.79283 1.19104 1.20341 1.19119 1.83585 0.89800 1.05194 1.63361 0.89765 0.87856 0.87859 0.80183 0.92318 0.92329 0.97394 0.97401 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.33 71.24 0.74 0.12 15 2 C -0.17 -2.64 6.28 24.68 0.15 -2.49 15 3 C -0.15 -2.72 9.88 21.09 0.21 -2.51 15 4 C -0.02 -0.61 6.29 21.78 0.14 -0.47 15 5 Br -0.01 -0.15 31.69 -20.37 -0.65 -0.80 15 6 C -0.29 -8.70 6.45 24.04 0.16 -8.54 15 7 C 0.52 20.11 7.91 69.91 0.55 20.67 15 8 O -0.51 -21.27 14.49 19.37 0.28 -20.99 15 9 O -0.35 -15.11 9.96 -58.22 -0.58 -15.69 15 10 C 0.09 4.25 5.32 71.98 0.38 4.64 15 11 C 0.03 1.85 5.34 29.85 0.16 2.01 15 12 C -0.55 -31.65 9.11 25.60 0.23 -31.42 15 13 H 0.06 3.54 7.74 -2.91 -0.02 3.51 15 14 C 0.01 0.40 5.46 84.65 0.46 0.86 15 15 N -0.93 -55.54 13.29 21.45 0.28 -55.26 15 16 Si 0.97 43.94 29.54 68.60 2.03 45.97 15 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 20 S 0.31 6.95 22.85 -56.49 -1.29 5.66 15 21 H 0.08 0.49 8.11 -2.39 -0.02 0.47 15 22 H 0.10 0.44 8.14 -2.39 -0.02 0.42 15 23 H 0.10 0.44 8.14 -2.38 -0.02 0.42 15 24 H 0.18 2.22 8.06 -2.91 -0.02 2.19 15 25 H 0.06 2.71 8.13 -2.39 -0.02 2.69 15 26 H 0.06 2.70 8.13 -2.39 -0.02 2.69 15 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -68.41 296.54 4.43 -63.98 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 1.17 Total: -5.72 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.18 Total: -17.15 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.30 Total: -36.67 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.29 Total: 5.66 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.65 Total: -0.80 kcal Total: -68.41 4.43 -63.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838456894.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.681 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds