Wall clock time and date at job start Tue Mar 31 2020 11:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99771 * 2 1 4 4 H 1.48493 * 109.47596 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47237 * 300.00337 * 3 2 1 6 6 H 1.48502 * 109.47135 * 59.99896 * 3 2 1 7 7 C 1.37878 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47378 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47493 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00217 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47294 * 179.97438 * 12 11 10 14 14 C 1.38599 * 120.41782 * 104.99361 * 13 12 11 15 15 C 1.38746 * 118.42953 * 180.02562 * 14 13 12 16 16 Br 1.89102 * 120.41587 * 179.97438 * 15 14 13 17 17 C 1.38285 * 119.17247 * 0.02562 * 15 14 13 18 18 N 1.31869 * 120.76381 * 359.97438 * 17 15 14 19 19 C 1.31977 * 121.71965 * 359.97438 * 18 17 15 20 20 Cl 1.73604 * 119.62559 * 180.02562 * 19 18 17 21 21 H 0.96995 * 120.00810 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47153 * 60.00423 * 9 7 2 23 23 H 1.09005 * 109.47218 * 300.00667 * 9 7 2 24 24 H 1.08999 * 109.47233 * 60.00210 * 10 9 7 25 25 H 1.09003 * 109.46744 * 300.00120 * 10 9 7 26 26 H 1.00907 * 110.99373 * 303.95379 * 11 10 9 27 27 H 1.09000 * 109.47372 * 59.99827 * 12 11 10 28 28 H 1.09003 * 109.46817 * 299.99689 * 12 11 10 29 29 H 1.08005 * 120.78921 * 0.05391 * 14 13 12 30 30 H 1.07996 * 119.61888 * 179.72339 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5111 -4.9343 -0.0012 12 6 2.4356 -6.0758 -0.0006 13 6 1.6477 -7.3604 -0.0006 14 6 1.5448 -8.1205 -1.1550 15 6 0.8087 -9.2957 -1.1087 16 35 0.6309 -10.3754 -2.6509 17 6 0.2058 -9.6670 0.0791 18 7 0.3248 -8.9191 1.1587 19 6 1.0178 -7.7959 1.1517 20 17 1.1393 -6.8534 2.6046 21 1 -0.4851 0.8399 0.0004 22 1 0.6243 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 0.8895 25 1 2.8721 -3.6042 -0.8906 26 1 0.8744 -4.9845 0.7801 27 1 3.0630 -6.0348 0.8899 28 1 3.0642 -6.0347 -0.8901 29 1 2.0266 -7.8057 -2.0689 30 1 -0.3726 -10.5780 0.1222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842695989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:14 Heat of formation + Delta-G solvation = 1.711202 kcal Electronic energy + Delta-G solvation = -15757.698032 eV Core-core repulsion = 12851.775950 eV Total energy + Delta-G solvation = -2905.922082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59988 -38.00859 -37.62031 -35.33959 -34.30649 -33.58550 -31.16616 -30.40370 -27.41287 -25.37545 -24.84594 -22.83024 -22.43362 -18.66480 -18.51800 -18.26635 -16.98590 -16.40993 -16.30516 -15.95367 -15.37479 -15.20319 -14.59963 -14.35096 -14.15560 -13.69992 -13.36652 -13.18150 -12.91244 -12.83139 -12.46800 -12.38828 -12.09042 -11.93750 -11.56099 -11.45621 -11.30658 -10.88319 -10.83025 -10.56203 -9.93214 -9.36687 -8.19270 -6.30642 -0.54973 -0.14156 0.25735 0.68109 1.41882 1.41992 1.55316 2.21767 2.41792 3.11661 3.14632 3.38578 3.51109 3.57625 3.60024 4.11457 4.18563 4.51465 4.58611 4.62503 4.67565 4.82012 5.07130 5.07919 5.45166 5.66536 5.77224 6.07704 6.21631 6.34442 6.39974 6.87134 7.38862 8.93137 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.002918 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.999792 B = 9594.195789 C =10521.473097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.692 5.692 12 C 0.097 3.903 13 C -0.108 4.108 14 C -0.016 4.016 15 C -0.145 4.145 16 Br -0.006 7.006 17 C 0.147 3.853 18 N -0.487 5.487 19 C 0.174 3.826 20 Cl -0.025 7.025 21 H 0.263 0.737 22 H -0.005 1.005 23 H -0.013 1.013 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.335 0.665 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.175 0.825 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -25.246 -3.647 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.323 5.323 12 C -0.032 4.032 13 C -0.112 4.112 14 C -0.044 4.044 15 C -0.227 4.227 16 Br 0.079 6.921 17 C -0.013 4.013 18 N -0.198 5.198 19 C 0.010 3.990 20 Cl 0.003 6.997 21 H 0.072 0.928 22 H 0.014 0.986 23 H 0.006 0.994 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.153 0.847 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.193 0.807 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.994 -25.712 -3.986 26.191 hybrid contribution 0.648 1.612 0.857 1.937 sum 3.642 -24.101 -3.129 24.574 Atomic orbital electron populations 1.70116 1.07880 1.27701 1.51582 1.25983 0.95734 1.03420 0.94714 0.85373 0.79157 0.78669 0.77676 1.18331 1.20421 1.20586 1.21640 0.93655 0.92048 1.50615 0.91788 1.18935 0.94390 0.92444 0.95001 1.21826 0.95597 0.87479 0.99539 1.60661 1.19850 1.01647 1.50175 1.20937 0.93295 0.85564 1.03430 1.20594 1.00119 0.98371 0.92135 1.21767 0.93686 0.90621 0.98352 1.23126 1.05001 0.98742 0.95817 1.96812 1.97161 1.65626 1.32484 1.23197 0.94714 0.98374 0.84976 1.67190 1.16638 1.04970 1.31015 1.21862 0.96152 0.92151 0.88808 1.98435 1.96172 1.68900 1.36155 0.92810 0.98623 0.99439 0.95795 0.91156 0.84725 0.92818 0.87578 0.80739 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.57 5.23 29.85 0.16 1.73 16 10 C 0.08 3.39 5.62 86.30 0.49 3.87 16 11 N -0.69 -23.75 6.49 -517.94 -3.36 -27.12 16 12 C 0.10 2.48 5.26 85.56 0.45 2.93 16 13 C -0.11 -2.56 5.44 -19.75 -0.11 -2.67 16 14 C -0.02 -0.32 9.57 22.48 0.22 -0.10 16 15 C -0.15 -2.58 6.25 22.40 0.14 -2.44 16 16 Br -0.01 -0.08 33.74 -20.37 -0.69 -0.77 16 17 C 0.15 2.74 10.94 84.70 0.93 3.67 16 18 N -0.49 -11.90 10.34 -186.62 -1.93 -13.83 16 19 C 0.17 4.50 7.19 84.70 0.61 5.11 16 20 Cl -0.03 -0.68 26.57 -2.72 -0.07 -0.75 16 21 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 22 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 23 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.33 11.96 7.32 -89.69 -0.66 11.31 16 27 H 0.05 1.34 7.59 -2.39 -0.02 1.32 16 28 H 0.11 2.33 8.00 -2.39 -0.02 2.31 16 29 H 0.18 2.67 8.05 -2.91 -0.02 2.64 16 30 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -64.93 298.99 0.34 -64.59 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.51 Total: 6.38 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 3.57 Total: -17.77 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.01 Total: -97.71 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.07 Total: -0.75 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.69 Total: -0.77 kcal Total: -64.93 0.34 -64.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842695989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.298 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds