Wall clock time and date at job start Tue Mar 31 2020 12:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47259 * 2 1 4 4 C 1.36937 * 119.99587 * 275.32103 * 3 2 1 5 5 H 1.07997 * 120.00292 * 44.89185 * 4 3 2 6 6 C 1.38815 * 119.99228 * 224.89686 * 4 3 2 7 7 N 1.31613 * 120.00803 * 10.81861 * 6 4 3 8 8 Si 1.86807 * 119.99601 * 190.82177 * 6 4 3 9 9 H 1.48498 * 109.47086 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47122 * 119.99916 * 8 6 4 11 11 H 1.48505 * 109.46872 * 239.99937 * 8 6 4 12 12 C 1.46501 * 120.00118 * 95.31643 * 3 2 1 13 13 C 1.50696 * 109.46748 * 270.00125 * 12 3 2 14 14 C 1.38604 * 120.41836 * 105.00451 * 13 12 3 15 15 C 1.38753 * 118.42539 * 180.02562 * 14 13 12 16 16 Br 1.89099 * 120.41025 * 179.97438 * 15 14 13 17 17 C 1.38272 * 119.17240 * 359.97438 * 15 14 13 18 18 N 1.31869 * 120.77141 * 0.02562 * 17 15 14 19 19 C 1.31974 * 121.71585 * 359.97438 * 18 17 15 20 20 Cl 1.73600 * 119.62628 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47229 * 60.00120 * 1 2 3 22 22 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46980 * 299.99920 * 1 2 3 24 24 H 1.08994 * 109.47540 * 239.99633 * 2 1 3 25 25 H 1.09001 * 109.47410 * 119.99425 * 2 1 3 26 26 H 0.96997 * 120.00660 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47107 * 150.00035 * 12 3 2 28 28 H 1.09004 * 109.47178 * 30.00012 * 12 3 2 29 29 H 1.07995 * 120.78603 * 0.03481 * 14 13 12 30 30 H 1.08006 * 119.61162 * 179.72560 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 1.3521 2.0207 -1.9151 6 6 3.2857 2.8096 -1.4340 7 7 4.3340 2.6957 -0.6465 8 14 3.3356 3.9757 -2.8925 9 1 2.0397 3.9197 -3.6156 10 1 3.5752 5.3600 -2.4115 11 1 4.4318 3.5738 -3.8103 12 6 2.3734 2.0327 1.2633 13 6 1.1613 2.7276 1.8280 14 6 0.4815 2.1862 2.9078 15 6 -0.6295 2.8603 3.3941 16 35 -1.5990 2.1718 4.8644 17 6 -1.0188 4.0417 2.7902 18 7 -0.3481 4.5279 1.7642 19 6 0.7129 3.9140 1.2752 20 17 1.5557 4.6030 -0.0771 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 5.1324 3.2174 -0.8231 27 1 3.1618 2.7641 1.0859 28 1 2.7257 1.2833 1.9721 29 1 0.8089 1.2618 3.3599 30 1 -1.8852 4.5700 3.1602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843392123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:49 Heat of formation + Delta-G solvation = 51.139580 kcal Electronic energy + Delta-G solvation = -17284.864563 eV Core-core repulsion = 14381.085856 eV Total energy + Delta-G solvation = -2903.778707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.89354 -36.23189 -35.64095 -32.82444 -32.16957 -31.90840 -29.41821 -28.65093 -26.00382 -23.94059 -23.07199 -21.64125 -20.27356 -17.17129 -16.63285 -16.49996 -15.17376 -14.47482 -14.37424 -13.83549 -13.70135 -13.29814 -13.01390 -12.55748 -12.46075 -11.65785 -11.56659 -11.39117 -11.18425 -10.95935 -10.74701 -10.50285 -10.43438 -10.24532 -10.16305 -9.98977 -9.86824 -9.27929 -9.18209 -8.42643 -8.20628 -6.61842 -5.90401 -3.53873 1.11470 1.47818 1.61105 2.56909 3.28275 3.37576 3.40871 3.89330 4.36281 4.78545 4.99507 5.17769 5.28830 5.33739 5.47356 5.94086 5.97596 6.07605 6.10495 6.30567 6.33677 6.55288 6.70592 6.73885 6.84233 7.07366 7.42385 7.75143 8.01406 8.46539 9.06896 9.63953 10.25214 11.09753 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.005228 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.948687 B = 5354.955184 C = 5985.045527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 N -0.570 5.570 4 C -0.246 4.246 5 H 0.058 0.942 6 C 0.036 3.964 7 N -0.882 5.882 8 Si 0.862 3.138 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.175 3.825 13 C -0.103 4.103 14 C -0.049 4.049 15 C -0.149 4.149 16 Br -0.052 7.052 17 C 0.119 3.881 18 N -0.480 5.480 19 C 0.194 3.806 20 Cl 0.011 6.989 21 H 0.049 0.951 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.258 0.742 27 H 0.117 0.883 28 H 0.042 0.958 29 H 0.141 0.859 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -1.198 10.274 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 N -0.288 5.288 4 C -0.376 4.376 5 H 0.076 0.924 6 C -0.165 4.165 7 N -0.523 5.523 8 Si 0.691 3.309 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.048 3.952 13 C -0.111 4.111 14 C -0.077 4.077 15 C -0.231 4.231 16 Br 0.032 6.968 17 C -0.040 4.040 18 N -0.191 5.191 19 C 0.030 3.970 20 Cl 0.040 6.960 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.061 0.939 29 H 0.159 0.841 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.132 -0.572 10.242 13.734 hybrid contribution 0.353 0.188 -0.758 0.857 sum -8.779 -0.384 9.485 12.930 Atomic orbital electron populations 1.22335 1.00086 0.99116 1.01129 1.20904 0.91479 0.86727 0.99138 1.43670 1.75630 1.07943 1.01565 1.18938 0.98879 1.25499 0.94333 0.92418 1.25253 0.94687 0.99837 0.96752 1.69779 1.03002 1.41214 1.38345 0.86740 0.78690 0.81510 0.83996 1.19321 1.20758 1.20677 1.20167 0.91241 0.97107 0.86732 1.22150 1.02131 0.93606 0.93223 1.21418 0.92344 0.99063 0.94882 1.22843 1.00578 1.00523 0.99145 1.96643 1.73402 1.86295 1.40414 1.22429 0.98448 0.91986 0.91164 1.67250 1.06990 1.33753 1.11155 1.22058 0.91366 0.91354 0.92224 1.98483 1.72868 1.85402 1.39281 0.93230 0.94345 0.94127 0.93166 0.94597 0.93199 0.86562 0.93917 0.84092 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 10.21 37.15 0.38 -2.61 16 2 C 0.14 2.83 6.44 -4.04 -0.03 2.81 16 3 N -0.57 -12.98 2.37 -174.61 -0.41 -13.39 16 4 C -0.25 -6.18 7.33 -15.06 -0.11 -6.29 16 5 H 0.06 1.51 7.85 -52.49 -0.41 1.10 16 6 C 0.04 0.92 3.46 -17.43 -0.06 0.86 16 7 N -0.88 -23.29 11.37 55.49 0.63 -22.66 16 8 Si 0.86 20.41 27.69 -169.99 -4.71 15.71 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.17 3.74 5.07 -5.20 -0.03 3.72 16 13 C -0.10 -2.01 5.28 -104.45 -0.55 -2.56 16 14 C -0.05 -0.80 8.95 -39.26 -0.35 -1.15 16 15 C -0.15 -2.26 6.25 -39.38 -0.25 -2.51 16 16 Br -0.05 -0.63 33.74 -68.01 -2.29 -2.93 16 17 C 0.12 1.89 10.94 -17.52 -0.19 1.70 16 18 N -0.48 -9.12 10.34 -10.34 -0.11 -9.22 16 19 C 0.19 3.99 7.27 -17.45 -0.13 3.87 16 20 Cl 0.01 0.24 21.55 -51.86 -1.12 -0.88 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.73 7.29 -51.93 -0.38 0.35 16 24 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.04 0.65 7.83 -51.93 -0.41 0.25 16 26 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.12 2.82 5.12 -51.93 -0.27 2.56 16 28 H 0.04 0.85 7.71 -51.93 -0.40 0.45 16 29 H 0.14 2.05 8.05 -52.49 -0.42 1.63 16 30 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -26.01 284.16 -8.15 -34.16 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.11 Total: -2.89 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.31 Total: -2.18 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.11 Total: -45.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.71 Total: 15.71 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.12 Total: -0.88 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.01 -8.15 -34.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843392123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.301 kcal (2) G-P(sol) polarization free energy of solvation -26.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds