Wall clock time and date at job start Tue Mar 31 2020 12:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47259 * 2 1 4 4 C 1.36937 * 119.99587 * 275.32103 * 3 2 1 5 5 H 1.07997 * 120.00292 * 44.89185 * 4 3 2 6 6 C 1.38815 * 119.99228 * 224.89686 * 4 3 2 7 7 N 1.31613 * 120.00803 * 10.81861 * 6 4 3 8 8 Si 1.86807 * 119.99601 * 190.82177 * 6 4 3 9 9 H 1.48498 * 109.47086 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47122 * 119.99916 * 8 6 4 11 11 H 1.48505 * 109.46872 * 239.99937 * 8 6 4 12 12 C 1.46501 * 120.00118 * 95.31643 * 3 2 1 13 13 C 1.50696 * 109.46748 * 270.00125 * 12 3 2 14 14 C 1.38604 * 120.41836 * 105.00451 * 13 12 3 15 15 C 1.38753 * 118.42539 * 180.02562 * 14 13 12 16 16 Br 1.89099 * 120.41025 * 179.97438 * 15 14 13 17 17 C 1.38272 * 119.17240 * 359.97438 * 15 14 13 18 18 N 1.31869 * 120.77141 * 0.02562 * 17 15 14 19 19 C 1.31974 * 121.71585 * 359.97438 * 18 17 15 20 20 Cl 1.73600 * 119.62628 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47229 * 60.00120 * 1 2 3 22 22 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46980 * 299.99920 * 1 2 3 24 24 H 1.08994 * 109.47540 * 239.99633 * 2 1 3 25 25 H 1.09001 * 109.47410 * 119.99425 * 2 1 3 26 26 H 0.96997 * 120.00660 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47107 * 150.00035 * 12 3 2 28 28 H 1.09004 * 109.47178 * 30.00012 * 12 3 2 29 29 H 1.07995 * 120.78603 * 0.03481 * 14 13 12 30 30 H 1.08006 * 119.61162 * 179.72560 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 1.3521 2.0207 -1.9151 6 6 3.2857 2.8096 -1.4340 7 7 4.3340 2.6957 -0.6465 8 14 3.3356 3.9757 -2.8925 9 1 2.0397 3.9197 -3.6156 10 1 3.5752 5.3600 -2.4115 11 1 4.4318 3.5738 -3.8103 12 6 2.3734 2.0327 1.2633 13 6 1.1613 2.7276 1.8280 14 6 0.4815 2.1862 2.9078 15 6 -0.6295 2.8603 3.3941 16 35 -1.5990 2.1718 4.8644 17 6 -1.0188 4.0417 2.7902 18 7 -0.3481 4.5279 1.7642 19 6 0.7129 3.9140 1.2752 20 17 1.5557 4.6030 -0.0771 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 5.1324 3.2174 -0.8231 27 1 3.1618 2.7641 1.0859 28 1 2.7257 1.2833 1.9721 29 1 0.8089 1.2618 3.3599 30 1 -1.8852 4.5700 3.1602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843392123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:49 Heat of formation + Delta-G solvation = 37.389410 kcal Electronic energy + Delta-G solvation = -17285.460815 eV Core-core repulsion = 14381.085856 eV Total energy + Delta-G solvation = -2904.374959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.983 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29822 -37.88727 -37.24127 -34.22433 -33.80501 -33.45201 -30.80830 -30.12473 -27.69044 -25.58675 -24.49254 -23.10201 -21.93527 -18.78392 -18.17608 -17.96971 -16.92147 -16.00478 -15.89367 -15.54502 -15.25158 -14.81144 -14.35179 -14.16682 -13.93433 -13.22358 -13.13813 -13.03767 -12.71143 -12.69992 -12.44499 -12.18378 -12.01527 -11.76251 -11.62379 -11.56407 -11.43788 -10.70079 -10.55615 -10.28349 -9.62245 -8.44718 -7.79607 -5.46829 -0.26220 0.12061 0.39624 0.96702 1.38256 1.45557 1.56931 2.42755 2.52940 3.31138 3.49302 3.73302 3.78378 3.85380 3.95607 4.44697 4.53249 4.63475 4.78307 4.83523 4.86813 5.09109 5.16470 5.31196 5.33428 5.56685 5.66235 5.79164 6.55384 6.63172 7.22793 7.83895 8.39906 9.15899 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.005228 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.948687 B = 5354.955184 C = 5985.045527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.240 4.240 5 H 0.040 0.960 6 C 0.012 3.988 7 N -0.904 5.904 8 Si 0.891 3.109 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.282 1.282 12 C 0.180 3.820 13 C -0.116 4.116 14 C -0.037 4.037 15 C -0.145 4.145 16 Br -0.011 7.011 17 C 0.127 3.873 18 N -0.498 5.498 19 C 0.174 3.826 20 Cl -0.019 7.019 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.253 0.747 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.165 0.835 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -2.155 12.365 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.371 4.371 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.547 5.547 8 Si 0.719 3.281 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.208 1.208 12 C 0.053 3.947 13 C -0.123 4.123 14 C -0.065 4.065 15 C -0.226 4.226 16 Br 0.073 6.927 17 C -0.033 4.033 18 N -0.210 5.210 19 C 0.011 3.989 20 Cl 0.009 6.991 21 H 0.046 0.954 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.182 0.818 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.011 -1.534 12.340 16.609 hybrid contribution 0.739 0.444 -1.184 1.465 sum -10.273 -1.090 11.155 15.204 Atomic orbital electron populations 1.22154 0.98399 1.00641 0.99938 1.21006 0.92694 0.85324 0.99512 1.43814 1.76117 1.09136 1.01361 1.18801 0.97980 1.25344 0.94985 0.94212 1.25465 0.94698 1.00777 0.97778 1.69855 1.03264 1.42213 1.39391 0.86301 0.78315 0.80651 0.82818 1.19437 1.21120 1.20839 1.19934 0.91446 0.96760 0.86546 1.21902 1.01813 0.93778 0.94808 1.21639 0.91957 0.99452 0.93433 1.23003 1.00054 0.99878 0.99710 1.96704 1.72250 1.85737 1.38008 1.23037 0.98381 0.92141 0.89780 1.67205 1.06947 1.34352 1.12470 1.22014 0.92430 0.92211 0.92224 1.98458 1.73733 1.85723 1.41156 0.95381 0.91372 0.94227 0.94366 0.92610 0.93725 0.89535 0.92582 0.81773 0.79019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.21 71.98 0.73 -4.40 16 2 C 0.14 5.34 6.44 86.38 0.56 5.90 16 3 N -0.58 -26.55 2.37 -706.35 -1.68 -28.23 16 4 C -0.24 -12.27 7.33 84.03 0.62 -11.65 16 5 H 0.04 2.15 7.85 -2.91 -0.02 2.13 16 6 C 0.01 0.61 3.46 84.86 0.29 0.90 16 7 N -0.90 -48.84 11.37 21.65 0.25 -48.59 16 8 Si 0.89 42.67 27.69 68.60 1.90 44.57 16 9 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 C 0.18 7.65 5.07 85.63 0.43 8.08 16 13 C -0.12 -4.38 5.28 -19.75 -0.10 -4.48 16 14 C -0.04 -1.09 8.95 22.48 0.20 -0.89 16 15 C -0.14 -3.87 6.25 22.40 0.14 -3.73 16 16 Br -0.01 -0.23 33.74 -20.37 -0.69 -0.92 16 17 C 0.13 3.63 10.94 84.70 0.93 4.55 16 18 N -0.50 -18.23 10.34 -186.63 -1.93 -20.15 16 19 C 0.17 7.09 7.27 84.70 0.62 7.71 16 20 Cl -0.02 -0.88 21.55 -2.72 -0.06 -0.94 16 21 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.04 1.32 7.29 -2.39 -0.02 1.31 16 24 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 25 H 0.06 1.90 7.83 -2.39 -0.02 1.88 16 26 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 27 H 0.09 4.28 5.12 -2.39 -0.01 4.27 16 28 H 0.06 2.16 7.71 -2.38 -0.02 2.14 16 29 H 0.16 4.11 8.05 -2.91 -0.02 4.09 16 30 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -56.40 284.16 3.36 -53.04 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.16 Total: -0.78 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 4.41 Total: 2.00 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.36 Total: -96.98 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.90 Total: 44.57 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.06 Total: -0.94 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Total: -56.40 3.36 -53.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843392123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.428 kcal (2) G-P(sol) polarization free energy of solvation -56.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds