Wall clock time and date at job start Tue Mar 31 2020 11:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03687 * 2 1 4 4 C 1.35308 * 107.74945 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03995 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47318 * 254.35563 * 5 4 3 7 7 C 1.46906 * 111.00158 * 199.58096 * 6 5 4 8 8 C 1.50696 * 109.47237 * 170.00196 * 7 6 5 9 9 H 1.08000 * 119.99872 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00056 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00180 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00105 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46762 * 90.00142 * 12 10 8 14 14 H 1.48498 * 109.47428 * 210.00411 * 12 10 8 15 15 H 1.48501 * 109.46902 * 330.00276 * 12 10 8 16 16 C 1.46894 * 110.99908 * 75.62362 * 6 5 4 17 17 C 1.53003 * 109.47249 * 68.19890 * 16 6 5 18 18 C 1.52989 * 117.52109 * 116.74928 * 17 16 6 19 19 C 1.52992 * 60.00305 * 107.47950 * 18 17 16 20 20 C 1.39867 * 107.92235 * 0.26222 * 4 3 2 21 21 C 1.50697 * 125.90451 * 179.73711 * 20 4 3 22 22 C 1.54264 * 110.03441 * 237.90788 * 21 20 4 23 23 C 1.54963 * 104.15987 * 217.13409 * 22 21 20 24 24 C 1.54886 * 102.77860 * 37.89206 * 23 22 21 25 25 C 1.53874 * 110.03238 * 120.68893 * 21 20 4 26 26 N 1.30851 * 108.19942 * 359.55733 * 20 4 3 27 27 H 1.08998 * 109.47276 * 89.99969 * 1 2 3 28 28 H 1.09004 * 109.47113 * 209.99695 * 1 2 3 29 29 H 1.08995 * 109.47178 * 329.99725 * 1 2 3 30 30 H 1.08002 * 126.12349 * 0.04430 * 3 2 1 31 31 H 1.09005 * 109.46488 * 134.35667 * 5 4 3 32 32 H 1.08994 * 109.47183 * 14.35880 * 5 4 3 33 33 H 1.09000 * 109.46836 * 290.00015 * 7 6 5 34 34 H 1.08997 * 109.47095 * 49.99895 * 7 6 5 35 35 H 0.97003 * 119.99954 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47496 * 308.19421 * 16 6 5 37 37 H 1.09005 * 109.47274 * 188.19666 * 16 6 5 38 38 H 1.09000 * 115.54212 * 331.04268 * 17 16 6 39 39 H 1.09001 * 117.49667 * 214.97249 * 18 17 16 40 40 H 1.09004 * 117.50146 * 359.97438 * 18 17 16 41 41 H 1.09000 * 117.50042 * 252.50690 * 19 18 17 42 42 H 1.09008 * 117.49924 * 107.48446 * 19 18 17 43 43 H 1.08998 * 110.01446 * 359.29882 * 21 20 4 44 44 H 1.08996 * 110.48706 * 335.78479 * 22 21 20 45 45 H 1.09009 * 110.48397 * 98.42624 * 22 21 20 46 46 H 1.08995 * 110.71970 * 279.57086 * 23 22 21 47 47 H 1.09003 * 110.76041 * 156.22761 * 23 22 21 48 48 H 1.09001 * 110.48196 * 203.41023 * 24 23 22 49 49 H 1.08997 * 110.60049 * 80.81203 * 24 23 22 50 50 H 1.09001 * 110.03268 * 238.57020 * 25 21 20 51 51 H 1.08994 * 110.03532 * 359.95796 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 7 5.3828 1.5275 -1.3352 7 6 6.7835 1.9663 -1.2753 8 6 7.4493 1.7043 -2.6015 9 1 6.8881 1.2561 -3.4082 10 6 8.7747 2.0366 -2.7852 11 7 9.3556 1.8084 -3.9428 12 14 9.7450 2.8124 -1.3902 13 1 10.3826 1.7455 -0.5775 14 1 10.7942 3.7011 -1.9512 15 1 8.8296 3.6074 -0.5328 16 6 4.6140 2.3481 -2.2804 17 6 4.7383 3.8232 -1.8936 18 6 5.4179 4.7612 -2.8929 19 6 3.9041 4.8334 -2.6837 20 6 3.5347 -0.7319 -0.0070 21 6 4.7497 -1.6234 -0.0154 22 6 4.7160 -2.5511 -1.2475 23 6 5.2923 -3.8925 -0.7279 24 6 4.7041 -3.9872 0.7018 25 6 4.7426 -2.5358 1.2236 26 7 2.2891 -1.1327 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.9280 2.1194 0.0007 31 1 5.4823 1.1738 0.7332 32 1 4.4826 2.5661 0.2535 33 1 6.8208 3.0331 -1.0545 34 1 7.3038 1.4148 -0.4922 35 1 10.2880 2.0425 -4.0721 36 1 3.5656 2.0515 -2.2499 37 1 5.0034 2.2027 -3.2881 38 1 4.8943 4.0193 -0.8328 39 1 6.0211 5.5747 -2.4896 40 1 5.7771 4.3276 -3.8263 41 1 3.2670 4.4473 -3.4794 42 1 3.5112 5.6943 -2.1426 43 1 5.6563 -1.0184 -0.0283 44 1 3.6920 -2.6855 -1.5959 45 1 5.3416 -2.1495 -2.0447 46 1 6.3812 -3.8578 -0.6961 47 1 4.9490 -4.7245 -1.3427 48 1 5.3211 -4.6334 1.3261 49 1 3.6783 -4.3543 0.6709 50 1 5.6461 -2.3743 1.8115 51 1 3.8607 -2.3334 1.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891934092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:56 Heat of formation + Delta-G solvation = 98.207507 kcal Electronic energy + Delta-G solvation = -27969.412844 eV Core-core repulsion = 24484.877567 eV Total energy + Delta-G solvation = -3484.535277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09246 -38.02016 -37.63513 -35.19309 -33.21345 -32.36353 -30.51018 -29.11335 -28.37013 -27.81248 -26.93152 -25.27860 -23.24628 -21.85507 -21.40180 -21.30650 -20.41516 -20.13593 -19.01059 -18.38299 -16.74293 -16.38944 -15.54882 -15.49711 -15.24406 -14.89914 -14.56839 -14.21021 -14.13795 -13.50755 -13.38527 -13.11927 -13.07650 -12.88114 -12.60685 -12.37462 -12.27491 -11.91300 -11.29624 -11.26711 -11.15786 -11.07528 -10.98018 -10.93071 -10.87808 -10.72793 -10.49097 -10.41805 -10.36788 -10.25410 -10.07389 -9.84990 -9.76510 -9.25236 -9.17297 -8.87264 -8.48662 -8.03935 -7.19674 -5.97347 -3.92492 2.12258 2.70358 3.07285 3.32424 3.40191 3.41961 4.32560 4.48527 4.55841 4.89537 4.91229 4.96027 5.02914 5.09140 5.12090 5.24976 5.30168 5.35712 5.38915 5.48101 5.50638 5.61981 5.63616 5.74349 5.85900 5.90689 5.93133 5.97083 5.99551 6.07344 6.14245 6.14640 6.17370 6.28154 6.31432 6.33709 6.42266 6.46895 6.50164 6.56110 6.63237 6.70552 6.79585 6.87622 6.99844 7.02034 7.14175 7.24912 7.69905 8.02511 8.04616 8.17631 8.75994 9.12318 9.65777 11.16012 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.005153 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.296802 B = 5432.385825 C = 7397.038547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.386 5.386 3 C 0.047 3.953 4 C -0.205 4.205 5 C 0.123 3.877 6 N -0.514 5.514 7 C 0.160 3.840 8 C -0.494 4.494 9 H 0.078 0.922 10 C 0.070 3.930 11 N -0.903 5.903 12 Si 0.868 3.132 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.268 1.268 16 C 0.102 3.898 17 C -0.172 4.172 18 C -0.160 4.160 19 C -0.192 4.192 20 C 0.113 3.887 21 C -0.009 4.009 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.114 4.114 26 N -0.301 5.301 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.070 0.930 32 H 0.033 0.967 33 H -0.005 1.005 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 -2.695 9.369 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.169 5.169 3 C -0.099 4.099 4 C -0.217 4.217 5 C -0.006 4.006 6 N -0.235 5.235 7 C 0.034 3.966 8 C -0.533 4.533 9 H 0.097 0.903 10 C -0.131 4.131 11 N -0.543 5.543 12 Si 0.696 3.304 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.193 1.193 16 C -0.027 4.027 17 C -0.192 4.192 18 C -0.197 4.197 19 C -0.230 4.230 20 C -0.054 4.054 21 C -0.029 4.029 22 C -0.147 4.147 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.153 4.153 26 N -0.123 5.123 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.182 0.818 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.013 0.987 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.289 -4.154 9.121 19.125 hybrid contribution 1.035 2.278 0.969 2.683 sum -15.254 -1.876 10.090 18.385 Atomic orbital electron populations 1.21699 0.75004 1.03775 1.02861 1.48242 1.06009 1.03982 1.58637 1.22215 0.90953 0.92956 1.03739 1.20003 0.94017 0.93769 1.13925 1.20337 0.92342 0.95239 0.92719 1.62138 1.03206 1.52644 1.05548 1.20212 0.84411 0.93594 0.98354 1.20954 0.95412 1.39699 0.97212 0.90349 1.24835 0.97502 0.95613 0.95163 1.69895 1.12270 1.48907 1.23235 0.86967 0.80269 0.79866 0.83291 1.20319 1.21497 1.19289 1.21612 0.96668 0.86301 0.98099 1.22970 1.04278 0.94949 0.97007 1.22875 0.93234 1.01771 1.01857 1.22885 0.94811 1.01562 1.03728 1.22041 0.92719 0.93179 0.97457 1.20247 0.93324 0.94258 0.95072 1.22365 1.01323 0.93877 0.97150 1.22512 1.00430 0.97479 0.95789 1.22319 1.00555 0.96388 0.96539 1.22202 1.01527 0.94451 0.97083 1.77223 1.01318 1.07469 1.26310 0.91275 0.89813 0.90060 0.81783 0.91119 0.94926 0.98693 0.96314 0.92896 0.92645 0.89948 0.88931 0.89963 0.88067 0.89420 0.90054 0.88185 0.91737 0.90501 0.91320 0.92001 0.92246 0.91968 0.91817 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.92 11.47 59.84 0.69 1.60 16 2 N -0.39 -5.17 4.01 -68.17 -0.27 -5.44 16 3 C 0.05 0.64 11.02 -17.22 -0.19 0.45 16 4 C -0.21 -3.26 4.96 -105.06 -0.52 -3.78 16 5 C 0.12 2.07 4.74 -4.98 -0.02 2.05 16 6 N -0.51 -10.18 4.62 -237.52 -1.10 -11.28 16 7 C 0.16 3.70 3.54 -4.97 -0.02 3.69 16 8 C -0.49 -13.45 9.12 -34.44 -0.31 -13.77 16 9 H 0.08 2.36 7.34 -52.49 -0.39 1.97 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 12 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 16 C 0.10 1.90 5.29 -3.83 -0.02 1.88 16 17 C -0.17 -2.93 3.89 -90.62 -0.35 -3.28 16 18 C -0.16 -2.79 10.18 -26.74 -0.27 -3.07 16 19 C -0.19 -2.79 10.25 -26.74 -0.27 -3.06 16 20 C 0.11 1.83 5.45 -82.40 -0.45 1.39 16 21 C -0.01 -0.13 3.33 -90.66 -0.30 -0.44 16 22 C -0.11 -1.67 6.36 -25.03 -0.16 -1.83 16 23 C -0.12 -1.61 6.91 -24.70 -0.17 -1.78 16 24 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 25 C -0.11 -1.53 6.45 -25.61 -0.17 -1.70 16 26 N -0.30 -4.80 12.33 33.67 0.42 -4.39 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 32 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 33 H 0.00 -0.11 5.64 -51.93 -0.29 -0.40 16 34 H 0.02 0.44 7.26 -51.93 -0.38 0.06 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.06 0.97 7.15 -51.93 -0.37 0.59 16 37 H 0.08 1.76 6.72 -51.93 -0.35 1.41 16 38 H 0.09 1.59 6.33 -51.93 -0.33 1.26 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.10 1.95 8.03 -51.93 -0.42 1.53 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.10 1.72 7.41 -51.93 -0.38 1.34 16 44 H 0.06 1.03 7.67 -51.93 -0.40 0.63 16 45 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.06 0.85 7.65 -51.93 -0.40 0.46 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -30.98 397.40 -10.75 -41.73 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -9.08 Total: 4.69 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.81 Total: -21.42 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.18 Total: -47.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.98 -10.75 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.939 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds