Wall clock time and date at job start Tue Mar 31 2020 11:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03687 * 2 1 4 4 C 1.35308 * 107.74945 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03995 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47318 * 254.35563 * 5 4 3 7 7 C 1.46906 * 111.00158 * 199.58096 * 6 5 4 8 8 C 1.50696 * 109.47237 * 170.00196 * 7 6 5 9 9 H 1.08000 * 119.99872 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00056 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00180 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00105 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46762 * 90.00142 * 12 10 8 14 14 H 1.48498 * 109.47428 * 210.00411 * 12 10 8 15 15 H 1.48501 * 109.46902 * 330.00276 * 12 10 8 16 16 C 1.46894 * 110.99908 * 75.62362 * 6 5 4 17 17 C 1.53003 * 109.47249 * 68.19890 * 16 6 5 18 18 C 1.52989 * 117.52109 * 116.74928 * 17 16 6 19 19 C 1.52992 * 60.00305 * 107.47950 * 18 17 16 20 20 C 1.39867 * 107.92235 * 0.26222 * 4 3 2 21 21 C 1.50697 * 125.90451 * 179.73711 * 20 4 3 22 22 C 1.54264 * 110.03441 * 237.90788 * 21 20 4 23 23 C 1.54963 * 104.15987 * 217.13409 * 22 21 20 24 24 C 1.54886 * 102.77860 * 37.89206 * 23 22 21 25 25 C 1.53874 * 110.03238 * 120.68893 * 21 20 4 26 26 N 1.30851 * 108.19942 * 359.55733 * 20 4 3 27 27 H 1.08998 * 109.47276 * 89.99969 * 1 2 3 28 28 H 1.09004 * 109.47113 * 209.99695 * 1 2 3 29 29 H 1.08995 * 109.47178 * 329.99725 * 1 2 3 30 30 H 1.08002 * 126.12349 * 0.04430 * 3 2 1 31 31 H 1.09005 * 109.46488 * 134.35667 * 5 4 3 32 32 H 1.08994 * 109.47183 * 14.35880 * 5 4 3 33 33 H 1.09000 * 109.46836 * 290.00015 * 7 6 5 34 34 H 1.08997 * 109.47095 * 49.99895 * 7 6 5 35 35 H 0.97003 * 119.99954 * 179.97438 * 11 10 8 36 36 H 1.08996 * 109.47496 * 308.19421 * 16 6 5 37 37 H 1.09005 * 109.47274 * 188.19666 * 16 6 5 38 38 H 1.09000 * 115.54212 * 331.04268 * 17 16 6 39 39 H 1.09001 * 117.49667 * 214.97249 * 18 17 16 40 40 H 1.09004 * 117.50146 * 359.97438 * 18 17 16 41 41 H 1.09000 * 117.50042 * 252.50690 * 19 18 17 42 42 H 1.09008 * 117.49924 * 107.48446 * 19 18 17 43 43 H 1.08998 * 110.01446 * 359.29882 * 21 20 4 44 44 H 1.08996 * 110.48706 * 335.78479 * 22 21 20 45 45 H 1.09009 * 110.48397 * 98.42624 * 22 21 20 46 46 H 1.08995 * 110.71970 * 279.57086 * 23 22 21 47 47 H 1.09003 * 110.76041 * 156.22761 * 23 22 21 48 48 H 1.09001 * 110.48196 * 203.41023 * 24 23 22 49 49 H 1.08997 * 110.60049 * 80.81203 * 24 23 22 50 50 H 1.09001 * 110.03268 * 238.57020 * 25 21 20 51 51 H 1.08994 * 110.03532 * 359.95796 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 7 5.3828 1.5275 -1.3352 7 6 6.7835 1.9663 -1.2753 8 6 7.4493 1.7043 -2.6015 9 1 6.8881 1.2561 -3.4082 10 6 8.7747 2.0366 -2.7852 11 7 9.3556 1.8084 -3.9428 12 14 9.7450 2.8124 -1.3902 13 1 10.3826 1.7455 -0.5775 14 1 10.7942 3.7011 -1.9512 15 1 8.8296 3.6074 -0.5328 16 6 4.6140 2.3481 -2.2804 17 6 4.7383 3.8232 -1.8936 18 6 5.4179 4.7612 -2.8929 19 6 3.9041 4.8334 -2.6837 20 6 3.5347 -0.7319 -0.0070 21 6 4.7497 -1.6234 -0.0154 22 6 4.7160 -2.5511 -1.2475 23 6 5.2923 -3.8925 -0.7279 24 6 4.7041 -3.9872 0.7018 25 6 4.7426 -2.5358 1.2236 26 7 2.2891 -1.1327 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.9280 2.1194 0.0007 31 1 5.4823 1.1738 0.7332 32 1 4.4826 2.5661 0.2535 33 1 6.8208 3.0331 -1.0545 34 1 7.3038 1.4148 -0.4922 35 1 10.2880 2.0425 -4.0721 36 1 3.5656 2.0515 -2.2499 37 1 5.0034 2.2027 -3.2881 38 1 4.8943 4.0193 -0.8328 39 1 6.0211 5.5747 -2.4896 40 1 5.7771 4.3276 -3.8263 41 1 3.2670 4.4473 -3.4794 42 1 3.5112 5.6943 -2.1426 43 1 5.6563 -1.0184 -0.0283 44 1 3.6920 -2.6855 -1.5959 45 1 5.3416 -2.1495 -2.0447 46 1 6.3812 -3.8578 -0.6961 47 1 4.9490 -4.7245 -1.3427 48 1 5.3211 -4.6334 1.3261 49 1 3.6783 -4.3543 0.6709 50 1 5.6461 -2.3743 1.8115 51 1 3.8607 -2.3334 1.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891934092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:55 Heat of formation + Delta-G solvation = 80.662258 kcal Electronic energy + Delta-G solvation = -27970.173663 eV Core-core repulsion = 24484.877567 eV Total energy + Delta-G solvation = -3485.296096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20507 -39.48711 -38.75393 -36.61986 -34.70702 -34.00309 -31.84920 -30.16238 -29.61349 -29.50635 -28.19563 -26.52650 -24.77925 -23.12917 -23.01722 -22.44289 -21.55069 -21.34977 -20.42589 -19.57428 -18.77154 -17.57104 -16.94241 -16.63800 -16.37179 -16.19238 -16.00233 -15.79885 -15.63165 -14.87882 -14.49335 -14.40231 -14.28961 -14.18911 -14.05115 -13.57200 -13.46049 -13.25743 -13.08689 -12.68579 -12.60766 -12.32174 -12.24963 -12.22291 -12.17013 -12.07128 -11.93335 -11.87034 -11.78066 -11.53937 -11.45373 -11.36556 -11.14975 -11.07455 -10.70986 -10.60523 -9.97365 -9.17527 -8.75706 -8.18327 -6.17948 1.04823 1.37791 1.38252 1.48404 1.78715 1.86875 2.40599 2.99911 3.16929 3.47635 3.65241 3.79243 3.87955 3.91537 3.97836 4.09167 4.12380 4.20731 4.37312 4.40588 4.49299 4.52207 4.60869 4.62615 4.69535 4.72718 4.73074 4.76862 4.81822 4.83308 4.84992 4.88755 5.01035 5.02681 5.03681 5.11805 5.12390 5.15450 5.23858 5.28185 5.33716 5.34299 5.38527 5.47618 5.51586 5.57411 5.67078 5.83951 6.13145 6.28766 6.53746 6.81999 6.87228 6.92686 7.44444 8.98667 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.005153 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.296802 B = 5432.385825 C = 7397.038547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.382 5.382 3 C 0.064 3.936 4 C -0.237 4.237 5 C 0.132 3.868 6 N -0.529 5.529 7 C 0.175 3.825 8 C -0.489 4.489 9 H 0.032 0.968 10 C 0.011 3.989 11 N -0.952 5.952 12 Si 0.935 3.065 13 H -0.269 1.269 14 H -0.288 1.288 15 H -0.249 1.249 16 C 0.111 3.889 17 C -0.180 4.180 18 C -0.186 4.186 19 C -0.152 4.152 20 C 0.097 3.903 21 C -0.010 4.010 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.108 4.108 26 N -0.325 5.325 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.200 0.800 31 H 0.064 0.936 32 H 0.050 0.950 33 H -0.002 1.002 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.779 -1.555 12.104 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.249 4.249 5 C 0.003 3.997 6 N -0.251 5.251 7 C 0.048 3.952 8 C -0.528 4.528 9 H 0.050 0.950 10 C -0.185 4.185 11 N -0.594 5.594 12 Si 0.760 3.240 13 H -0.194 1.194 14 H -0.214 1.214 15 H -0.172 1.172 16 C -0.017 4.017 17 C -0.200 4.200 18 C -0.223 4.223 19 C -0.189 4.189 20 C -0.068 4.068 21 C -0.031 4.031 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.146 4.146 26 N -0.148 5.148 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.015 0.985 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.618 -3.030 11.870 22.287 hybrid contribution 1.586 1.884 0.007 2.463 sum -17.033 -1.145 11.878 20.797 Atomic orbital electron populations 1.22113 0.72117 1.05785 1.04166 1.48658 1.07611 1.03246 1.56899 1.22651 0.90085 0.94357 1.01216 1.19985 0.94667 0.93505 1.16724 1.20245 0.92602 0.96434 0.90378 1.61994 1.01957 1.53247 1.07877 1.19903 0.86326 0.93483 0.95480 1.21117 0.95366 1.38383 0.97929 0.94982 1.25681 0.98710 0.96372 0.97747 1.70060 1.12724 1.50886 1.25766 0.85888 0.78802 0.79218 0.80113 1.19431 1.21381 1.17233 1.21406 0.96763 0.87789 0.95740 1.22865 1.05958 0.93857 0.97278 1.22809 0.96183 1.02432 1.00874 1.22962 0.92475 1.00881 1.02578 1.22104 0.92998 0.93668 0.98060 1.20177 0.92499 0.94359 0.96028 1.22281 1.00245 0.95476 0.96534 1.22502 1.00304 0.96305 0.96709 1.22284 1.01047 0.95825 0.95842 1.22151 1.01689 0.94768 0.96026 1.77154 1.01405 1.09009 1.27189 0.90258 0.89267 0.86698 0.78324 0.91769 0.93170 0.98459 0.96373 0.92897 0.91100 0.94108 0.88123 0.89423 0.91332 0.88577 0.86934 0.90691 0.92565 0.93518 0.91440 0.90702 0.90155 0.91703 0.91074 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 11.47 127.77 1.47 2.78 16 2 N -0.38 -9.23 4.01 -369.58 -1.48 -10.72 16 3 C 0.06 1.55 11.02 83.54 0.92 2.47 16 4 C -0.24 -7.24 4.96 -20.15 -0.10 -7.34 16 5 C 0.13 4.32 4.74 85.56 0.41 4.73 16 6 N -0.53 -21.35 4.62 -905.39 -4.18 -25.54 16 7 C 0.18 8.21 3.54 85.55 0.30 8.52 16 8 C -0.49 -27.98 9.12 25.60 0.23 -27.75 16 9 H 0.03 2.08 7.34 -2.91 -0.02 2.06 16 10 C 0.01 0.65 5.47 84.65 0.46 1.11 16 11 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 12 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 15 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 16 C 0.11 4.20 5.29 86.31 0.46 4.66 16 17 C -0.18 -5.87 3.89 -10.80 -0.04 -5.91 16 18 C -0.19 -6.43 10.18 30.59 0.31 -6.12 16 19 C -0.15 -3.96 10.25 30.59 0.31 -3.65 16 20 C 0.10 3.16 5.45 43.10 0.23 3.39 16 21 C -0.01 -0.32 3.33 -10.82 -0.04 -0.36 16 22 C -0.11 -3.45 6.36 31.69 0.20 -3.25 16 23 C -0.12 -3.12 6.91 31.91 0.22 -2.90 16 24 C -0.11 -2.59 6.83 31.67 0.22 -2.37 16 25 C -0.11 -2.84 6.45 31.32 0.20 -2.64 16 26 N -0.32 -10.03 12.33 -47.38 -0.58 -10.62 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.06 2.15 7.57 -2.38 -0.02 2.14 16 32 H 0.05 1.46 6.17 -2.39 -0.01 1.45 16 33 H 0.00 -0.10 5.64 -2.39 -0.01 -0.12 16 34 H 0.02 0.86 7.26 -2.39 -0.02 0.84 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.07 2.42 7.15 -2.39 -0.02 2.40 16 37 H 0.04 1.86 6.72 -2.38 -0.02 1.84 16 38 H 0.10 3.17 6.33 -2.39 -0.02 3.15 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.07 2.80 8.03 -2.38 -0.02 2.78 16 41 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.07 2.73 7.41 -2.39 -0.02 2.71 16 44 H 0.06 1.87 7.67 -2.39 -0.02 1.85 16 45 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.06 1.57 7.65 -2.39 -0.02 1.55 16 Total: -1.00 -71.39 397.40 2.53 -68.86 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.83 Total: 26.15 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 5.77 Total: -34.63 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -5.95 Total: -106.61 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -71.39 2.53 -68.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.522 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds