Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.50710 * 109.46958 * 180.02562 * 7 6 4 9 9 C 1.31326 * 119.99957 * 134.99695 * 8 7 6 10 10 Cl 1.73598 * 120.00089 * 0.02562 * 9 8 7 11 11 Cl 1.73601 * 119.99939 * 180.02562 * 9 8 7 12 12 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 13 13 N 1.30427 * 108.01038 * 359.72043 * 12 3 2 14 14 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.74900 * 359.97341 * 14 2 1 16 16 C 1.50702 * 109.46957 * 90.00099 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 25 25 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 26 26 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 27 27 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 28 28 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 29 29 H 1.08003 * 119.99346 * 315.00280 * 8 7 6 30 30 H 1.08000 * 125.99491 * 179.97438 * 12 3 2 31 31 H 1.09004 * 109.47166 * 330.00365 * 15 14 2 32 32 H 1.08994 * 109.47507 * 210.00071 * 15 14 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4569 5.8353 0.0029 9 6 3.4466 6.8742 -0.8005 10 17 2.0980 7.1377 -1.8614 11 17 4.7816 7.9839 -0.8015 12 6 3.6599 0.6496 -0.0006 13 7 3.6340 -0.6544 0.0051 14 7 2.3015 -1.0818 -0.0005 15 6 1.8499 -2.4754 -0.0006 16 6 1.6945 -2.9530 -1.4214 17 1 1.9110 -2.2853 -2.2423 18 6 1.2819 -4.2443 -1.6735 19 7 1.0187 -5.0574 -0.6739 20 14 1.0967 -4.8386 -3.4346 21 1 1.4518 -3.7395 -4.3679 22 1 2.0006 -5.9942 -3.6647 23 1 -0.3090 -5.2549 -3.6715 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6897 5.0353 -0.8860 28 1 1.6910 5.0334 0.8939 29 1 4.2957 5.6714 0.6632 30 1 4.5461 1.2669 -0.0012 31 1 0.8913 -2.5467 0.5136 32 1 2.5846 -3.0955 0.5129 33 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893160552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = -17.135097 kcal Electronic energy + Delta-G solvation = -20917.152904 eV Core-core repulsion = 17224.841271 eV Total energy + Delta-G solvation = -3692.311633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94783 -39.74478 -37.91512 -36.99768 -36.34809 -34.01066 -33.72084 -32.17788 -31.29794 -28.09490 -26.92237 -26.40443 -23.60679 -22.40702 -20.88247 -20.39632 -18.97154 -17.67557 -17.29673 -16.84013 -16.48828 -15.85059 -15.34432 -14.90356 -14.58646 -14.40709 -14.05552 -13.56235 -13.16568 -13.03598 -12.72221 -12.55452 -12.25768 -12.14823 -11.89607 -11.87236 -11.65299 -11.59340 -11.49799 -11.15157 -10.95526 -10.68854 -10.48056 -10.34915 -9.97227 -9.90595 -9.49138 -8.76237 -8.68800 -8.12998 -6.38609 -4.46840 0.82292 0.96270 1.84494 1.90321 2.66091 2.82718 3.14396 3.22761 3.26791 3.38713 3.60192 4.20669 4.49924 4.76248 4.89439 4.96202 5.10103 5.16278 5.26748 5.36945 5.52706 5.65416 5.90754 5.96856 6.28675 6.40975 6.62001 6.71344 6.83435 7.08736 7.48807 7.67362 7.71210 8.07374 8.29512 8.59109 9.20684 10.69619 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002409 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.546100 B =11619.994312 C =11738.506837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.174 3.826 3 C -0.319 4.319 4 C 0.553 3.447 5 O -0.526 6.526 6 O -0.350 6.350 7 C 0.092 3.908 8 C -0.107 4.107 9 C -0.036 4.036 10 Cl -0.032 7.032 11 Cl -0.031 7.031 12 C 0.081 3.919 13 N -0.296 5.296 14 N -0.310 5.310 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.185 0.815 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 22.173 2.139 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 C -0.333 4.333 4 C 0.401 3.599 5 O -0.417 6.417 6 O -0.268 6.268 7 C 0.018 3.982 8 C -0.127 4.127 9 C -0.089 4.089 10 Cl -0.004 7.004 11 Cl -0.003 7.003 12 C -0.107 4.107 13 N -0.115 5.115 14 N -0.086 5.086 15 C 0.133 3.867 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.176 0.824 30 H 0.202 0.798 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.308 20.939 2.099 21.302 hybrid contribution -0.491 0.554 -0.967 1.217 sum 2.817 21.492 1.132 21.705 Atomic orbital electron populations 1.20677 0.86542 1.05155 1.03578 1.21456 0.95000 0.86386 0.93538 1.18785 0.93857 0.89029 1.31590 1.20046 0.83294 0.84767 0.71802 1.90773 1.17849 1.84366 1.48677 1.86539 1.40020 1.14753 1.85443 1.21932 0.93342 0.78338 1.04576 1.22910 1.00666 0.92145 0.96987 1.23983 0.89229 0.97029 0.98681 1.98438 1.41341 1.95753 1.64875 1.98437 1.42048 1.62352 1.97448 1.23930 0.96610 0.92142 0.97970 1.77224 0.98275 1.12337 1.23712 1.49447 1.02613 1.08325 1.48200 1.19922 0.96562 0.70613 0.99627 1.21289 1.47695 0.98147 0.90927 0.91504 1.24930 0.94370 0.95952 0.98383 1.69922 1.44415 1.07117 1.31113 0.86259 0.77985 0.78902 0.83334 1.19471 1.20522 1.20518 0.90123 0.88640 0.89435 0.89344 0.88815 0.82431 0.79771 0.92402 0.92246 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.34 36.01 0.34 -1.38 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.78 6.13 -105.08 -0.64 -6.43 16 4 C 0.55 9.06 7.95 34.41 0.27 9.33 16 5 O -0.53 -9.23 14.63 -19.28 -0.28 -9.51 16 6 O -0.35 -4.73 10.05 -40.64 -0.41 -5.14 16 7 C 0.09 0.97 5.67 36.01 0.20 1.18 16 8 C -0.11 -0.89 9.64 -36.10 -0.35 -1.24 16 9 C -0.04 -0.30 6.97 28.93 0.20 -0.10 16 10 Cl -0.03 -0.29 26.98 -51.86 -1.40 -1.69 16 11 Cl -0.03 -0.24 29.06 -51.86 -1.51 -1.75 16 12 C 0.08 1.43 11.87 -16.97 -0.20 1.23 16 13 N -0.30 -6.29 12.50 30.87 0.39 -5.90 16 14 N -0.31 -6.82 3.56 -57.77 -0.21 -7.02 16 15 C 0.25 6.03 5.78 -5.20 -0.03 6.00 16 16 C -0.54 -14.26 9.39 -34.44 -0.32 -14.58 16 17 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 20 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.10 1.56 6.51 -51.93 -0.34 1.23 16 26 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 27 H 0.09 0.98 6.19 -51.93 -0.32 0.66 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 31 H 0.06 1.37 7.62 -51.93 -0.40 0.98 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -28.65 330.79 -7.03 -35.68 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.11 Total: -0.27 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.20 Total: -1.46 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.92 Total: -36.26 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.69 Total: -14.65 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -2.91 Total: -3.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.65 -7.03 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893160552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.545 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds