Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.50710 * 109.46958 * 180.02562 * 7 6 4 9 9 C 1.31326 * 119.99957 * 134.99695 * 8 7 6 10 10 Cl 1.73598 * 120.00089 * 0.02562 * 9 8 7 11 11 Cl 1.73601 * 119.99939 * 180.02562 * 9 8 7 12 12 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 13 13 N 1.30427 * 108.01038 * 359.72043 * 12 3 2 14 14 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.74900 * 359.97341 * 14 2 1 16 16 C 1.50702 * 109.46957 * 90.00099 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 25 25 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 26 26 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 27 27 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 28 28 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 29 29 H 1.08003 * 119.99346 * 315.00280 * 8 7 6 30 30 H 1.08000 * 125.99491 * 179.97438 * 12 3 2 31 31 H 1.09004 * 109.47166 * 330.00365 * 15 14 2 32 32 H 1.08994 * 109.47507 * 210.00071 * 15 14 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4569 5.8353 0.0029 9 6 3.4466 6.8742 -0.8005 10 17 2.0980 7.1377 -1.8614 11 17 4.7816 7.9839 -0.8015 12 6 3.6599 0.6496 -0.0006 13 7 3.6340 -0.6544 0.0051 14 7 2.3015 -1.0818 -0.0005 15 6 1.8499 -2.4754 -0.0006 16 6 1.6945 -2.9530 -1.4214 17 1 1.9110 -2.2853 -2.2423 18 6 1.2819 -4.2443 -1.6735 19 7 1.0187 -5.0574 -0.6739 20 14 1.0967 -4.8386 -3.4346 21 1 1.4518 -3.7395 -4.3679 22 1 2.0006 -5.9942 -3.6647 23 1 -0.3090 -5.2549 -3.6715 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6897 5.0353 -0.8860 28 1 1.6910 5.0334 0.8939 29 1 4.2957 5.6714 0.6632 30 1 4.5461 1.2669 -0.0012 31 1 0.8913 -2.5467 0.5136 32 1 2.5846 -3.0955 0.5129 33 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893160552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = -31.875574 kcal Electronic energy + Delta-G solvation = -20917.792099 eV Core-core repulsion = 17224.841271 eV Total energy + Delta-G solvation = -3692.950828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42074 -40.98111 -38.62935 -37.67347 -37.47513 -35.83504 -34.56187 -33.85914 -32.84520 -29.61224 -28.48352 -27.47441 -25.41194 -23.78110 -21.82331 -21.58734 -20.46199 -18.95420 -18.73009 -18.31709 -17.57336 -17.08396 -16.73611 -16.22588 -16.11066 -15.74851 -15.07544 -14.86216 -14.40893 -14.35287 -14.12250 -13.85768 -13.65528 -13.60912 -13.14550 -13.04943 -12.98201 -12.72367 -12.55780 -12.35843 -12.32850 -12.28177 -11.84651 -11.82714 -11.64890 -11.31433 -10.76316 -10.31556 -10.19329 -9.65870 -8.38495 -6.54466 0.13847 0.28754 0.42926 1.18639 1.21062 1.36994 1.39553 1.48480 1.56092 1.99998 2.23798 2.32961 2.94383 3.67249 3.70422 3.79442 3.94649 4.02436 4.13752 4.23801 4.53757 4.56231 4.64975 4.77362 4.80848 4.90743 5.00055 5.12003 5.36176 5.49148 5.61934 5.73906 5.97467 6.54335 6.72865 6.86763 7.16952 8.69720 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002409 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.546100 B =11619.994312 C =11738.506837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.162 3.838 3 C -0.322 4.322 4 C 0.561 3.439 5 O -0.539 6.539 6 O -0.344 6.344 7 C 0.088 3.912 8 C -0.101 4.101 9 C -0.037 4.037 10 Cl -0.040 7.040 11 Cl -0.022 7.022 12 C 0.098 3.902 13 N -0.336 5.336 14 N -0.334 5.334 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.268 1.268 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.178 0.822 30 H 0.226 0.774 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 23.720 1.750 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.025 3.975 3 C -0.335 4.335 4 C 0.409 3.591 5 O -0.430 6.430 6 O -0.260 6.260 7 C 0.014 3.986 8 C -0.121 4.121 9 C -0.090 4.090 10 Cl -0.012 7.012 11 Cl 0.006 6.994 12 C -0.089 4.089 13 N -0.155 5.155 14 N -0.110 5.110 15 C 0.147 3.853 16 C -0.594 4.594 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.193 1.193 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.195 0.805 30 H 0.242 0.758 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.664 22.516 1.717 22.877 hybrid contribution -0.549 0.250 -0.809 1.009 sum 3.115 22.766 0.909 22.996 Atomic orbital electron populations 1.20702 0.85127 1.04804 1.04696 1.21968 0.96119 0.86302 0.93075 1.19010 0.93857 0.89853 1.30781 1.19696 0.83270 0.84665 0.71513 1.90769 1.18464 1.84616 1.49173 1.86500 1.39165 1.15620 1.84763 1.22157 0.94477 0.76938 1.05013 1.22894 1.00476 0.91408 0.97329 1.24031 0.89242 0.97316 0.98403 1.98441 1.41823 1.95787 1.65179 1.98445 1.41501 1.62077 1.97392 1.24581 0.97834 0.91228 0.95245 1.77177 0.98216 1.14259 1.25865 1.49188 1.03411 1.07909 1.50515 1.19452 0.95595 0.71947 0.98267 1.21424 1.48041 0.98422 0.91543 0.92934 1.25700 0.93831 0.95938 1.02151 1.69996 1.44839 1.07554 1.32929 0.85314 0.78437 0.78185 0.78613 1.19720 1.19989 1.19329 0.88254 0.87945 0.90596 0.89837 0.87695 0.80454 0.75795 0.92624 0.94757 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.19 9.34 71.24 0.67 -2.53 16 2 C 0.16 6.32 7.01 42.17 0.30 6.62 16 3 C -0.32 -11.23 6.13 -20.16 -0.12 -11.36 16 4 C 0.56 17.26 7.95 70.20 0.56 17.82 16 5 O -0.54 -17.94 14.63 19.77 0.29 -17.65 16 6 O -0.34 -8.39 10.05 -56.67 -0.57 -8.96 16 7 C 0.09 1.64 5.67 71.24 0.40 2.05 16 8 C -0.10 -1.42 9.64 25.33 0.24 -1.17 16 9 C -0.04 -0.54 6.97 67.46 0.47 -0.07 16 10 Cl -0.04 -0.67 26.98 -2.72 -0.07 -0.74 16 11 Cl -0.02 -0.31 29.06 -2.72 -0.08 -0.38 16 12 C 0.10 3.32 11.87 85.67 1.02 4.34 16 13 N -0.34 -14.26 12.50 -56.25 -0.70 -14.96 16 14 N -0.33 -14.93 3.56 -336.67 -1.20 -16.13 16 15 C 0.27 13.25 5.78 85.64 0.50 13.75 16 16 C -0.56 -29.86 9.39 25.60 0.24 -29.62 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.03 1.34 5.46 84.66 0.46 1.81 16 19 N -0.92 -50.07 13.29 21.45 0.28 -49.78 16 20 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 25 H 0.10 3.27 6.51 -2.39 -0.02 3.25 16 26 H 0.08 2.70 7.70 -2.39 -0.02 2.69 16 27 H 0.08 1.69 6.19 -2.39 -0.01 1.68 16 28 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.23 5.42 8.06 -2.91 -0.02 5.39 16 31 H 0.06 2.74 7.62 -2.38 -0.02 2.72 16 32 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -61.10 330.79 5.86 -55.24 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.16 Total: 7.84 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.73 Total: 1.63 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.62 Total: -80.87 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.28 Total: -26.61 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.15 Total: -1.13 kcal Total: -61.10 5.86 -55.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893160552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.368 kcal (2) G-P(sol) polarization free energy of solvation -61.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds