Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47045 * 270.00383 * 3 2 1 5 5 H 1.48502 * 109.47155 * 29.99837 * 3 2 1 6 6 H 1.48490 * 109.47314 * 150.00161 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00270 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00004 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99927 * 5.06613 * 11 10 9 13 13 N 1.34781 * 119.99774 * 185.07173 * 11 10 9 14 14 O 1.41601 * 119.99731 * 5.22626 * 13 11 10 15 15 C 1.46498 * 119.99829 * 185.22132 * 13 11 10 16 16 C 1.50700 * 109.46586 * 75.00321 * 15 13 11 17 17 C 1.38227 * 119.98673 * 269.72094 * 16 15 13 18 18 C 1.38357 * 120.01082 * 179.77399 * 17 16 15 19 19 Cl 1.73600 * 120.00319 * 180.27661 * 18 17 16 20 20 C 1.38333 * 119.99154 * 0.52653 * 18 17 16 21 21 C 1.38327 * 119.96805 * 359.72675 * 20 18 17 22 22 Cl 1.73602 * 120.00505 * 179.97438 * 21 20 18 23 23 C 1.38227 * 119.99020 * 90.00122 * 16 15 13 24 24 H 0.96998 * 119.99486 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47203 * 59.99545 * 9 7 2 26 26 H 1.09001 * 109.47216 * 299.99752 * 9 7 2 27 27 H 0.97004 * 120.00165 * 359.97438 * 10 9 7 28 28 H 0.96693 * 114.00601 * 355.00220 * 14 13 11 29 29 H 1.08997 * 109.47179 * 315.00567 * 15 13 11 30 30 H 1.09000 * 109.47206 * 194.99521 * 15 13 11 31 31 H 1.07996 * 119.98871 * 359.97438 * 17 16 15 32 32 H 1.07993 * 120.01281 * 179.70508 * 20 18 17 33 33 H 1.07994 * 119.98781 * 359.97394 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3250 -2.8216 -0.0024 12 8 6.1143 -1.9016 0.0914 13 7 5.7750 -4.0878 -0.1066 14 8 4.8622 -5.1477 -0.3269 15 6 7.2085 -4.3674 0.0080 16 6 7.6260 -4.2662 1.4525 17 6 8.0618 -3.0577 1.9626 18 6 8.4408 -2.9631 3.2899 19 17 8.9813 -1.4436 3.9322 20 6 8.3939 -4.0808 4.1037 21 6 7.9626 -5.2911 3.5913 22 17 7.9040 -6.6944 4.6115 23 6 7.5785 -5.3832 2.2653 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6801 -0.8912 27 1 3.3695 -3.3126 -0.0021 28 1 3.9341 -4.8769 -0.3126 29 1 7.7684 -3.6431 -0.5836 30 1 7.4131 -5.3729 -0.3597 31 1 8.1034 -2.1864 1.3258 32 1 8.6941 -4.0084 5.1386 33 1 7.2418 -6.3281 1.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904183450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -7.672497 kcal Electronic energy + Delta-G solvation = -21585.574610 eV Core-core repulsion = 17893.673306 eV Total energy + Delta-G solvation = -3691.901304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21963 -39.28592 -36.92910 -36.66171 -36.35874 -34.77890 -33.32178 -32.36855 -30.83166 -30.64669 -28.24843 -25.99806 -23.03269 -22.68253 -21.65496 -20.41215 -19.37406 -17.56609 -16.68971 -16.52104 -16.15015 -15.98459 -15.45117 -14.83637 -14.62200 -14.55429 -14.02637 -13.90422 -13.70483 -13.35006 -12.86450 -12.52041 -12.50752 -12.41384 -12.19420 -12.12694 -11.72824 -11.28687 -11.22214 -11.09067 -11.07122 -10.83158 -10.06023 -9.88654 -9.56454 -9.13011 -8.92287 -8.87443 -8.70616 -8.17140 -6.27292 -4.30531 0.70576 0.82117 1.61738 2.06477 2.09871 3.22811 3.26921 3.30140 3.37804 3.41889 3.73701 4.28352 4.35262 4.68907 4.80984 4.83831 4.99351 5.08223 5.23636 5.31694 5.47001 5.68033 5.79287 5.92837 6.15128 6.30402 6.34574 6.58818 6.98714 7.01958 7.21806 7.48493 8.16850 8.48819 8.68331 8.82440 9.31795 10.84468 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.003710 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.342218 B = 7544.427825 C = 8444.443768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.720 5.720 11 C 0.690 3.310 12 O -0.576 6.576 13 N -0.495 5.495 14 O -0.338 6.338 15 C 0.204 3.796 16 C -0.092 4.092 17 C -0.068 4.068 18 C -0.029 4.029 19 Cl -0.057 7.057 20 C -0.098 4.098 21 C -0.032 4.032 22 Cl -0.063 7.063 23 C -0.083 4.083 24 H 0.269 0.731 25 H 0.027 0.973 26 H 0.021 0.979 27 H 0.388 0.612 28 H 0.387 0.613 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.709 -11.896 5.215 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.097 0.903 9 C 0.117 3.883 10 N -0.375 5.375 11 C 0.391 3.609 12 O -0.455 6.455 13 N -0.277 5.277 14 O -0.232 6.232 15 C 0.084 3.916 16 C -0.094 4.094 17 C -0.087 4.087 18 C -0.056 4.056 19 Cl -0.028 7.028 20 C -0.118 4.118 21 C -0.059 4.059 22 Cl -0.034 7.034 23 C -0.103 4.103 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.223 0.777 28 H 0.234 0.766 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.671 -11.393 5.351 22.517 hybrid contribution -0.813 0.609 0.303 1.060 sum 17.858 -10.784 5.655 21.614 Atomic orbital electron populations 1.69874 1.06222 1.27544 1.49069 1.24764 0.94784 0.99156 0.93738 0.86829 0.80653 0.83210 0.79103 1.19779 1.20827 1.18378 1.21042 0.88352 0.95280 1.53801 0.90260 1.19435 0.95088 0.76821 0.96936 1.45501 1.03390 1.11536 1.77073 1.16220 0.84321 0.81415 0.78929 1.90882 1.55148 1.40592 1.58851 1.48837 1.01656 0.98238 1.78997 1.88992 1.18456 1.19126 1.96617 1.20093 0.76466 1.04000 0.91088 1.20223 0.99238 0.92454 0.97468 1.21423 0.94815 0.98841 0.93615 1.20756 1.03139 0.87609 0.94132 1.98390 1.88260 1.29737 1.86440 1.20906 1.00271 0.89987 1.00631 1.20646 1.04574 0.88577 0.92136 1.98380 1.97100 1.39968 1.67926 1.21069 0.98111 0.99696 0.91395 0.92156 0.95496 0.96104 0.77699 0.76554 0.87800 0.87929 0.82775 0.84004 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.55 -14.49 9.83 -34.44 -0.34 -14.82 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.76 16 9 C 0.24 5.64 4.50 -5.20 -0.02 5.62 16 10 N -0.72 -13.86 5.48 -66.42 -0.36 -14.22 16 11 C 0.69 12.60 8.22 -86.91 -0.71 11.88 16 12 O -0.58 -11.91 14.14 5.30 0.07 -11.83 16 13 N -0.49 -7.11 3.77 -66.42 -0.25 -7.36 16 14 O -0.34 -4.22 14.99 -11.47 -0.17 -4.39 16 15 C 0.20 2.34 5.86 -5.19 -0.03 2.31 16 16 C -0.09 -1.09 5.25 -104.63 -0.55 -1.64 16 17 C -0.07 -0.89 8.70 -39.54 -0.34 -1.23 16 18 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 19 Cl -0.06 -0.70 28.96 -51.86 -1.50 -2.20 16 20 C -0.10 -1.09 9.62 -39.51 -0.38 -1.47 16 21 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 22 Cl -0.06 -0.62 28.96 -51.86 -1.50 -2.12 16 23 C -0.08 -0.90 9.49 -39.54 -0.38 -1.27 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.39 6.41 6.15 -40.82 -0.25 6.16 16 28 H 0.39 4.01 6.73 45.56 0.31 4.31 16 29 H 0.10 1.16 7.77 -51.93 -0.40 0.75 16 30 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.15 2.21 6.86 -52.49 -0.36 1.85 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -30.97 320.68 -8.45 -39.41 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -2.32 Total: 6.48 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -3.35 Total: 0.26 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.16 Total: -46.68 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.10 Total: -16.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -3.00 Total: -4.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.97 -8.45 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904183450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.742 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds