Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47045 * 270.00383 * 3 2 1 5 5 H 1.48502 * 109.47155 * 29.99837 * 3 2 1 6 6 H 1.48490 * 109.47314 * 150.00161 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00270 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00004 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99927 * 5.06613 * 11 10 9 13 13 N 1.34781 * 119.99774 * 185.07173 * 11 10 9 14 14 O 1.41601 * 119.99731 * 5.22626 * 13 11 10 15 15 C 1.46498 * 119.99829 * 185.22132 * 13 11 10 16 16 C 1.50700 * 109.46586 * 75.00321 * 15 13 11 17 17 C 1.38227 * 119.98673 * 269.72094 * 16 15 13 18 18 C 1.38357 * 120.01082 * 179.77399 * 17 16 15 19 19 Cl 1.73600 * 120.00319 * 180.27661 * 18 17 16 20 20 C 1.38333 * 119.99154 * 0.52653 * 18 17 16 21 21 C 1.38327 * 119.96805 * 359.72675 * 20 18 17 22 22 Cl 1.73602 * 120.00505 * 179.97438 * 21 20 18 23 23 C 1.38227 * 119.99020 * 90.00122 * 16 15 13 24 24 H 0.96998 * 119.99486 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47203 * 59.99545 * 9 7 2 26 26 H 1.09001 * 109.47216 * 299.99752 * 9 7 2 27 27 H 0.97004 * 120.00165 * 359.97438 * 10 9 7 28 28 H 0.96693 * 114.00601 * 355.00220 * 14 13 11 29 29 H 1.08997 * 109.47179 * 315.00567 * 15 13 11 30 30 H 1.09000 * 109.47206 * 194.99521 * 15 13 11 31 31 H 1.07996 * 119.98871 * 359.97438 * 17 16 15 32 32 H 1.07993 * 120.01281 * 179.70508 * 20 18 17 33 33 H 1.07994 * 119.98781 * 359.97394 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3250 -2.8216 -0.0024 12 8 6.1143 -1.9016 0.0914 13 7 5.7750 -4.0878 -0.1066 14 8 4.8622 -5.1477 -0.3269 15 6 7.2085 -4.3674 0.0080 16 6 7.6260 -4.2662 1.4525 17 6 8.0618 -3.0577 1.9626 18 6 8.4408 -2.9631 3.2899 19 17 8.9813 -1.4436 3.9322 20 6 8.3939 -4.0808 4.1037 21 6 7.9626 -5.2911 3.5913 22 17 7.9040 -6.6944 4.6115 23 6 7.5785 -5.3832 2.2653 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6801 -0.8912 27 1 3.3695 -3.3126 -0.0021 28 1 3.9341 -4.8769 -0.3126 29 1 7.7684 -3.6431 -0.5836 30 1 7.4131 -5.3729 -0.3597 31 1 8.1034 -2.1864 1.3258 32 1 8.6941 -4.0084 5.1386 33 1 7.2418 -6.3281 1.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904183450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -28.110039 kcal Electronic energy + Delta-G solvation = -21586.460849 eV Core-core repulsion = 17893.673306 eV Total energy + Delta-G solvation = -3692.787542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41195 -40.37411 -37.79954 -37.76116 -37.37010 -36.37931 -34.64055 -34.11342 -31.78796 -31.70352 -29.98980 -27.18172 -24.31390 -23.90920 -22.89938 -21.71647 -20.83392 -18.64526 -18.52566 -17.75057 -17.11656 -16.94476 -16.70023 -16.47325 -16.07801 -15.48920 -15.27154 -15.05262 -14.95938 -14.84854 -14.41266 -14.09445 -13.63890 -13.38913 -13.36933 -13.06974 -13.02778 -12.69878 -12.59872 -12.16604 -12.09417 -11.98779 -11.93131 -11.65267 -11.36647 -10.91236 -10.22520 -10.04794 -9.79346 -9.54371 -8.39024 -6.46103 -0.20599 -0.08416 0.74085 0.98175 1.20905 1.34590 1.37692 1.49378 1.97806 2.28760 2.35491 2.37888 2.97156 3.45573 3.86200 3.90973 3.92780 4.09779 4.31768 4.38278 4.58987 4.65267 4.80182 4.92567 5.00933 5.04984 5.15597 5.24160 5.27953 5.40044 5.45919 5.96484 6.25018 6.56893 7.11675 7.18559 7.40177 8.75509 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.003710 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.342218 B = 7544.427825 C = 8444.443768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.254 3.746 10 N -0.723 5.723 11 C 0.687 3.313 12 O -0.604 6.604 13 N -0.486 5.486 14 O -0.329 6.329 15 C 0.199 3.801 16 C -0.096 4.096 17 C -0.082 4.082 18 C -0.040 4.040 19 Cl -0.062 7.062 20 C -0.097 4.097 21 C -0.036 4.036 22 Cl -0.051 7.051 23 C -0.077 4.077 24 H 0.272 0.728 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.401 0.599 28 H 0.396 0.604 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.799 -13.096 5.347 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.379 5.379 11 C 0.389 3.611 12 O -0.484 6.484 13 N -0.267 5.267 14 O -0.224 6.224 15 C 0.079 3.921 16 C -0.098 4.098 17 C -0.102 4.102 18 C -0.067 4.067 19 Cl -0.033 7.033 20 C -0.116 4.116 21 C -0.063 4.063 22 Cl -0.022 7.022 23 C -0.096 4.096 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.237 0.763 28 H 0.246 0.754 29 H 0.123 0.877 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.174 0.826 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 19.782 -12.651 5.481 24.112 hybrid contribution -1.145 0.823 0.290 1.440 sum 18.636 -11.828 5.771 22.815 Atomic orbital electron populations 1.69977 1.07706 1.28598 1.50654 1.25543 0.95469 1.02557 0.93583 0.85906 0.79370 0.79427 0.79520 1.18831 1.20153 1.18250 1.21265 0.89878 0.94624 1.52695 0.92086 1.18983 0.93059 0.79080 0.95872 1.45181 1.04424 1.10362 1.77903 1.16264 0.83497 0.82588 0.78763 1.90870 1.55620 1.42105 1.59788 1.48759 1.02885 0.97500 1.77520 1.89006 1.19073 1.17820 1.96521 1.20415 0.74491 1.05994 0.91153 1.20225 0.99467 0.92334 0.97748 1.21380 0.96014 0.98914 0.93870 1.20836 1.03768 0.87927 0.94180 1.98384 1.88338 1.30133 1.86419 1.21082 0.99681 0.89676 1.01202 1.20751 1.04164 0.88876 0.92462 1.98388 1.97013 1.39181 1.67587 1.21269 0.97160 1.00042 0.91178 0.91871 0.96943 0.96673 0.76269 0.75442 0.87718 0.84519 0.84576 0.82551 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.96 21.45 0.30 -54.19 16 2 C 0.03 1.60 5.47 84.65 0.46 2.06 16 3 Si 0.93 42.94 27.47 68.60 1.88 44.82 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 7 C -0.55 -29.06 9.83 25.60 0.25 -28.81 16 8 H 0.06 3.39 7.84 -2.91 -0.02 3.36 16 9 C 0.25 11.88 4.50 85.63 0.39 12.27 16 10 N -0.72 -27.23 5.48 -482.30 -2.64 -29.87 16 11 C 0.69 24.37 8.22 179.05 1.47 25.85 16 12 O -0.60 -24.71 14.14 -3.97 -0.06 -24.76 16 13 N -0.49 -12.96 3.77 -482.30 -1.82 -14.78 16 14 O -0.33 -7.30 14.99 -38.79 -0.58 -7.88 16 15 C 0.20 4.11 5.86 85.63 0.50 4.61 16 16 C -0.10 -2.10 5.25 -19.87 -0.10 -2.21 16 17 C -0.08 -2.11 8.70 22.30 0.19 -1.92 16 18 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16 19 Cl -0.06 -1.48 28.96 -2.72 -0.08 -1.56 16 20 C -0.10 -2.00 9.62 22.31 0.21 -1.79 16 21 C -0.04 -0.70 6.32 22.32 0.14 -0.55 16 22 Cl -0.05 -0.88 28.96 -2.72 -0.08 -0.96 16 23 C -0.08 -1.47 9.49 22.30 0.21 -1.26 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 26 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 27 H 0.40 12.83 6.15 -92.71 -0.57 12.26 16 28 H 0.40 7.30 6.73 -74.06 -0.50 6.80 16 29 H 0.10 2.18 7.77 -2.39 -0.02 2.16 16 30 H 0.14 1.88 8.08 -2.39 -0.02 1.86 16 31 H 0.14 3.98 6.86 -2.91 -0.02 3.96 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -65.43 320.68 0.86 -64.57 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.06 Total: 17.19 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 3.87 Total: 7.42 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -4.16 Total: -98.84 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.64 Total: -32.64 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.16 Total: -2.52 kcal Total: -65.43 0.86 -64.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904183450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.460 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds