Wall clock time and date at job start Tue Mar 31 2020 11:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37879 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99452 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34799 * 116.99660 * 180.02562 * 12 11 10 14 14 O 1.21564 * 120.00133 * 359.97438 * 13 12 11 15 15 C 1.47031 * 120.00148 * 179.97438 * 13 12 11 16 16 C 1.36072 * 123.46776 * 0.02562 * 15 13 12 17 17 S 1.70442 * 110.82761 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.46162 * 0.02562 * 17 16 15 19 19 Br 1.89100 * 124.70383 * 180.02562 * 18 17 16 20 20 C 1.32835 * 110.58600 * 359.73652 * 18 17 16 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 23 23 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 24 24 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 25 25 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 26 26 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 27 27 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 28 28 H 1.08005 * 124.59072 * 0.02562 * 16 15 13 29 29 H 1.08001 * 123.46270 * 180.23348 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 8 6.0357 -4.0054 0.0015 13 6 7.3720 -4.1819 0.0030 14 8 8.1125 -3.2179 0.0043 15 6 7.9341 -5.5406 0.0029 16 6 7.1721 -6.6679 0.0009 17 16 8.1525 -8.0621 0.0008 18 6 9.6302 -7.1152 0.0043 19 35 11.3754 -7.8432 0.0055 20 6 9.3525 -5.8162 -0.0003 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6801 0.8912 23 1 3.8753 -0.6803 -0.8888 24 1 3.6588 -3.1501 -0.8893 25 1 3.6579 -3.1505 0.8907 26 1 5.9157 -2.1223 -0.8873 27 1 5.9142 -2.1229 0.8927 28 1 6.0921 -6.6780 -0.0012 29 1 10.1091 -5.0455 -0.0030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914627265.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:35 Heat of formation + Delta-G solvation = -65.959693 kcal Electronic energy + Delta-G solvation = -15452.820135 eV Core-core repulsion = 12513.714578 eV Total energy + Delta-G solvation = -2939.105557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37956 -37.78666 -36.36023 -34.11779 -32.52341 -31.84197 -29.34618 -27.65999 -25.58406 -23.20271 -21.74979 -20.38104 -19.67688 -18.13653 -17.61915 -16.87796 -16.43645 -16.14470 -14.66486 -14.46349 -14.22165 -13.71701 -13.69828 -13.21145 -12.95192 -12.74300 -12.40639 -11.98633 -11.78545 -11.40556 -11.08901 -11.00470 -10.78240 -10.65044 -10.48236 -10.04817 -9.85105 -9.75686 -9.34354 -9.27737 -8.98037 -8.58947 -6.09290 -4.08580 0.15165 0.52815 1.18157 1.30207 1.31281 2.75828 2.88558 3.28452 3.36257 3.39492 4.41069 4.45569 4.75434 4.83671 5.15580 5.24064 5.35936 5.41701 5.44257 5.61270 5.82422 6.27152 6.34662 6.59407 6.75101 7.17556 7.29242 7.68975 7.78337 8.47033 8.94654 9.52205 11.03834 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.049205 B = 0.002238 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.910872 B =12506.751551 C =13049.913018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.067 3.933 12 O -0.351 6.351 13 C 0.525 3.475 14 O -0.506 6.506 15 C -0.146 4.146 16 C -0.168 4.168 17 S 0.255 5.745 18 C -0.237 4.237 19 Br 0.015 6.985 20 C -0.036 4.036 21 H 0.264 0.736 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.191 0.809 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.819 -20.552 0.019 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.006 4.006 12 O -0.268 6.268 13 C 0.367 3.633 14 O -0.395 6.395 15 C -0.162 4.162 16 C -0.307 4.307 17 S 0.520 5.480 18 C -0.432 4.432 19 Br 0.099 6.901 20 C -0.068 4.068 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 24.193 -21.946 0.021 32.664 hybrid contribution 0.209 2.867 -0.021 2.874 sum 24.401 -19.080 0.000 30.975 Atomic orbital electron populations 1.69904 1.06294 1.27014 1.50769 1.25009 0.94746 0.99172 0.94403 0.86790 0.80388 0.83580 0.78625 1.20184 1.21243 1.18968 1.21047 0.89018 0.94680 1.51340 0.90799 1.19521 0.97549 0.91002 0.96740 1.21572 0.88587 1.00897 1.02845 1.23558 0.97065 0.77604 1.02339 1.86543 1.22186 1.34641 1.83395 1.20211 0.81536 0.88308 0.73253 1.90859 1.60685 1.42136 1.45863 1.19342 0.92306 0.91501 1.13098 1.26215 1.06502 0.97003 1.00993 1.83232 0.91181 1.05740 1.67830 1.25919 0.97612 0.99174 1.20517 1.96755 1.11694 1.83666 1.98019 1.21137 0.94763 0.94954 0.95920 0.92616 0.96225 0.96665 0.91491 0.91473 0.91313 0.91296 0.79179 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.27 -6.24 6.54 56.52 0.37 -5.88 15 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 15 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 15 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 15 10 C -0.10 -1.96 5.53 -26.73 -0.15 -2.11 15 11 C 0.07 1.15 5.48 37.16 0.20 1.35 15 12 O -0.35 -5.50 9.87 -40.76 -0.40 -5.90 15 13 C 0.52 7.85 7.92 34.29 0.27 8.12 15 14 O -0.51 -8.80 16.59 -19.32 -0.32 -9.12 15 15 C -0.15 -1.70 5.98 -104.65 -0.63 -2.33 15 16 C -0.17 -1.52 10.55 29.95 0.32 -1.21 15 17 S 0.26 1.84 23.02 -107.50 -2.47 -0.64 15 18 C -0.24 -2.09 6.88 28.87 0.20 -1.89 15 19 Br 0.02 0.12 34.05 -68.01 -2.32 -2.20 15 20 C -0.04 -0.37 10.01 -38.98 -0.39 -0.76 15 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 22 H 0.02 0.46 7.20 -51.93 -0.37 0.08 15 23 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 15 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.19 1.48 8.02 -52.48 -0.42 1.06 15 29 H 0.16 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -31.29 296.94 -8.54 -39.82 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -2.89 Total: -4.15 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.72 Total: -12.37 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.72 Total: -15.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.47 Total: -0.64 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -2.32 Total: -2.20 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.29 -8.54 -39.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627265.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.137 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds