Wall clock time and date at job start Tue Mar 31 2020 11:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37879 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99452 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34799 * 116.99660 * 180.02562 * 12 11 10 14 14 O 1.21564 * 120.00133 * 359.97438 * 13 12 11 15 15 C 1.47031 * 120.00148 * 179.97438 * 13 12 11 16 16 C 1.36072 * 123.46776 * 0.02562 * 15 13 12 17 17 S 1.70442 * 110.82761 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.46162 * 0.02562 * 17 16 15 19 19 Br 1.89100 * 124.70383 * 180.02562 * 18 17 16 20 20 C 1.32835 * 110.58600 * 359.73652 * 18 17 16 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 23 23 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 24 24 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 25 25 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 26 26 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 27 27 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 28 28 H 1.08005 * 124.59072 * 0.02562 * 16 15 13 29 29 H 1.08001 * 123.46270 * 180.23348 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 8 6.0357 -4.0054 0.0015 13 6 7.3720 -4.1819 0.0030 14 8 8.1125 -3.2179 0.0043 15 6 7.9341 -5.5406 0.0029 16 6 7.1721 -6.6679 0.0009 17 16 8.1525 -8.0621 0.0008 18 6 9.6302 -7.1152 0.0043 19 35 11.3754 -7.8432 0.0055 20 6 9.3525 -5.8162 -0.0003 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6801 0.8912 23 1 3.8753 -0.6803 -0.8888 24 1 3.6588 -3.1501 -0.8893 25 1 3.6579 -3.1505 0.8907 26 1 5.9157 -2.1223 -0.8873 27 1 5.9142 -2.1229 0.8927 28 1 6.0921 -6.6780 -0.0012 29 1 10.1091 -5.0455 -0.0030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914627265.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:34 Heat of formation + Delta-G solvation = -83.503460 kcal Electronic energy + Delta-G solvation = -15453.580890 eV Core-core repulsion = 12513.714578 eV Total energy + Delta-G solvation = -2939.866312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53777 -38.67354 -37.57849 -35.93935 -33.90877 -33.14848 -30.23362 -29.27071 -26.63030 -24.77852 -22.81201 -22.07891 -20.61816 -19.11760 -18.81173 -18.65028 -17.70537 -17.26602 -16.28897 -15.81132 -15.51192 -14.81183 -14.65539 -14.42119 -14.37889 -13.90986 -13.83229 -13.60386 -12.87165 -12.66632 -12.55037 -12.11540 -12.08526 -12.02060 -11.77162 -11.52099 -11.41508 -11.40589 -11.35999 -10.77609 -10.02920 -9.66140 -8.30426 -6.35396 -0.60717 -0.12823 0.41944 0.50811 0.59595 1.36973 1.38528 1.50032 1.62815 1.86560 2.35548 3.04997 3.67363 3.76102 3.99701 4.01668 4.05552 4.35809 4.40578 4.61351 4.71229 4.73566 4.88526 4.95860 5.26676 5.46836 5.48592 5.61933 6.25387 6.59743 6.72655 7.29338 8.86046 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.049205 B = 0.002238 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.910872 B =12506.751551 C =13049.913018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.037 0.963 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.076 3.924 12 O -0.351 6.351 13 C 0.525 3.475 14 O -0.538 6.538 15 C -0.176 4.176 16 C -0.164 4.164 17 S 0.333 5.667 18 C -0.248 4.248 19 Br 0.025 6.975 20 C -0.046 4.046 21 H 0.267 0.733 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.203 0.797 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.603 -21.454 0.005 33.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.055 0.945 9 C -0.048 4.048 10 C -0.129 4.129 11 C 0.002 3.998 12 O -0.268 6.268 13 C 0.370 3.630 14 O -0.430 6.430 15 C -0.193 4.193 16 C -0.303 4.303 17 S 0.599 5.401 18 C -0.443 4.443 19 Br 0.109 6.891 20 C -0.078 4.078 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.221 0.779 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 25.998 -22.883 0.006 34.634 hybrid contribution -0.373 2.923 -0.017 2.947 sum 25.625 -19.960 -0.011 32.482 Atomic orbital electron populations 1.70054 1.08268 1.28248 1.52389 1.25975 0.95595 1.03430 0.94009 0.85693 0.79554 0.78348 0.79295 1.19100 1.20894 1.16991 1.21407 0.91684 0.93404 1.50757 0.94487 1.19455 0.94328 0.93760 0.97228 1.21323 0.90418 0.98406 1.02757 1.23245 0.95244 0.78592 1.02701 1.86519 1.23078 1.33514 1.83669 1.20741 0.80727 0.89435 0.72094 1.90835 1.61014 1.43416 1.47694 1.19180 0.93105 0.90314 1.16667 1.26498 1.07513 0.97419 0.98874 1.83047 0.88831 1.03168 1.65103 1.26124 0.99090 0.99258 1.19869 1.96771 1.11181 1.83186 1.97966 1.21066 0.94203 0.95578 0.96907 0.92395 0.95630 0.95736 0.91618 0.91649 0.90961 0.91027 0.77949 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 15 2 C 0.01 0.41 5.47 84.66 0.46 0.87 15 3 Si 0.95 43.86 27.47 68.60 1.88 45.75 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 15 7 C -0.53 -30.52 9.66 25.60 0.25 -30.27 15 8 H 0.04 2.31 7.99 -2.91 -0.02 2.28 15 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 15 10 C -0.09 -3.48 5.53 30.60 0.17 -3.31 15 11 C 0.08 2.49 5.48 71.98 0.39 2.89 15 12 O -0.35 -10.68 9.87 -57.10 -0.56 -11.25 15 13 C 0.53 15.45 7.92 70.13 0.56 16.00 15 14 O -0.54 -18.68 16.59 19.63 0.33 -18.35 15 15 C -0.18 -3.91 5.98 -19.88 -0.12 -4.03 15 16 C -0.16 -2.61 10.55 67.32 0.71 -1.90 15 17 S 0.33 3.81 23.02 -56.49 -1.30 2.51 15 18 C -0.25 -3.89 6.88 66.64 0.46 -3.43 15 19 Br 0.03 0.35 34.05 -20.37 -0.69 -0.35 15 20 C -0.05 -0.91 10.01 22.69 0.23 -0.69 15 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 22 H 0.03 1.14 7.20 -2.39 -0.02 1.12 15 23 H 0.02 1.08 7.57 -2.39 -0.02 1.06 15 24 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 28 H 0.20 2.65 8.02 -2.91 -0.02 2.63 15 29 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -67.74 296.94 4.29 -63.45 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.11 Total: 1.35 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.23 Total: -24.22 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.24 Total: -29.60 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -0.69 Total: -0.35 kcal Total: -67.74 4.29 -63.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627265.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds