Wall clock time and date at job start Tue Mar 31 2020 11:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00132 * 2 1 4 4 C 1.46901 * 110.99773 * 123.95141 * 2 1 3 5 5 C 1.53003 * 108.76931 * 62.16598 * 4 2 1 6 6 N 1.46500 * 109.47455 * 50.68206 * 5 4 2 7 7 C 1.38818 * 120.00128 * 184.84564 * 6 5 4 8 8 C 1.39793 * 119.58582 * 0.02562 * 7 6 5 9 9 C 1.38595 * 119.49473 * 179.97438 * 8 7 6 10 10 C 1.38391 * 118.67883 * 359.97438 * 9 8 7 11 11 C 1.40563 * 119.14888 * 359.97438 * 10 9 8 12 12 C 1.41309 * 119.78309 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00470 * 0.02562 * 12 11 10 14 14 C 1.40029 * 119.99941 * 180.02562 * 12 11 10 15 15 N 1.30743 * 119.99743 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00074 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47315 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46871 * 120.00109 * 16 14 12 19 19 H 1.48492 * 109.47084 * 240.00059 * 16 14 12 20 20 N 1.31955 * 119.58176 * 179.72738 * 7 6 5 21 21 C 1.54059 * 108.87999 * 303.64906 * 4 2 1 22 22 C 1.54069 * 112.73625 * 197.55503 * 21 4 2 23 23 C 1.50397 * 112.53679 * 318.12374 * 22 21 4 24 24 C 1.54234 * 108.42768 * 94.28267 * 23 22 21 25 25 C 1.45547 * 112.40689 * 280.03135 * 24 23 22 26 26 C 1.50478 * 108.87537 * 180.67098 * 4 2 1 27 27 H 1.08999 * 109.47168 * 292.10074 * 1 2 3 28 28 H 1.08999 * 109.47039 * 52.10040 * 1 2 3 29 29 H 1.08999 * 109.47317 * 172.10480 * 1 2 3 30 30 H 1.09000 * 109.47298 * 183.94929 * 3 2 1 31 31 H 1.09000 * 109.47587 * 303.95293 * 3 2 1 32 32 H 1.09004 * 109.46949 * 63.95358 * 3 2 1 33 33 H 1.09002 * 109.47214 * 170.68575 * 5 4 2 34 34 H 1.09005 * 109.46616 * 290.68445 * 5 4 2 35 35 H 0.97006 * 119.99644 * 4.85672 * 6 5 4 36 36 H 1.08002 * 120.25582 * 359.94973 * 8 7 6 37 37 H 1.07996 * 120.66495 * 180.02562 * 9 8 7 38 38 H 1.07994 * 120.42684 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99834 * 179.97438 * 15 14 12 40 40 H 1.09001 * 108.81612 * 318.36828 * 21 4 2 41 41 H 1.09007 * 108.81246 * 76.75339 * 21 4 2 42 42 H 1.08999 * 108.87328 * 79.00666 * 22 21 4 43 43 H 1.09003 * 108.87648 * 197.44975 * 22 21 4 44 44 H 1.08998 * 109.65741 * 334.60717 * 23 22 21 45 45 H 1.09003 * 109.85142 * 214.06653 * 23 22 21 46 46 H 1.09002 * 108.89600 * 159.27678 * 24 23 22 47 47 H 1.08995 * 108.89471 * 40.78645 * 24 23 22 48 48 H 1.08993 * 108.89446 * 301.18127 * 25 24 23 49 49 H 1.08999 * 108.89421 * 182.68947 * 25 24 23 50 50 H 1.08996 * 109.62917 * 334.64420 * 26 4 2 51 51 H 1.09007 * 109.62460 * 95.02876 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5403 -2.2207 1.0045 6 7 1.8575 -2.7106 -0.3392 7 6 1.4474 -3.9777 -0.7308 8 6 0.7317 -4.7787 0.1638 9 6 0.3227 -6.0432 -0.2293 10 6 0.6378 -6.4763 -1.5054 11 6 1.3590 -5.6238 -2.3592 12 6 1.6874 -6.0522 -3.6651 13 1 1.3840 -7.0316 -4.0045 14 6 2.4061 -5.2069 -4.5192 15 7 2.7738 -4.0214 -4.1082 16 14 2.8397 -5.7729 -6.2458 17 1 2.3118 -7.1435 -6.4646 18 1 2.2357 -4.8463 -7.2367 19 1 4.3156 -5.7785 -6.4089 20 7 1.7330 -4.4086 -1.9449 21 6 1.4199 -0.1809 2.4415 22 6 2.2167 -0.6089 3.6888 23 6 2.6125 -2.0594 3.6503 24 6 4.0347 -2.1613 3.0623 25 6 4.0421 -2.0720 1.6095 26 6 3.4990 -0.7210 1.1008 27 1 -0.3633 0.3866 0.9521 28 1 -0.3633 0.6313 -0.8109 29 1 -0.3634 -1.0179 -0.1412 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 2.0559 -2.8319 1.7452 34 1 0.4644 -2.2812 1.1687 35 1 2.3543 -2.1496 -0.9552 36 1 0.4996 -4.4151 1.1540 37 1 -0.2316 -6.6777 0.4464 38 1 0.3334 -7.4566 -1.8409 39 1 3.2720 -3.4360 -4.6998 40 1 1.4308 0.9069 2.3736 41 1 0.3883 -0.5154 2.5516 42 1 3.1169 0.0017 3.7588 43 1 1.6054 -0.4354 4.5744 44 1 1.9155 -2.6130 3.0212 45 1 2.6028 -2.4726 4.6589 46 1 4.4721 -3.1144 3.3596 47 1 4.6433 -1.3536 3.4687 48 1 3.4272 -2.8751 1.2034 49 1 5.0645 -2.1981 1.2534 50 1 3.8353 -0.5530 0.0777 51 1 3.8570 0.0854 1.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116285405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:20 Heat of formation + Delta-G solvation = 74.027720 kcal Electronic energy + Delta-G solvation = -28705.553878 eV Core-core repulsion = 25219.970087 eV Total energy + Delta-G solvation = -3485.583792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.89652 -37.95573 -36.41700 -34.54960 -33.12129 -32.24349 -30.90199 -30.23644 -29.00736 -27.64107 -25.98740 -25.23234 -24.80577 -24.02270 -22.06926 -21.33545 -20.57033 -19.74854 -17.95334 -17.23626 -16.67288 -16.14660 -15.75451 -15.16778 -14.73287 -14.48564 -14.34220 -14.16477 -13.99175 -13.70506 -13.58866 -13.13595 -12.90569 -12.75047 -12.66376 -12.49984 -12.02666 -11.88897 -11.84267 -11.81680 -11.54687 -11.20879 -11.08167 -10.89521 -10.84446 -10.74440 -10.54227 -10.34947 -10.32593 -10.24347 -10.20686 -9.80236 -9.74239 -9.31897 -8.69554 -8.11574 -7.78641 -7.37532 -6.30783 -6.21759 -4.37528 2.94740 3.17149 3.21473 3.34763 3.39378 3.94630 4.05817 4.41234 4.58281 4.71526 4.91691 4.93962 5.01525 5.11065 5.18990 5.27144 5.29619 5.41234 5.43557 5.45173 5.60565 5.66298 5.72029 5.80898 5.90951 5.92115 5.95637 6.02146 6.06833 6.09028 6.18423 6.19967 6.21635 6.25070 6.26413 6.33962 6.40609 6.53007 6.67352 6.72801 6.98619 6.99775 7.05706 7.19024 7.22919 7.36913 7.72315 7.93105 8.04225 8.30362 8.52521 8.89310 8.93789 9.27817 10.36845 10.52466 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.004080 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.253677 B = 6861.267362 C = 7455.325214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.526 5.526 3 C 0.019 3.981 4 C 0.108 3.892 5 C 0.128 3.872 6 N -0.721 5.721 7 C 0.414 3.586 8 C -0.371 4.371 9 C -0.032 4.032 10 C -0.321 4.321 11 C 0.294 3.706 12 C -0.436 4.436 13 H 0.081 0.919 14 C 0.072 3.928 15 N -0.712 5.712 16 Si 0.901 3.099 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.275 1.275 20 N -0.530 5.530 21 C -0.142 4.142 22 C -0.108 4.108 23 C -0.145 4.145 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.100 4.100 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.268 0.732 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.098 0.902 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 10.594 12.013 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.129 4.129 4 C 0.019 3.981 5 C 0.003 3.997 6 N -0.358 5.358 7 C 0.174 3.826 8 C -0.397 4.397 9 C -0.056 4.056 10 C -0.344 4.344 11 C 0.166 3.834 12 C -0.469 4.469 13 H 0.099 0.901 14 C -0.153 4.153 15 N -0.334 5.334 16 Si 0.726 3.274 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.252 5.252 21 C -0.182 4.182 22 C -0.146 4.146 23 C -0.182 4.182 24 C -0.149 4.149 25 C -0.182 4.182 26 C -0.138 4.138 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.489 11.087 11.102 15.761 hybrid contribution -0.509 -0.032 0.389 0.642 sum 0.979 11.055 11.491 15.976 Atomic orbital electron populations 1.22430 0.87528 1.03143 0.99566 1.62312 1.08009 1.13018 1.41512 1.22450 1.01106 0.89381 0.99963 1.21059 0.95476 0.93731 0.87879 1.22042 0.98790 0.92063 0.86788 1.44058 1.63071 1.14821 1.13857 1.18564 0.88779 0.84971 0.90327 1.20583 1.19532 0.98920 1.00701 1.20564 0.95732 0.94347 0.94997 1.21505 1.14458 1.01840 0.96565 1.18200 0.86717 0.86127 0.92317 1.19588 1.29875 1.01399 0.95999 0.90069 1.26025 0.94879 0.94524 0.99861 1.70173 1.23038 1.05699 1.34459 0.86379 0.78706 0.79958 0.82350 1.18544 1.20039 1.20030 1.68246 1.28340 1.16529 1.12042 1.22577 1.00080 1.00619 0.94914 1.21204 0.99816 0.96817 0.96808 1.21847 0.98055 0.96951 1.01310 1.20460 0.96506 1.01450 0.96509 1.20820 1.02236 0.99156 0.95962 1.21361 0.93103 0.97517 1.01796 0.95763 0.91901 0.90578 0.91198 0.91679 0.95826 0.89577 0.93950 0.76066 0.89611 0.89271 0.88990 0.92094 0.91871 0.91845 0.92261 0.92658 0.89175 0.92168 0.92487 0.92883 0.88407 0.92450 0.90506 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.82 60.06 0.53 0.81 16 2 N -0.53 -7.06 3.95 -236.23 -0.93 -7.99 16 3 C 0.02 0.21 8.97 60.06 0.54 0.75 16 4 C 0.11 1.38 0.10 -132.31 -0.01 1.36 16 5 C 0.13 2.00 1.59 -4.04 -0.01 2.00 16 6 N -0.72 -14.37 4.40 -60.39 -0.27 -14.64 16 7 C 0.41 10.11 7.65 -155.33 -1.19 8.92 16 8 C -0.37 -8.63 9.32 -38.87 -0.36 -8.99 16 9 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 10 C -0.32 -8.29 9.83 -38.65 -0.38 -8.67 16 11 C 0.29 8.32 6.55 -85.00 -0.56 7.76 16 12 C -0.44 -12.06 9.14 -37.74 -0.34 -12.41 16 13 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 14 C 0.07 1.88 5.50 -17.34 -0.10 1.79 16 15 N -0.71 -19.26 11.46 55.55 0.64 -18.63 16 16 Si 0.90 19.13 29.56 -169.99 -5.02 14.10 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 N -0.53 -14.76 7.89 -10.33 -0.08 -14.85 16 21 C -0.14 -1.54 3.71 -25.62 -0.10 -1.63 16 22 C -0.11 -1.06 5.30 -27.47 -0.15 -1.21 16 23 C -0.14 -1.55 5.57 -27.38 -0.15 -1.71 16 24 C -0.11 -1.26 5.22 -29.60 -0.15 -1.41 16 25 C -0.14 -1.91 5.09 -29.60 -0.15 -2.06 16 26 C -0.10 -1.25 3.34 -27.34 -0.09 -1.34 16 27 H 0.02 0.28 6.35 -51.93 -0.33 -0.05 16 28 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.08 1.19 6.72 -51.93 -0.35 0.84 16 30 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 31 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.02 0.24 6.19 -51.93 -0.32 -0.08 16 33 H 0.09 1.33 2.65 -51.93 -0.14 1.20 16 34 H 0.04 0.70 6.23 -51.93 -0.32 0.38 16 35 H 0.40 8.49 7.94 -40.82 -0.32 8.17 16 36 H 0.09 1.78 6.67 -52.49 -0.35 1.43 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 40 H 0.06 0.65 5.95 -51.93 -0.31 0.34 16 41 H 0.06 0.71 6.87 -51.93 -0.36 0.35 16 42 H 0.06 0.56 6.62 -51.93 -0.34 0.22 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.11 4.18 -51.93 -0.22 0.89 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.54 7.47 -51.93 -0.39 0.15 16 48 H 0.10 1.58 4.23 -51.93 -0.22 1.36 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.07 7.27 -51.93 -0.38 0.69 16 51 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -29.04 364.25 -11.22 -40.26 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -7.97 Total: 13.44 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -3.07 Total: -17.19 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.64 Total: -56.10 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.04 -11.22 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116285405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.283 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds