Wall clock time and date at job start Tue Mar 31 2020 11:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00132 * 2 1 4 4 C 1.46901 * 110.99773 * 123.95141 * 2 1 3 5 5 C 1.53003 * 108.76931 * 62.16598 * 4 2 1 6 6 N 1.46500 * 109.47455 * 50.68206 * 5 4 2 7 7 C 1.38818 * 120.00128 * 184.84564 * 6 5 4 8 8 C 1.39793 * 119.58582 * 0.02562 * 7 6 5 9 9 C 1.38595 * 119.49473 * 179.97438 * 8 7 6 10 10 C 1.38391 * 118.67883 * 359.97438 * 9 8 7 11 11 C 1.40563 * 119.14888 * 359.97438 * 10 9 8 12 12 C 1.41309 * 119.78309 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00470 * 0.02562 * 12 11 10 14 14 C 1.40029 * 119.99941 * 180.02562 * 12 11 10 15 15 N 1.30743 * 119.99743 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00074 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47315 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46871 * 120.00109 * 16 14 12 19 19 H 1.48492 * 109.47084 * 240.00059 * 16 14 12 20 20 N 1.31955 * 119.58176 * 179.72738 * 7 6 5 21 21 C 1.54059 * 108.87999 * 303.64906 * 4 2 1 22 22 C 1.54069 * 112.73625 * 197.55503 * 21 4 2 23 23 C 1.50397 * 112.53679 * 318.12374 * 22 21 4 24 24 C 1.54234 * 108.42768 * 94.28267 * 23 22 21 25 25 C 1.45547 * 112.40689 * 280.03135 * 24 23 22 26 26 C 1.50478 * 108.87537 * 180.67098 * 4 2 1 27 27 H 1.08999 * 109.47168 * 292.10074 * 1 2 3 28 28 H 1.08999 * 109.47039 * 52.10040 * 1 2 3 29 29 H 1.08999 * 109.47317 * 172.10480 * 1 2 3 30 30 H 1.09000 * 109.47298 * 183.94929 * 3 2 1 31 31 H 1.09000 * 109.47587 * 303.95293 * 3 2 1 32 32 H 1.09004 * 109.46949 * 63.95358 * 3 2 1 33 33 H 1.09002 * 109.47214 * 170.68575 * 5 4 2 34 34 H 1.09005 * 109.46616 * 290.68445 * 5 4 2 35 35 H 0.97006 * 119.99644 * 4.85672 * 6 5 4 36 36 H 1.08002 * 120.25582 * 359.94973 * 8 7 6 37 37 H 1.07996 * 120.66495 * 180.02562 * 9 8 7 38 38 H 1.07994 * 120.42684 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99834 * 179.97438 * 15 14 12 40 40 H 1.09001 * 108.81612 * 318.36828 * 21 4 2 41 41 H 1.09007 * 108.81246 * 76.75339 * 21 4 2 42 42 H 1.08999 * 108.87328 * 79.00666 * 22 21 4 43 43 H 1.09003 * 108.87648 * 197.44975 * 22 21 4 44 44 H 1.08998 * 109.65741 * 334.60717 * 23 22 21 45 45 H 1.09003 * 109.85142 * 214.06653 * 23 22 21 46 46 H 1.09002 * 108.89600 * 159.27678 * 24 23 22 47 47 H 1.08995 * 108.89471 * 40.78645 * 24 23 22 48 48 H 1.08993 * 108.89446 * 301.18127 * 25 24 23 49 49 H 1.08999 * 108.89421 * 182.68947 * 25 24 23 50 50 H 1.08996 * 109.62917 * 334.64420 * 26 4 2 51 51 H 1.09007 * 109.62460 * 95.02876 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5403 -2.2207 1.0045 6 7 1.8575 -2.7106 -0.3392 7 6 1.4474 -3.9777 -0.7308 8 6 0.7317 -4.7787 0.1638 9 6 0.3227 -6.0432 -0.2293 10 6 0.6378 -6.4763 -1.5054 11 6 1.3590 -5.6238 -2.3592 12 6 1.6874 -6.0522 -3.6651 13 1 1.3840 -7.0316 -4.0045 14 6 2.4061 -5.2069 -4.5192 15 7 2.7738 -4.0214 -4.1082 16 14 2.8397 -5.7729 -6.2458 17 1 2.3118 -7.1435 -6.4646 18 1 2.2357 -4.8463 -7.2367 19 1 4.3156 -5.7785 -6.4089 20 7 1.7330 -4.4086 -1.9449 21 6 1.4199 -0.1809 2.4415 22 6 2.2167 -0.6089 3.6888 23 6 2.6125 -2.0594 3.6503 24 6 4.0347 -2.1613 3.0623 25 6 4.0421 -2.0720 1.6095 26 6 3.4990 -0.7210 1.1008 27 1 -0.3633 0.3866 0.9521 28 1 -0.3633 0.6313 -0.8109 29 1 -0.3634 -1.0179 -0.1412 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 2.0559 -2.8319 1.7452 34 1 0.4644 -2.2812 1.1687 35 1 2.3543 -2.1496 -0.9552 36 1 0.4996 -4.4151 1.1540 37 1 -0.2316 -6.6777 0.4464 38 1 0.3334 -7.4566 -1.8409 39 1 3.2720 -3.4360 -4.6998 40 1 1.4308 0.9069 2.3736 41 1 0.3883 -0.5154 2.5516 42 1 3.1169 0.0017 3.7588 43 1 1.6054 -0.4354 4.5744 44 1 1.9155 -2.6130 3.0212 45 1 2.6028 -2.4726 4.6589 46 1 4.4721 -3.1144 3.3596 47 1 4.6433 -1.3536 3.4687 48 1 3.4272 -2.8751 1.2034 49 1 5.0645 -2.1981 1.2534 50 1 3.8353 -0.5530 0.0777 51 1 3.8570 0.0854 1.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116285405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:18 Heat of formation + Delta-G solvation = 58.308894 kcal Electronic energy + Delta-G solvation = -28706.235498 eV Core-core repulsion = 25219.970087 eV Total energy + Delta-G solvation = -3486.265411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97233 -39.83838 -37.38866 -36.22174 -34.93770 -33.22465 -32.32098 -31.89750 -30.62867 -28.82943 -27.32092 -27.03242 -25.77470 -25.12208 -23.25907 -23.10477 -22.19779 -20.88253 -19.31476 -18.94895 -17.81478 -17.69197 -16.88188 -16.59028 -16.39389 -15.97229 -15.67668 -15.41114 -15.18810 -14.89223 -14.73564 -14.46450 -14.40572 -14.36059 -13.79956 -13.62090 -13.46751 -13.31842 -12.97208 -12.84264 -12.81535 -12.70569 -12.59991 -12.51264 -12.23791 -12.08078 -11.79830 -11.74835 -11.64545 -11.38188 -11.25373 -11.15341 -11.12230 -10.84062 -10.40604 -9.75178 -9.35626 -9.09645 -8.16705 -8.10836 -6.43184 1.11190 1.41587 1.42307 1.57366 1.59824 2.27341 2.72072 2.97877 3.13112 3.59003 3.75426 3.93552 4.06772 4.12456 4.15479 4.27254 4.28780 4.30892 4.41857 4.47315 4.48894 4.55416 4.64614 4.65488 4.69466 4.76895 4.84041 4.90415 4.99517 5.00905 5.04938 5.05208 5.05358 5.08809 5.14956 5.18991 5.22210 5.31421 5.35575 5.35862 5.44827 5.45577 5.55327 5.67918 5.78403 6.01904 6.12888 6.20428 6.23326 6.29417 6.67487 6.92676 7.08248 7.36409 8.43208 8.57869 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.004080 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.253677 B = 6861.267362 C = 7455.325214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.022 3.978 4 C 0.117 3.883 5 C 0.129 3.871 6 N -0.710 5.710 7 C 0.400 3.600 8 C -0.370 4.370 9 C -0.030 4.030 10 C -0.349 4.349 11 C 0.261 3.739 12 C -0.474 4.474 13 H 0.083 0.917 14 C 0.027 3.973 15 N -0.748 5.748 16 Si 0.983 3.017 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.267 1.267 20 N -0.564 5.564 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.110 4.110 25 C -0.139 4.139 26 C -0.093 4.093 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.395 0.605 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.274 0.726 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 12.019 13.597 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.126 4.126 4 C 0.027 3.973 5 C 0.005 3.995 6 N -0.344 5.344 7 C 0.158 3.842 8 C -0.396 4.396 9 C -0.054 4.054 10 C -0.372 4.372 11 C 0.134 3.866 12 C -0.506 4.506 13 H 0.101 0.899 14 C -0.194 4.194 15 N -0.371 5.371 16 Si 0.804 3.196 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.192 1.192 20 N -0.287 5.287 21 C -0.176 4.176 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.148 4.148 25 C -0.177 4.177 26 C -0.131 4.131 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.230 0.770 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.705 12.538 12.738 17.954 hybrid contribution -0.597 -0.425 0.024 0.733 sum 1.109 12.113 12.762 17.630 Atomic orbital electron populations 1.22314 0.87670 1.01330 1.00735 1.62247 1.08105 1.14701 1.42328 1.22458 1.01153 0.88039 1.00945 1.20974 0.95489 0.91725 0.89062 1.22310 0.98350 0.94387 0.84476 1.44170 1.61901 1.13110 1.15241 1.18998 0.88733 0.86553 0.89903 1.20891 1.18466 0.98705 1.01511 1.20958 0.94992 0.94786 0.94650 1.21646 1.15699 1.02223 0.97663 1.18668 0.87600 0.86997 0.93364 1.19924 1.31609 1.02167 0.96874 0.89887 1.26914 0.94107 0.94288 1.04126 1.70277 1.23617 1.06878 1.36295 0.85155 0.78590 0.79545 0.76327 1.17980 1.19260 1.19158 1.68223 1.29714 1.16925 1.13822 1.22522 0.99893 1.01173 0.94002 1.21191 1.00385 0.96018 0.96700 1.21808 0.96936 0.97638 1.01558 1.20439 0.97401 1.02044 0.94899 1.20746 1.01061 0.98444 0.97407 1.21302 0.92877 0.97722 1.01175 0.93823 0.91604 0.93678 0.90953 0.91512 0.94074 0.88836 0.94756 0.76971 0.87035 0.85703 0.88370 0.91533 0.90545 0.92165 0.91181 0.91050 0.91081 0.90745 0.92823 0.91038 0.91707 0.93206 0.92338 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 8.82 127.69 1.13 1.84 16 2 N -0.55 -14.33 3.95 -901.31 -3.56 -17.88 16 3 C 0.02 0.44 8.97 127.69 1.15 1.58 16 4 C 0.12 2.83 0.10 3.07 0.00 2.83 16 5 C 0.13 3.99 1.59 86.38 0.14 4.13 16 6 N -0.71 -29.16 4.40 -344.98 -1.52 -30.67 16 7 C 0.40 20.12 7.65 133.42 1.02 21.14 16 8 C -0.37 -17.24 9.32 22.73 0.21 -17.02 16 9 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 10 C -0.35 -18.57 9.83 22.87 0.22 -18.35 16 11 C 0.26 15.43 6.55 40.18 0.26 15.69 16 12 C -0.47 -27.24 9.14 23.46 0.21 -27.03 16 13 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 14 C 0.03 1.47 5.50 85.29 0.47 1.93 16 15 N -0.75 -41.93 11.46 21.84 0.25 -41.68 16 16 Si 0.98 40.05 29.56 68.60 2.03 42.08 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 N -0.56 -32.78 7.89 -186.59 -1.47 -34.25 16 21 C -0.14 -2.56 3.71 31.31 0.12 -2.44 16 22 C -0.11 -1.68 5.30 30.11 0.16 -1.52 16 23 C -0.14 -2.69 5.57 30.17 0.17 -2.53 16 24 C -0.11 -2.27 5.22 28.74 0.15 -2.12 16 25 C -0.14 -3.59 5.09 28.74 0.15 -3.45 16 26 C -0.09 -2.20 3.34 30.20 0.10 -2.10 16 27 H 0.04 0.94 6.35 -2.39 -0.02 0.92 16 28 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 29 H 0.04 1.43 6.72 -2.39 -0.02 1.41 16 30 H 0.07 1.43 6.57 -2.39 -0.02 1.41 16 31 H 0.07 1.32 8.08 -2.39 -0.02 1.31 16 32 H 0.04 0.69 6.19 -2.38 -0.01 0.68 16 33 H 0.09 2.86 2.65 -2.39 -0.01 2.85 16 34 H 0.03 1.13 6.23 -2.38 -0.01 1.11 16 35 H 0.40 17.38 7.94 -92.70 -0.74 16.65 16 36 H 0.11 4.52 6.67 -2.91 -0.02 4.50 16 37 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.27 13.92 8.29 -92.71 -0.77 13.15 16 40 H 0.08 1.27 5.95 -2.39 -0.01 1.26 16 41 H 0.06 1.19 6.87 -2.38 -0.02 1.17 16 42 H 0.07 1.01 6.62 -2.39 -0.02 0.99 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.63 4.18 -2.39 -0.01 1.62 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.23 7.47 -2.39 -0.02 1.22 16 48 H 0.06 2.12 4.23 -2.39 -0.01 2.11 16 49 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 1.61 7.27 -2.39 -0.02 1.59 16 51 H 0.08 1.56 6.99 -2.38 -0.02 1.54 16 Total: -1.00 -65.78 364.25 1.82 -63.96 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: 0.21 Total: 47.01 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 5.88 Total: -28.57 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.30 Total: -124.49 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -65.78 1.82 -63.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116285405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.271 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds