Wall clock time and date at job start Tue Mar 31 2020 11:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00125 * 2 1 4 4 C 1.46903 * 110.99763 * 123.95389 * 2 1 3 5 5 H 1.09003 * 109.46828 * 31.29137 * 4 2 1 6 6 C 1.52999 * 109.46761 * 151.28829 * 4 2 1 7 7 N 1.46494 * 109.47605 * 305.00256 * 6 4 2 8 8 C 1.38822 * 120.00049 * 180.02562 * 7 6 4 9 9 C 1.39795 * 119.58448 * 359.72377 * 8 7 6 10 10 C 1.38600 * 119.48547 * 179.79377 * 9 8 7 11 11 C 1.38381 * 118.68397 * 0.47632 * 10 9 8 12 12 C 1.40559 * 119.14947 * 359.74554 * 11 10 9 13 13 C 1.41317 * 119.78240 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00078 * 0.02562 * 13 12 11 15 15 C 1.40030 * 119.99640 * 180.02562 * 13 12 11 16 16 N 1.30739 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99673 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47087 * 59.99832 * 17 15 13 19 19 H 1.48503 * 109.46972 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47079 * 299.99936 * 17 15 13 21 21 N 1.31954 * 119.58263 * 179.97438 * 8 7 6 22 22 C 1.53001 * 109.47024 * 271.29096 * 4 2 1 23 23 C 1.53006 * 109.46902 * 180.71623 * 22 4 2 24 24 C 1.52992 * 109.47053 * 179.97438 * 23 22 4 25 25 C 1.53000 * 109.47476 * 60.00119 * 24 23 22 26 26 C 1.53006 * 109.46882 * 299.99985 * 25 24 23 27 27 C 1.52995 * 109.47286 * 60.71898 * 22 4 2 28 28 H 1.09005 * 109.46705 * 47.60652 * 1 2 3 29 29 H 1.09000 * 109.46976 * 287.61086 * 1 2 3 30 30 H 1.08992 * 109.47160 * 167.60961 * 1 2 3 31 31 H 1.08998 * 109.46906 * 57.09509 * 3 2 1 32 32 H 1.09000 * 109.46944 * 177.09183 * 3 2 1 33 33 H 1.08993 * 109.47391 * 297.09555 * 3 2 1 34 34 H 1.09003 * 109.46648 * 65.00495 * 6 4 2 35 35 H 1.09003 * 109.46547 * 184.99695 * 6 4 2 36 36 H 0.97005 * 119.99570 * 359.97438 * 7 6 4 37 37 H 1.07997 * 120.25447 * 359.97438 * 9 8 7 38 38 H 1.08004 * 120.65517 * 180.22501 * 10 9 8 39 39 H 1.08005 * 120.42385 * 179.77384 * 11 10 9 40 40 H 0.97004 * 120.00342 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.47208 * 300.71331 * 22 4 2 42 42 H 1.08997 * 109.46913 * 300.00366 * 23 22 4 43 43 H 1.08998 * 109.47249 * 59.99819 * 23 22 4 44 44 H 1.08997 * 109.47584 * 299.99984 * 24 23 22 45 45 H 1.09004 * 109.46965 * 180.02562 * 24 23 22 46 46 H 1.08994 * 109.47331 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47106 * 59.99365 * 25 24 23 48 48 H 1.08993 * 109.46951 * 299.99861 * 26 25 24 49 49 H 1.09001 * 109.47177 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.47110 * 299.99716 * 27 22 4 51 51 H 1.09005 * 109.47352 * 59.99267 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.3057 -1.5740 1.3819 6 6 3.3593 -1.3535 0.7694 7 7 3.2358 -2.1423 -0.4589 8 6 4.3498 -2.7772 -0.9910 9 6 5.5863 -2.6533 -0.3508 10 6 6.6963 -3.2915 -0.8815 11 6 6.5464 -4.0290 -2.0428 12 6 5.2778 -4.1117 -2.6423 13 6 5.1094 -4.8616 -3.8282 14 1 5.9538 -5.3690 -4.2707 15 6 3.8476 -4.9466 -4.4295 16 7 2.8253 -4.3327 -3.8935 17 14 3.6252 -5.9372 -5.9975 18 1 3.9991 -7.3523 -5.7462 19 1 2.2057 -5.8698 -6.4284 20 1 4.4939 -5.3777 -7.0639 21 7 4.2291 -3.4859 -2.0975 22 6 2.1478 0.1578 2.3477 23 6 2.7129 -0.6360 3.5274 24 6 2.8659 0.2879 4.7372 25 6 1.4994 0.8620 5.1167 26 6 0.9343 1.6558 3.9370 27 6 0.7811 0.7313 2.7269 28 1 -0.3633 0.6929 -0.7590 29 1 -0.3633 0.3109 0.9795 30 1 -0.3633 -1.0036 -0.2205 31 1 1.6045 1.9107 0.8628 32 1 3.0839 1.3428 0.0521 33 1 1.6888 1.8784 -0.9148 34 1 4.0727 -0.5446 0.6116 35 1 3.7095 -1.9940 1.5789 36 1 2.3755 -2.2215 -0.8999 37 1 5.6754 -2.0671 0.5519 38 1 7.6599 -3.2116 -0.4003 39 1 7.3933 -4.5348 -2.4826 40 1 1.9512 -4.3919 -4.3099 41 1 2.8276 0.9728 2.0993 42 1 2.0331 -1.4510 3.7757 43 1 3.6866 -1.0446 3.2573 44 1 3.5459 1.1026 4.4886 45 1 3.2689 -0.2776 5.5775 46 1 1.6085 1.5205 5.9783 47 1 0.8193 0.0472 5.3653 48 1 1.6143 2.4705 3.6883 49 1 -0.0394 2.0644 4.2071 50 1 0.3785 1.2968 1.8865 51 1 0.1012 -0.0838 2.9752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116286637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:11 Heat of formation + Delta-G solvation = 37.177962 kcal Electronic energy + Delta-G solvation = -27507.527380 eV Core-core repulsion = 24020.345663 eV Total energy + Delta-G solvation = -3487.181717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.21172 -38.04682 -36.76904 -34.65495 -33.15079 -31.78782 -30.76668 -30.24767 -29.19467 -27.68843 -27.12147 -25.19943 -23.97332 -22.84385 -22.47895 -21.35380 -20.34798 -19.91085 -19.48963 -17.23762 -16.39857 -16.09614 -15.70047 -15.23442 -14.69537 -14.54441 -14.38211 -14.35907 -13.98788 -13.93780 -13.65607 -13.23116 -13.08177 -12.66763 -12.62278 -12.27879 -12.11681 -11.93787 -11.81381 -11.67854 -11.63478 -11.45574 -11.29246 -11.21122 -11.06964 -10.92050 -10.88588 -10.57295 -10.50046 -10.46223 -10.30683 -10.01869 -9.82104 -9.34965 -8.72217 -8.03928 -7.77625 -7.36365 -6.30080 -6.20331 -4.36247 2.98850 3.16362 3.19285 3.36438 3.41546 3.95851 4.06646 4.26110 4.51797 4.51935 4.65575 4.93300 4.95966 4.97972 5.13885 5.20944 5.25175 5.30330 5.32194 5.36561 5.39116 5.40772 5.56593 5.58617 5.69391 5.72568 5.82727 5.90726 5.91709 5.95591 5.97509 6.00143 6.05091 6.10235 6.13675 6.21802 6.25902 6.27683 6.33934 6.69347 7.00132 7.00905 7.05587 7.16134 7.16656 7.38094 7.73830 7.94934 8.05789 8.30487 8.54033 8.89922 8.94925 9.28888 10.38386 10.53927 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.003129 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.850315 B = 8945.385869 C = 9960.540163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.528 5.528 3 C 0.019 3.981 4 C 0.078 3.922 5 H 0.081 0.919 6 C 0.157 3.843 7 N -0.724 5.724 8 C 0.415 3.585 9 C -0.370 4.370 10 C -0.032 4.032 11 C -0.321 4.321 12 C 0.294 3.706 13 C -0.437 4.437 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.714 5.714 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 N -0.532 5.532 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.269 0.731 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 11.414 14.040 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.251 5.251 3 C -0.129 4.129 4 C -0.032 4.032 5 H 0.099 0.901 6 C 0.030 3.970 7 N -0.360 5.360 8 C 0.174 3.826 9 C -0.396 4.396 10 C -0.057 4.057 11 C -0.344 4.344 12 C 0.167 3.833 13 C -0.469 4.469 14 H 0.099 0.901 15 C -0.153 4.153 16 N -0.335 5.335 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 N -0.254 5.254 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.163 4.163 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.236 0.764 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.760 11.237 13.313 19.071 hybrid contribution 0.195 0.059 0.311 0.372 sum -7.565 11.296 13.623 19.247 Atomic orbital electron populations 1.22765 0.87851 1.02701 1.00707 1.62056 1.07354 1.13718 1.41934 1.22524 1.00847 0.89122 1.00392 1.22041 0.97321 0.95657 0.88131 0.90091 1.21018 0.94632 0.93788 0.87579 1.43943 1.09812 1.55139 1.27141 1.18562 0.85184 0.88913 0.89907 1.20591 0.94069 1.18018 1.06902 1.20569 0.95931 0.94563 0.94606 1.21504 0.98643 1.12538 1.01734 1.18189 0.85898 0.88081 0.91161 1.19516 0.94944 1.26418 1.06059 0.90118 1.26029 0.95927 0.95094 0.98264 1.70155 0.99827 1.29248 1.34291 0.86479 0.77875 0.80808 0.82086 1.19115 1.20426 1.19100 1.68233 1.31755 1.15176 1.10205 1.21794 0.97345 0.98723 0.95171 1.21627 1.01617 0.97912 0.94255 1.21523 0.96942 0.99202 0.97941 1.21535 0.97083 0.99509 0.97533 1.21534 1.00578 0.98114 0.95321 1.22028 0.97041 0.99251 0.97943 0.91835 0.94094 0.91425 0.94875 0.91415 0.91887 0.93652 0.92982 0.76401 0.89495 0.89213 0.88935 0.92004 0.90323 0.91914 0.91127 0.92106 0.92094 0.92396 0.92137 0.92155 0.92330 0.90773 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.08 60.07 0.55 0.63 16 2 N -0.53 -6.86 4.29 -243.17 -1.04 -7.90 16 3 C 0.02 0.22 8.08 60.07 0.49 0.71 16 4 C 0.08 0.98 1.68 -67.71 -0.11 0.86 16 5 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 6 C 0.16 2.51 3.90 -4.05 -0.02 2.49 16 7 N -0.72 -15.15 5.55 -60.40 -0.34 -15.49 16 8 C 0.41 10.52 7.65 -155.33 -1.19 9.33 16 9 C -0.37 -8.86 9.34 -38.87 -0.36 -9.22 16 10 C -0.03 -0.78 10.15 -39.40 -0.40 -1.18 16 11 C -0.32 -8.45 9.83 -38.65 -0.38 -8.83 16 12 C 0.29 8.48 6.55 -85.00 -0.56 7.92 16 13 C -0.44 -12.23 9.14 -37.74 -0.34 -12.58 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.07 1.90 5.50 -17.35 -0.10 1.80 16 16 N -0.71 -19.55 11.46 55.55 0.64 -18.92 16 17 Si 0.90 19.29 29.56 -169.99 -5.02 14.26 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 21 N -0.53 -15.23 7.89 -10.33 -0.08 -15.31 16 22 C -0.11 -1.10 1.20 -90.62 -0.11 -1.21 16 23 C -0.12 -1.13 4.83 -26.73 -0.13 -1.26 16 24 C -0.12 -1.00 5.92 -26.74 -0.16 -1.16 16 25 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 26 C -0.12 -0.92 5.93 -26.70 -0.16 -1.08 16 27 C -0.13 -1.10 3.33 -26.71 -0.09 -1.19 16 28 H 0.06 0.66 8.05 -51.93 -0.42 0.25 16 29 H 0.04 0.39 4.39 -51.93 -0.23 0.16 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.32 4.90 -51.93 -0.25 0.07 16 32 H 0.07 0.85 7.03 -51.93 -0.37 0.48 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.76 7.24 -51.93 -0.38 0.38 16 35 H 0.05 0.83 6.48 -51.93 -0.34 0.49 16 36 H 0.40 8.68 8.26 -40.82 -0.34 8.34 16 37 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 38 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.09 2.27 8.06 -52.48 -0.42 1.84 16 40 H 0.27 6.73 8.29 -40.82 -0.34 6.39 16 41 H 0.08 0.83 6.35 -51.93 -0.33 0.50 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.75 6.53 -51.93 -0.34 0.41 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.66 3.91 -51.93 -0.20 0.46 16 51 H 0.06 0.57 7.99 -51.93 -0.41 0.15 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -30.24 379.24 -11.92 -42.15 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.55 Total: 10.50 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.23 Total: -15.02 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.82 Total: -57.61 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.24 -11.92 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116286637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.329 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds