Wall clock time and date at job start Tue Mar 31 2020 11:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47338 * 270.00230 * 3 2 1 5 5 C 1.52998 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47463 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46850 * 180.02562 * 6 5 4 8 8 C 1.46845 * 111.00565 * 45.79157 * 7 6 5 9 9 C 1.53034 * 109.52676 * 185.84030 * 8 7 6 10 10 C 1.53126 * 109.27454 * 300.81918 * 9 8 7 11 11 C 1.53119 * 109.16048 * 57.65518 * 10 9 8 12 12 C 1.46850 * 110.99813 * 170.00223 * 7 6 5 13 13 C 1.38826 * 119.99508 * 180.02562 * 2 1 3 14 14 C 1.39799 * 119.58080 * 185.00124 * 13 2 1 15 15 C 1.38594 * 119.49387 * 179.97438 * 14 13 2 16 16 C 1.38392 * 118.67912 * 359.97438 * 15 14 13 17 17 C 1.40561 * 119.14745 * 359.97438 * 16 15 14 18 18 C 1.41314 * 119.78231 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00346 * 0.02562 * 18 17 16 20 20 C 1.40027 * 119.99670 * 180.02562 * 18 17 16 21 21 N 1.30738 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47020 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46988 * 120.00203 * 22 20 18 25 25 H 1.48497 * 109.46834 * 240.00297 * 22 20 18 26 26 N 1.31953 * 119.59085 * 4.72122 * 13 2 1 27 27 H 1.08999 * 109.47190 * 90.00016 * 1 2 3 28 28 H 1.09001 * 109.47143 * 209.99784 * 1 2 3 29 29 H 1.09002 * 109.47048 * 330.00052 * 1 2 3 30 30 H 1.08997 * 109.47186 * 149.99941 * 3 2 1 31 31 H 1.09006 * 109.46640 * 30.00165 * 3 2 1 32 32 H 1.09006 * 109.47136 * 59.99942 * 4 3 2 33 33 H 1.08999 * 109.47418 * 299.99924 * 4 3 2 34 34 H 1.09006 * 109.46795 * 59.99992 * 5 4 3 35 35 H 1.08999 * 109.46969 * 300.00458 * 5 4 3 36 36 H 1.08995 * 109.46637 * 60.00012 * 6 5 4 37 37 H 1.09001 * 109.46762 * 299.99969 * 6 5 4 38 38 H 1.08995 * 109.46315 * 65.81881 * 8 7 6 39 39 H 1.09005 * 109.45975 * 305.85394 * 8 7 6 40 40 H 1.08997 * 109.50792 * 180.88024 * 9 8 7 41 41 H 1.09006 * 109.50471 * 60.75677 * 9 8 7 42 42 H 1.08999 * 109.52028 * 177.55723 * 10 9 8 43 43 H 1.08993 * 109.52259 * 297.74866 * 10 9 8 44 44 H 1.09004 * 109.50440 * 62.28501 * 11 10 9 45 45 H 1.09003 * 109.50154 * 182.40625 * 11 10 9 46 46 H 1.09005 * 109.46186 * 54.13967 * 12 7 6 47 47 H 1.08998 * 109.46012 * 294.17361 * 12 7 6 48 48 H 1.08003 * 120.25562 * 359.94988 * 14 13 2 49 49 H 1.08002 * 120.66253 * 180.02562 * 15 14 13 50 50 H 1.08000 * 120.42686 * 179.97438 * 16 15 14 51 51 H 0.97003 * 120.00482 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2170 3.0357 -1.4424 6 6 3.4726 3.4771 -2.8850 7 7 4.2072 4.7492 -2.8848 8 6 5.3210 4.7138 -1.9285 9 6 5.9709 6.0970 -1.8489 10 6 6.4781 6.4978 -3.2370 11 6 5.3077 6.4800 -4.2241 12 6 4.6769 5.0858 -4.2348 13 6 2.1590 -1.2023 -0.0005 14 6 3.5530 -1.1946 0.1055 15 6 4.2440 -2.3960 0.1053 16 6 3.5266 -3.5747 -0.0001 17 6 2.1259 -3.5169 -0.1027 18 6 1.3801 -4.7124 -0.2104 19 1 1.8863 -5.6663 -0.2133 20 6 -0.0154 -4.6600 -0.3133 21 7 -0.6283 -3.5051 -0.3103 22 14 -1.0015 -6.2403 -0.4550 23 1 -0.0783 -7.4033 -0.4344 24 1 -1.9460 -6.3383 0.6866 25 1 -1.7639 -6.2354 -1.7293 26 7 1.4944 -2.3383 -0.0955 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5138 31 1 1.6084 2.0283 0.5139 32 1 1.5001 1.8408 -1.9563 33 1 3.0416 0.9508 -1.9563 34 1 4.1695 2.9057 -0.9285 35 1 2.6276 3.7951 -0.9286 36 1 2.5204 3.6069 -3.3992 37 1 4.0622 2.7175 -3.3983 38 1 6.0599 3.9837 -2.2585 39 1 4.9460 4.4316 -0.9447 40 1 6.8074 6.0665 -1.1507 41 1 5.2360 6.8253 -1.5057 42 1 6.9030 7.5007 -3.1940 43 1 7.2411 5.7916 -3.5640 44 1 4.5624 7.2143 -3.9183 45 1 5.6703 6.7230 -5.2229 46 1 3.8343 5.0736 -4.9262 47 1 5.4189 4.3539 -4.5541 48 1 4.0874 -0.2595 0.1865 49 1 5.3208 -2.4120 0.1866 50 1 4.0364 -4.5268 -0.0035 51 1 -1.5950 -3.4688 -0.3812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119288581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:30 Heat of formation + Delta-G solvation = 31.956093 kcal Electronic energy + Delta-G solvation = -26402.727520 eV Core-core repulsion = 22915.319366 eV Total energy + Delta-G solvation = -3487.408154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.33617 -38.44363 -36.30564 -34.75912 -33.35203 -32.26272 -31.07186 -30.30901 -29.26185 -27.92631 -26.09528 -24.84262 -23.97337 -23.29614 -22.15963 -21.12227 -20.65639 -19.87571 -19.59652 -17.39244 -16.32340 -16.18865 -15.47322 -15.11406 -14.79877 -14.78769 -14.59738 -14.25543 -13.99845 -13.98505 -13.69320 -13.29131 -13.19590 -12.98442 -12.53937 -12.38204 -12.06202 -12.00909 -11.80377 -11.48176 -11.34990 -11.22379 -11.17330 -11.14930 -11.01457 -10.90661 -10.85793 -10.60087 -10.57452 -10.46837 -10.32723 -10.16845 -9.86102 -9.41033 -8.63777 -8.45221 -7.87069 -7.44930 -6.36085 -6.30490 -4.44604 2.87796 3.12548 3.16818 3.26159 3.30838 3.69564 3.99699 4.07021 4.55172 4.59866 4.67139 4.84298 4.90220 5.00763 5.06745 5.21020 5.25213 5.35867 5.38421 5.41233 5.49524 5.60855 5.60945 5.68311 5.76670 5.81022 5.85200 5.85945 5.90123 5.98270 6.01583 6.05040 6.11332 6.13562 6.23243 6.36983 6.50862 6.56407 6.68678 6.79605 6.87688 6.92921 6.94468 6.95728 7.14753 7.24898 7.63248 7.86322 7.98581 8.06095 8.41338 8.58389 8.83435 9.14343 10.26757 10.42496 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002298 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.393565 B =12182.239001 C =12549.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.623 5.623 3 C 0.139 3.861 4 C -0.136 4.136 5 C -0.118 4.118 6 C 0.056 3.944 7 N -0.539 5.539 8 C 0.047 3.953 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.116 4.116 12 C 0.054 3.946 13 C 0.412 3.588 14 C -0.366 4.366 15 C -0.033 4.033 16 C -0.318 4.318 17 C 0.291 3.709 18 C -0.434 4.434 19 H 0.082 0.918 20 C 0.072 3.928 21 N -0.715 5.715 22 Si 0.904 3.096 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 N -0.527 5.527 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 17.440 -4.345 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.340 5.340 3 C 0.014 3.986 4 C -0.176 4.176 5 C -0.156 4.156 6 C -0.071 4.071 7 N -0.264 5.264 8 C -0.081 4.081 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.154 4.154 12 C -0.074 4.074 13 C 0.173 3.827 14 C -0.391 4.391 15 C -0.057 4.057 16 C -0.341 4.341 17 C 0.164 3.836 18 C -0.466 4.466 19 H 0.100 0.900 20 C -0.153 4.153 21 N -0.337 5.337 22 Si 0.728 3.272 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.248 5.248 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.112 0.888 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.290 17.995 -4.260 19.234 hybrid contribution 1.056 -1.320 -0.436 1.746 sum 6.346 16.675 -4.695 18.449 Atomic orbital electron populations 1.21318 0.80047 1.01462 1.00052 1.45974 1.04670 1.02055 1.81284 1.21186 0.97038 0.85152 0.95243 1.22027 1.00384 0.96117 0.99068 1.21676 1.00716 0.97347 0.95843 1.22146 0.98269 0.88920 0.97777 1.62013 1.25132 1.32343 1.06865 1.22231 0.91928 0.96566 0.97373 1.21599 0.99923 0.97145 0.96848 1.21588 0.97639 1.01208 0.95563 1.21578 0.97749 0.97052 0.99023 1.22079 0.98642 0.96353 0.90314 1.18500 0.87314 0.86916 0.89952 1.20630 0.93377 0.96949 1.28180 1.20585 0.96967 0.92771 0.95362 1.21526 0.95663 0.96386 1.20519 1.18231 0.88289 0.90528 0.86559 1.19595 0.91143 0.92762 1.43088 0.89968 1.26029 0.98587 0.97037 0.93618 1.70143 1.09161 1.25013 1.29374 0.86341 0.79872 0.82547 0.78410 1.18524 1.19985 1.20002 1.68239 1.36357 0.95440 1.24731 0.95215 0.89226 0.94608 0.91120 0.92064 0.92077 0.91603 0.91724 0.91241 0.90693 0.94843 0.95058 0.89773 0.91681 0.91157 0.91973 0.92395 0.91135 0.91761 0.90879 0.95050 0.89056 0.89063 0.88833 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.26 10.46 59.85 0.63 2.89 16 2 N -0.62 -12.87 2.98 -181.69 -0.54 -13.41 16 3 C 0.14 2.22 5.29 -4.05 -0.02 2.19 16 4 C -0.14 -1.95 5.54 -26.74 -0.15 -2.10 16 5 C -0.12 -1.34 4.46 -26.73 -0.12 -1.46 16 6 C 0.06 0.63 5.27 -3.82 -0.02 0.61 16 7 N -0.54 -5.64 4.81 -234.67 -1.13 -6.77 16 8 C 0.05 0.45 4.85 -3.84 -0.02 0.44 16 9 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 10 C -0.12 -0.93 6.00 -26.60 -0.16 -1.09 16 11 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 12 C 0.05 0.50 5.42 -3.83 -0.02 0.48 16 13 C 0.41 10.16 7.37 -155.32 -1.14 9.02 16 14 C -0.37 -8.49 9.29 -38.87 -0.36 -8.85 16 15 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 16 C -0.32 -8.14 9.83 -38.65 -0.38 -8.52 16 17 C 0.29 8.15 6.55 -85.00 -0.56 7.59 16 18 C -0.43 -11.79 9.14 -37.74 -0.34 -12.13 16 19 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 20 C 0.07 1.84 5.50 -17.35 -0.10 1.75 16 21 N -0.72 -18.73 11.46 55.55 0.64 -18.09 16 22 Si 0.90 18.76 29.56 -169.99 -5.02 13.74 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 N -0.53 -14.54 6.64 -10.33 -0.07 -14.61 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 2.04 7.44 -51.93 -0.39 1.65 16 29 H 0.04 0.58 7.89 -51.93 -0.41 0.17 16 30 H 0.07 1.14 5.96 -51.93 -0.31 0.83 16 31 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.73 6.21 -51.93 -0.32 0.40 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 1.88 6.01 -52.48 -0.32 1.57 16 49 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 50 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 51 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -29.29 395.58 -12.84 -42.13 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -9.18 Total: 3.60 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.49 Total: -12.55 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.10 Total: -52.88 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.29 -12.84 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119288581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.082 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds