Wall clock time and date at job start Tue Mar 31 2020 11:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00276 * 2 1 4 4 C 1.52994 * 109.47338 * 270.00230 * 3 2 1 5 5 C 1.52998 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47463 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46850 * 180.02562 * 6 5 4 8 8 C 1.46845 * 111.00565 * 45.79157 * 7 6 5 9 9 C 1.53034 * 109.52676 * 185.84030 * 8 7 6 10 10 C 1.53126 * 109.27454 * 300.81918 * 9 8 7 11 11 C 1.53119 * 109.16048 * 57.65518 * 10 9 8 12 12 C 1.46850 * 110.99813 * 170.00223 * 7 6 5 13 13 C 1.38826 * 119.99508 * 180.02562 * 2 1 3 14 14 C 1.39799 * 119.58080 * 185.00124 * 13 2 1 15 15 C 1.38594 * 119.49387 * 179.97438 * 14 13 2 16 16 C 1.38392 * 118.67912 * 359.97438 * 15 14 13 17 17 C 1.40561 * 119.14745 * 359.97438 * 16 15 14 18 18 C 1.41314 * 119.78231 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00346 * 0.02562 * 18 17 16 20 20 C 1.40027 * 119.99670 * 180.02562 * 18 17 16 21 21 N 1.30738 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47020 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46988 * 120.00203 * 22 20 18 25 25 H 1.48497 * 109.46834 * 240.00297 * 22 20 18 26 26 N 1.31953 * 119.59085 * 4.72122 * 13 2 1 27 27 H 1.08999 * 109.47190 * 90.00016 * 1 2 3 28 28 H 1.09001 * 109.47143 * 209.99784 * 1 2 3 29 29 H 1.09002 * 109.47048 * 330.00052 * 1 2 3 30 30 H 1.08997 * 109.47186 * 149.99941 * 3 2 1 31 31 H 1.09006 * 109.46640 * 30.00165 * 3 2 1 32 32 H 1.09006 * 109.47136 * 59.99942 * 4 3 2 33 33 H 1.08999 * 109.47418 * 299.99924 * 4 3 2 34 34 H 1.09006 * 109.46795 * 59.99992 * 5 4 3 35 35 H 1.08999 * 109.46969 * 300.00458 * 5 4 3 36 36 H 1.08995 * 109.46637 * 60.00012 * 6 5 4 37 37 H 1.09001 * 109.46762 * 299.99969 * 6 5 4 38 38 H 1.08995 * 109.46315 * 65.81881 * 8 7 6 39 39 H 1.09005 * 109.45975 * 305.85394 * 8 7 6 40 40 H 1.08997 * 109.50792 * 180.88024 * 9 8 7 41 41 H 1.09006 * 109.50471 * 60.75677 * 9 8 7 42 42 H 1.08999 * 109.52028 * 177.55723 * 10 9 8 43 43 H 1.08993 * 109.52259 * 297.74866 * 10 9 8 44 44 H 1.09004 * 109.50440 * 62.28501 * 11 10 9 45 45 H 1.09003 * 109.50154 * 182.40625 * 11 10 9 46 46 H 1.09005 * 109.46186 * 54.13967 * 12 7 6 47 47 H 1.08998 * 109.46012 * 294.17361 * 12 7 6 48 48 H 1.08003 * 120.25562 * 359.94988 * 14 13 2 49 49 H 1.08002 * 120.66253 * 180.02562 * 15 14 13 50 50 H 1.08000 * 120.42686 * 179.97438 * 16 15 14 51 51 H 0.97003 * 120.00482 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2170 3.0357 -1.4424 6 6 3.4726 3.4771 -2.8850 7 7 4.2072 4.7492 -2.8848 8 6 5.3210 4.7138 -1.9285 9 6 5.9709 6.0970 -1.8489 10 6 6.4781 6.4978 -3.2370 11 6 5.3077 6.4800 -4.2241 12 6 4.6769 5.0858 -4.2348 13 6 2.1590 -1.2023 -0.0005 14 6 3.5530 -1.1946 0.1055 15 6 4.2440 -2.3960 0.1053 16 6 3.5266 -3.5747 -0.0001 17 6 2.1259 -3.5169 -0.1027 18 6 1.3801 -4.7124 -0.2104 19 1 1.8863 -5.6663 -0.2133 20 6 -0.0154 -4.6600 -0.3133 21 7 -0.6283 -3.5051 -0.3103 22 14 -1.0015 -6.2403 -0.4550 23 1 -0.0783 -7.4033 -0.4344 24 1 -1.9460 -6.3383 0.6866 25 1 -1.7639 -6.2354 -1.7293 26 7 1.4944 -2.3383 -0.0955 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5138 31 1 1.6084 2.0283 0.5139 32 1 1.5001 1.8408 -1.9563 33 1 3.0416 0.9508 -1.9563 34 1 4.1695 2.9057 -0.9285 35 1 2.6276 3.7951 -0.9286 36 1 2.5204 3.6069 -3.3992 37 1 4.0622 2.7175 -3.3983 38 1 6.0599 3.9837 -2.2585 39 1 4.9460 4.4316 -0.9447 40 1 6.8074 6.0665 -1.1507 41 1 5.2360 6.8253 -1.5057 42 1 6.9030 7.5007 -3.1940 43 1 7.2411 5.7916 -3.5640 44 1 4.5624 7.2143 -3.9183 45 1 5.6703 6.7230 -5.2229 46 1 3.8343 5.0736 -4.9262 47 1 5.4189 4.3539 -4.5541 48 1 4.0874 -0.2595 0.1865 49 1 5.3208 -2.4120 0.1866 50 1 4.0364 -4.5268 -0.0035 51 1 -1.5950 -3.4688 -0.3812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119288581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:28 Heat of formation + Delta-G solvation = 17.968968 kcal Electronic energy + Delta-G solvation = -26403.334048 eV Core-core repulsion = 22915.319366 eV Total energy + Delta-G solvation = -3488.014682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.33795 -40.01758 -37.79236 -35.86546 -35.18123 -33.36702 -32.18586 -31.75463 -31.07121 -29.18383 -27.76131 -26.24328 -25.23581 -24.10543 -23.35841 -22.97496 -21.59496 -21.30553 -20.57071 -19.28391 -17.86071 -17.10519 -16.73231 -16.55040 -16.27169 -16.07710 -15.80193 -15.45622 -15.31842 -15.09996 -14.94721 -14.50233 -14.35934 -14.18119 -13.89620 -13.70672 -13.50446 -13.25429 -13.03228 -12.85978 -12.81790 -12.62611 -12.59684 -12.43360 -12.23065 -12.12931 -12.09681 -11.96610 -11.69100 -11.59966 -11.46056 -11.27169 -11.24005 -11.05098 -10.44427 -9.79883 -9.38432 -9.28176 -8.21232 -8.12686 -6.45327 1.06299 1.35644 1.41694 1.56132 1.57122 2.25513 2.45797 2.92453 2.95127 3.81508 3.90861 3.93090 4.02861 4.04831 4.10319 4.24485 4.27901 4.31879 4.43258 4.46890 4.53523 4.57030 4.62954 4.65665 4.66897 4.71776 4.79497 4.84311 4.89803 4.92179 4.95896 4.98301 5.01404 5.05572 5.08944 5.10765 5.15044 5.23369 5.28967 5.30812 5.36430 5.37969 5.43117 5.48793 5.75463 5.98631 6.12044 6.13253 6.17773 6.18219 6.63226 6.70603 6.92255 7.21928 8.36004 8.52710 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.002298 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.393565 B =12182.239001 C =12549.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.624 5.624 3 C 0.135 3.865 4 C -0.123 4.123 5 C -0.104 4.104 6 C 0.059 3.941 7 N -0.542 5.542 8 C 0.044 3.956 9 C -0.115 4.115 10 C -0.122 4.122 11 C -0.113 4.113 12 C 0.050 3.950 13 C 0.393 3.607 14 C -0.364 4.364 15 C -0.032 4.032 16 C -0.346 4.346 17 C 0.256 3.744 18 C -0.470 4.470 19 H 0.083 0.917 20 C 0.027 3.973 21 N -0.745 5.745 22 Si 0.984 3.016 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.268 1.268 26 N -0.556 5.556 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.120 0.880 49 H 0.127 0.873 50 H 0.099 0.901 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 19.200 -4.198 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.341 5.341 3 C 0.012 3.988 4 C -0.163 4.163 5 C -0.142 4.142 6 C -0.069 4.069 7 N -0.267 5.267 8 C -0.084 4.084 9 C -0.153 4.153 10 C -0.160 4.160 11 C -0.151 4.151 12 C -0.077 4.077 13 C 0.153 3.847 14 C -0.390 4.390 15 C -0.056 4.056 16 C -0.370 4.370 17 C 0.129 3.871 18 C -0.502 4.502 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.367 5.367 22 Si 0.805 3.195 23 H -0.182 1.182 24 H -0.191 1.191 25 H -0.193 1.193 26 N -0.278 5.278 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.137 0.863 49 H 0.145 0.855 50 H 0.117 0.883 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.656 19.808 -4.113 21.006 hybrid contribution 1.005 -1.727 -0.483 2.055 sum 6.661 18.081 -4.596 19.810 Atomic orbital electron populations 1.21238 0.79778 1.01688 0.99596 1.46267 1.05170 1.02296 1.80336 1.21472 0.97185 0.83714 0.96469 1.21857 1.00086 0.96791 0.97562 1.21544 1.00629 0.95823 0.96192 1.22072 0.98227 0.89134 0.97447 1.62059 1.25562 1.31466 1.07618 1.22294 0.91565 0.97417 0.97098 1.21594 1.00144 0.96009 0.97527 1.21601 0.97427 1.01900 0.95065 1.21568 0.97729 0.95822 0.99937 1.22157 0.98637 0.97165 0.89781 1.18981 0.88472 0.87599 0.89645 1.20969 0.93099 0.98132 1.26764 1.20989 0.98767 0.92046 0.93772 1.21674 0.95255 0.97683 1.22340 1.18714 0.89684 0.91287 0.87408 1.19909 0.92544 0.92815 1.44924 0.89886 1.26902 0.99037 1.00778 0.92789 1.70237 1.09791 1.27169 1.29469 0.85139 0.77971 0.77775 0.78633 1.18165 1.19135 1.19269 1.68217 1.37429 0.96187 1.25963 0.96007 0.92682 0.90570 0.90947 0.89079 0.92486 0.94393 0.91212 0.89975 0.90778 0.96170 0.95969 0.89656 0.90603 0.91270 0.90638 0.92665 0.91296 0.90476 0.90756 0.95751 0.86268 0.85540 0.88265 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.71 10.46 127.77 1.34 6.05 16 2 N -0.62 -25.42 2.98 -728.75 -2.17 -27.60 16 3 C 0.13 4.02 5.29 86.38 0.46 4.48 16 4 C -0.12 -3.37 5.54 30.59 0.17 -3.20 16 5 C -0.10 -2.17 4.46 30.59 0.14 -2.03 16 6 C 0.06 1.26 5.27 86.30 0.46 1.71 16 7 N -0.54 -10.58 4.81 -896.37 -4.31 -14.89 16 8 C 0.04 0.78 4.85 86.33 0.42 1.20 16 9 C -0.11 -1.65 6.09 30.65 0.19 -1.46 16 10 C -0.12 -1.61 6.00 30.68 0.18 -1.42 16 11 C -0.11 -1.57 6.09 30.65 0.19 -1.38 16 12 C 0.05 0.88 5.42 86.32 0.47 1.35 16 13 C 0.39 19.55 7.37 133.42 0.98 20.53 16 14 C -0.36 -16.66 9.29 22.73 0.21 -16.45 16 15 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 16 C -0.35 -18.15 9.83 22.87 0.22 -17.93 16 17 C 0.26 14.88 6.55 40.18 0.26 15.15 16 18 C -0.47 -26.50 9.14 23.46 0.21 -26.29 16 19 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 20 C 0.03 1.41 5.50 85.29 0.47 1.88 16 21 N -0.74 -40.16 11.46 21.84 0.25 -39.91 16 22 Si 0.98 39.15 29.56 68.60 2.03 41.18 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 26 N -0.56 -31.66 6.64 -186.58 -1.24 -32.89 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 2.56 7.44 -2.39 -0.02 2.54 16 29 H 0.08 2.32 7.89 -2.39 -0.02 2.30 16 30 H 0.07 2.15 5.96 -2.39 -0.01 2.14 16 31 H 0.09 2.22 7.89 -2.38 -0.02 2.20 16 32 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.41 6.21 -2.38 -0.01 1.40 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.02 0.48 8.08 -2.39 -0.02 0.46 16 38 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 1.47 5.81 -2.38 -0.01 1.46 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 1.26 8.12 -2.38 -0.02 1.24 16 47 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.12 4.68 6.01 -2.91 -0.02 4.66 16 49 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 50 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 51 H 0.28 13.39 8.29 -92.71 -0.77 12.62 16 Total: -1.00 -65.52 395.58 2.02 -63.49 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.87 Total: 29.67 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 6.59 Total: -19.04 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -7.47 Total: -115.30 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -65.52 2.02 -63.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119288581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.460 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds