Wall clock time and date at job start Tue Mar 31 2020 11:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.46916 * 2 1 4 4 C 1.46903 * 110.99976 * 65.17395 * 3 2 1 5 5 C 1.50700 * 109.47213 * 70.59087 * 4 3 2 6 6 H 1.08000 * 119.99855 * 1.00046 * 5 4 3 7 7 C 1.37875 * 119.99966 * 181.00567 * 5 4 3 8 8 N 1.31514 * 120.00044 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00196 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46844 * 59.99610 * 9 7 5 11 11 H 1.48494 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47062 * 300.00141 * 9 7 5 13 13 C 1.46893 * 111.00297 * 301.21844 * 3 2 1 14 14 C 1.50702 * 109.47064 * 287.72331 * 13 3 2 15 15 C 1.38128 * 120.03814 * 344.35611 * 14 13 3 16 16 C 1.38265 * 120.07501 * 180.27258 * 15 14 13 17 17 C 1.38310 * 120.14584 * 359.75494 * 16 15 14 18 18 C 1.38076 * 120.07832 * 359.96989 * 17 16 15 19 19 C 1.38885 * 120.03616 * 164.10436 * 14 13 3 20 20 N 1.39670 * 120.08054 * 0.02562 * 19 14 13 21 21 C 1.46955 * 111.00019 * 68.38963 * 20 19 14 22 22 C 1.53052 * 109.36451 * 183.19256 * 21 20 19 23 23 N 1.46960 * 109.36540 * 301.59995 * 22 21 20 24 24 C 1.46900 * 110.99867 * 183.18690 * 23 22 21 25 25 C 1.46953 * 110.87625 * 59.32271 * 23 22 21 26 26 C 1.46948 * 111.00598 * 192.19517 * 20 19 14 27 27 H 1.09003 * 109.47350 * 65.55797 * 1 2 3 28 28 H 1.09006 * 109.47206 * 185.55825 * 1 2 3 29 29 H 1.08999 * 109.47571 * 305.55580 * 1 2 3 30 30 H 1.09002 * 109.47130 * 240.00426 * 2 1 3 31 31 H 1.08997 * 109.47598 * 119.99885 * 2 1 3 32 32 H 1.08997 * 109.47418 * 190.59214 * 4 3 2 33 33 H 1.09002 * 109.46832 * 310.59303 * 4 3 2 34 34 H 0.97000 * 119.99871 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47420 * 167.71838 * 13 3 2 36 36 H 1.09002 * 109.46889 * 47.72268 * 13 3 2 37 37 H 1.08003 * 119.96167 * 0.02562 * 15 14 13 38 38 H 1.07994 * 119.92746 * 179.76870 * 16 15 14 39 39 H 1.08005 * 119.95872 * 179.97438 * 17 16 15 40 40 H 1.07996 * 120.03666 * 180.02562 * 18 17 16 41 41 H 1.09002 * 109.48804 * 63.23031 * 21 20 19 42 42 H 1.09002 * 109.50806 * 303.17404 * 21 20 19 43 43 H 1.08996 * 109.49052 * 181.63008 * 22 21 20 44 44 H 1.09003 * 109.49009 * 61.57104 * 22 21 20 45 45 H 1.08994 * 109.47037 * 60.00302 * 24 23 22 46 46 H 1.09000 * 109.47069 * 300.00070 * 24 23 22 47 47 H 1.09006 * 109.46885 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.49203 * 60.64778 * 25 23 22 49 49 H 1.09008 * 109.48871 * 180.71268 * 25 23 22 50 50 H 1.09003 * 109.48819 * 296.77900 * 26 20 19 51 51 H 1.09004 * 109.49339 * 56.82012 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6521 2.0733 1.2447 5 6 2.4593 1.5114 2.3866 6 1 3.1853 0.7332 2.2031 7 6 2.2708 1.9907 3.6655 8 7 1.3869 2.9387 3.8889 9 14 3.2707 1.2937 5.0811 10 1 4.7161 1.5174 4.8234 11 1 2.8824 1.9731 6.3431 12 1 3.0092 -0.1631 5.2018 13 6 1.5249 2.1183 -1.1728 14 6 2.2367 1.6294 -2.4079 15 6 3.3953 0.8867 -2.2898 16 6 4.0520 0.4425 -3.4226 17 6 3.5488 0.7357 -4.6771 18 6 2.3880 1.4729 -4.8022 19 6 1.7255 1.9207 -3.6660 20 7 0.5516 2.6674 -3.7890 21 6 0.7646 4.0575 -3.3624 22 6 -0.5605 4.8198 -3.4366 23 7 -1.0767 4.7670 -4.8115 24 6 -2.3114 5.5524 -4.9407 25 6 -1.2897 3.3770 -5.2379 26 6 0.0354 2.6147 -5.1638 27 1 -0.3634 0.4252 -0.9356 28 1 -0.3634 -1.0229 0.0995 29 1 -0.3634 0.5976 0.8360 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8572 3.1391 1.1448 33 1 0.5905 1.9245 1.4424 34 1 1.2546 3.2761 4.7886 35 1 1.7146 3.1837 -1.0418 36 1 0.4533 1.9507 -1.2806 37 1 3.7908 0.6560 -1.3117 38 1 4.9597 -0.1349 -3.3276 39 1 4.0645 0.3876 -5.5599 40 1 1.9955 1.7011 -5.7821 41 1 1.4941 4.5316 -4.0190 42 1 1.1351 4.0710 -2.3374 43 1 -0.3991 5.8585 -3.1483 44 1 -1.2818 4.3621 -2.7595 45 1 -2.1094 6.5920 -4.6829 46 1 -3.0691 5.1517 -4.2673 47 1 -2.6722 5.4959 -5.9678 48 1 -2.0192 2.9028 -4.5814 49 1 -1.6600 3.3637 -6.2631 50 1 0.7566 3.0724 -5.8409 51 1 -0.1257 1.5759 -5.4522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140972809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:17 Heat of formation + Delta-G solvation = 59.689967 kcal Electronic energy + Delta-G solvation = -27893.546730 eV Core-core repulsion = 24407.341207 eV Total energy + Delta-G solvation = -3486.205523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48890 -38.46068 -36.93149 -35.33166 -32.74634 -31.79430 -30.78319 -30.14817 -29.30200 -27.69393 -26.69121 -25.06271 -24.18379 -23.54844 -22.97168 -21.64588 -20.82179 -19.83004 -19.14993 -17.17860 -16.19527 -15.76745 -15.64501 -15.31835 -15.19217 -15.06578 -14.79212 -14.61139 -14.39706 -14.11965 -13.68008 -13.53920 -13.26588 -12.79517 -12.66664 -12.60531 -12.28600 -12.12995 -11.87210 -11.74890 -11.52613 -11.43975 -11.24295 -11.18226 -11.00942 -10.94855 -10.84060 -10.62163 -10.55584 -10.41641 -10.02135 -9.71174 -9.38746 -9.17217 -8.56795 -8.41616 -8.35278 -7.70121 -7.14793 -5.99433 -4.00007 1.61166 1.70848 3.35254 3.39269 3.42259 3.67544 3.74573 4.09682 4.44762 4.67047 4.81536 4.92477 4.94730 5.07575 5.13434 5.19814 5.27167 5.32743 5.34325 5.36458 5.39159 5.42831 5.58605 5.63024 5.66928 5.72211 5.75017 5.80204 5.85612 5.94492 5.96529 6.01351 6.15289 6.26010 6.28505 6.38278 6.47423 6.56513 6.69185 6.72956 6.77975 6.80931 6.92571 6.97023 7.00140 7.19428 7.35493 7.47453 7.52040 7.85322 8.14697 8.25625 8.59601 9.07401 9.63774 11.11112 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003784 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.418480 B = 7397.706346 C = 8779.002887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 N -0.533 5.533 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.091 3.909 14 C -0.074 4.074 15 C -0.075 4.075 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.173 4.173 19 C 0.098 3.902 20 N -0.489 5.489 21 C 0.054 3.946 22 C 0.055 3.945 23 N -0.546 5.546 24 C 0.025 3.975 25 C 0.056 3.944 26 C 0.056 3.944 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.001 0.999 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 0.528 -19.913 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.257 5.257 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.037 4.037 14 C -0.077 4.077 15 C -0.093 4.093 16 C -0.165 4.165 17 C -0.130 4.130 18 C -0.194 4.194 19 C 0.001 3.999 20 N -0.206 5.206 21 C -0.072 4.072 22 C -0.073 4.073 23 N -0.271 5.271 24 C -0.123 4.123 25 C -0.073 4.073 26 C -0.071 4.071 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.018 0.982 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.069 0.931 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.348 0.697 -19.772 20.065 hybrid contribution -0.548 -0.350 0.856 1.075 sum -3.896 0.347 -18.916 19.316 Atomic orbital electron populations 1.22376 0.99568 1.01126 1.01647 1.21998 0.92063 0.91541 1.01315 1.62272 1.58592 1.01837 1.02958 1.19769 0.95080 0.93820 0.84789 1.21116 1.21048 1.20680 0.91299 0.91995 1.24964 0.95554 0.95243 0.98813 1.69946 1.34521 1.28080 1.21438 0.86599 0.80579 0.79065 0.81376 1.20222 1.21464 1.20341 1.21014 0.96758 0.97434 0.88530 1.19773 0.96132 0.98906 0.92855 1.21248 0.93690 0.94976 0.99428 1.21148 1.00571 1.02114 0.92629 1.20879 0.96003 0.98888 0.97274 1.21217 0.96920 1.03760 0.97475 1.18679 0.89582 0.98403 0.93223 1.59277 1.26657 1.11495 1.23132 1.22389 0.96665 0.85683 1.02430 1.22218 0.96084 1.00426 0.88576 1.62196 1.29548 1.11701 1.23656 1.22341 0.90320 0.98294 1.01346 1.22191 0.96635 0.87853 1.00589 1.22271 0.95791 1.00352 0.88718 0.93385 0.93548 0.91647 0.92721 0.90308 0.95703 0.98173 0.92982 0.90788 0.92957 0.83831 0.86620 0.86890 0.86370 0.93341 0.88624 0.89855 0.93531 0.91256 0.95476 0.91474 0.93827 0.90229 0.93113 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.23 37.15 0.34 -3.12 16 2 C 0.06 1.15 5.39 -3.83 -0.02 1.13 16 3 N -0.53 -11.14 3.42 -237.52 -0.81 -11.96 16 4 C 0.19 4.82 4.61 -4.97 -0.02 4.80 16 5 C -0.50 -13.87 8.48 -34.44 -0.29 -14.16 16 6 H 0.06 1.69 7.48 -52.49 -0.39 1.30 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.09 1.65 3.70 -4.98 -0.02 1.63 16 14 C -0.07 -1.21 5.28 -104.42 -0.55 -1.76 16 15 C -0.07 -1.20 8.02 -39.61 -0.32 -1.52 16 16 C -0.15 -2.00 10.04 -39.54 -0.40 -2.40 16 17 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 18 C -0.17 -2.25 8.86 -39.38 -0.35 -2.60 16 19 C 0.10 1.42 5.36 -83.79 -0.45 0.97 16 20 N -0.49 -6.51 4.20 -170.96 -0.72 -7.23 16 21 C 0.05 0.69 5.28 -3.77 -0.02 0.67 16 22 C 0.06 0.63 5.62 -3.76 -0.02 0.61 16 23 N -0.55 -5.77 4.97 -242.75 -1.21 -6.98 16 24 C 0.03 0.21 9.60 60.06 0.58 0.79 16 25 C 0.06 0.56 5.62 -3.77 -0.02 0.54 16 26 C 0.06 0.62 4.34 -3.77 -0.02 0.60 16 27 H 0.05 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.36 6.10 -51.93 -0.32 1.04 16 30 H 0.05 0.98 6.50 -51.93 -0.34 0.64 16 31 H 0.08 1.65 7.09 -51.93 -0.37 1.28 16 32 H 0.02 0.68 7.75 -51.93 -0.40 0.28 16 33 H 0.00 0.02 5.93 -51.93 -0.31 -0.29 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.07 1.38 5.83 -51.93 -0.30 1.08 16 36 H 0.05 0.98 5.60 -51.93 -0.29 0.69 16 37 H 0.14 2.51 6.77 -52.48 -0.36 2.15 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.15 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.31 5.90 -52.49 -0.31 1.00 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 1.35 4.94 -51.93 -0.26 1.10 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.65 8.13 -51.92 -0.42 0.23 16 50 H 0.05 0.55 7.01 -51.93 -0.36 0.19 16 51 H 0.08 0.86 7.78 -51.93 -0.40 0.45 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -29.31 380.49 -11.89 -41.20 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.53 Total: 2.60 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.07 Total: -14.17 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -2.00 Total: -51.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.31 -11.89 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140972809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.887 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds