Wall clock time and date at job start Tue Mar 31 2020 11:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.46916 * 2 1 4 4 C 1.46903 * 110.99976 * 65.17395 * 3 2 1 5 5 C 1.50700 * 109.47213 * 70.59087 * 4 3 2 6 6 H 1.08000 * 119.99855 * 1.00046 * 5 4 3 7 7 C 1.37875 * 119.99966 * 181.00567 * 5 4 3 8 8 N 1.31514 * 120.00044 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00196 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46844 * 59.99610 * 9 7 5 11 11 H 1.48494 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47062 * 300.00141 * 9 7 5 13 13 C 1.46893 * 111.00297 * 301.21844 * 3 2 1 14 14 C 1.50702 * 109.47064 * 287.72331 * 13 3 2 15 15 C 1.38128 * 120.03814 * 344.35611 * 14 13 3 16 16 C 1.38265 * 120.07501 * 180.27258 * 15 14 13 17 17 C 1.38310 * 120.14584 * 359.75494 * 16 15 14 18 18 C 1.38076 * 120.07832 * 359.96989 * 17 16 15 19 19 C 1.38885 * 120.03616 * 164.10436 * 14 13 3 20 20 N 1.39670 * 120.08054 * 0.02562 * 19 14 13 21 21 C 1.46955 * 111.00019 * 68.38963 * 20 19 14 22 22 C 1.53052 * 109.36451 * 183.19256 * 21 20 19 23 23 N 1.46960 * 109.36540 * 301.59995 * 22 21 20 24 24 C 1.46900 * 110.99867 * 183.18690 * 23 22 21 25 25 C 1.46953 * 110.87625 * 59.32271 * 23 22 21 26 26 C 1.46948 * 111.00598 * 192.19517 * 20 19 14 27 27 H 1.09003 * 109.47350 * 65.55797 * 1 2 3 28 28 H 1.09006 * 109.47206 * 185.55825 * 1 2 3 29 29 H 1.08999 * 109.47571 * 305.55580 * 1 2 3 30 30 H 1.09002 * 109.47130 * 240.00426 * 2 1 3 31 31 H 1.08997 * 109.47598 * 119.99885 * 2 1 3 32 32 H 1.08997 * 109.47418 * 190.59214 * 4 3 2 33 33 H 1.09002 * 109.46832 * 310.59303 * 4 3 2 34 34 H 0.97000 * 119.99871 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47420 * 167.71838 * 13 3 2 36 36 H 1.09002 * 109.46889 * 47.72268 * 13 3 2 37 37 H 1.08003 * 119.96167 * 0.02562 * 15 14 13 38 38 H 1.07994 * 119.92746 * 179.76870 * 16 15 14 39 39 H 1.08005 * 119.95872 * 179.97438 * 17 16 15 40 40 H 1.07996 * 120.03666 * 180.02562 * 18 17 16 41 41 H 1.09002 * 109.48804 * 63.23031 * 21 20 19 42 42 H 1.09002 * 109.50806 * 303.17404 * 21 20 19 43 43 H 1.08996 * 109.49052 * 181.63008 * 22 21 20 44 44 H 1.09003 * 109.49009 * 61.57104 * 22 21 20 45 45 H 1.08994 * 109.47037 * 60.00302 * 24 23 22 46 46 H 1.09000 * 109.47069 * 300.00070 * 24 23 22 47 47 H 1.09006 * 109.46885 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.49203 * 60.64778 * 25 23 22 49 49 H 1.09008 * 109.48871 * 180.71268 * 25 23 22 50 50 H 1.09003 * 109.48819 * 296.77900 * 26 20 19 51 51 H 1.09004 * 109.49339 * 56.82012 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6521 2.0733 1.2447 5 6 2.4593 1.5114 2.3866 6 1 3.1853 0.7332 2.2031 7 6 2.2708 1.9907 3.6655 8 7 1.3869 2.9387 3.8889 9 14 3.2707 1.2937 5.0811 10 1 4.7161 1.5174 4.8234 11 1 2.8824 1.9731 6.3431 12 1 3.0092 -0.1631 5.2018 13 6 1.5249 2.1183 -1.1728 14 6 2.2367 1.6294 -2.4079 15 6 3.3953 0.8867 -2.2898 16 6 4.0520 0.4425 -3.4226 17 6 3.5488 0.7357 -4.6771 18 6 2.3880 1.4729 -4.8022 19 6 1.7255 1.9207 -3.6660 20 7 0.5516 2.6674 -3.7890 21 6 0.7646 4.0575 -3.3624 22 6 -0.5605 4.8198 -3.4366 23 7 -1.0767 4.7670 -4.8115 24 6 -2.3114 5.5524 -4.9407 25 6 -1.2897 3.3770 -5.2379 26 6 0.0354 2.6147 -5.1638 27 1 -0.3634 0.4252 -0.9356 28 1 -0.3634 -1.0229 0.0995 29 1 -0.3634 0.5976 0.8360 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8572 3.1391 1.1448 33 1 0.5905 1.9245 1.4424 34 1 1.2546 3.2761 4.7886 35 1 1.7146 3.1837 -1.0418 36 1 0.4533 1.9507 -1.2806 37 1 3.7908 0.6560 -1.3117 38 1 4.9597 -0.1349 -3.3276 39 1 4.0645 0.3876 -5.5599 40 1 1.9955 1.7011 -5.7821 41 1 1.4941 4.5316 -4.0190 42 1 1.1351 4.0710 -2.3374 43 1 -0.3991 5.8585 -3.1483 44 1 -1.2818 4.3621 -2.7595 45 1 -2.1094 6.5920 -4.6829 46 1 -3.0691 5.1517 -4.2673 47 1 -2.6722 5.4959 -5.9678 48 1 -2.0192 2.9028 -4.5814 49 1 -1.6600 3.3637 -6.2631 50 1 0.7566 3.0724 -5.8409 51 1 -0.1257 1.5759 -5.4522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140972809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:16 Heat of formation + Delta-G solvation = 41.957500 kcal Electronic energy + Delta-G solvation = -27894.315667 eV Core-core repulsion = 24407.341207 eV Total energy + Delta-G solvation = -3486.974461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55482 -39.56974 -38.43738 -36.28276 -34.80504 -33.03978 -31.82614 -31.12392 -31.01846 -29.04662 -28.07726 -26.49459 -25.14883 -24.86471 -24.52962 -22.73317 -22.08870 -20.95451 -20.55830 -18.41337 -18.12278 -17.05074 -16.89615 -16.64288 -16.30724 -16.19764 -15.97415 -15.74568 -15.64447 -15.54904 -14.81415 -14.76439 -14.58157 -14.34502 -13.93913 -13.86221 -13.46561 -13.29696 -13.15747 -13.10545 -12.75528 -12.73185 -12.67901 -12.53173 -12.47496 -12.40213 -12.20190 -12.01285 -11.92261 -11.79392 -11.60297 -11.47771 -11.23728 -10.56909 -10.38711 -9.53756 -9.40851 -8.90998 -8.77312 -8.16443 -6.25648 0.51062 0.58789 1.41691 1.44605 1.52239 2.42058 2.68753 2.91095 3.01151 3.15664 3.34079 3.78020 3.94902 4.00493 4.08803 4.17541 4.21367 4.24154 4.30687 4.34504 4.37059 4.43823 4.51133 4.58653 4.61021 4.62790 4.66517 4.72548 4.75181 4.78746 4.82004 4.82556 4.94727 4.98134 4.99644 5.01825 5.08183 5.20482 5.27641 5.34806 5.43564 5.49846 5.62793 5.69192 5.81224 5.88654 5.94625 6.04673 6.09469 6.15570 6.39531 6.46227 6.69233 6.90231 7.43355 8.93780 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003784 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.418480 B = 7397.706346 C = 8779.002887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 N -0.535 5.535 4 C 0.208 3.792 5 C -0.517 4.517 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.105 3.895 14 C -0.096 4.096 15 C -0.091 4.091 16 C -0.147 4.147 17 C -0.102 4.102 18 C -0.170 4.170 19 C 0.095 3.905 20 N -0.501 5.501 21 C 0.059 3.941 22 C 0.060 3.940 23 N -0.551 5.551 24 C 0.025 3.975 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.060 0.940 32 H -0.005 1.005 33 H -0.023 1.023 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.022 0.978 47 H 0.084 0.916 48 H 0.031 0.969 49 H 0.104 0.896 50 H 0.057 0.943 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -0.591 -22.420 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.064 4.064 3 N -0.258 5.258 4 C 0.081 3.919 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.023 4.023 14 C -0.099 4.099 15 C -0.110 4.110 16 C -0.166 4.166 17 C -0.120 4.120 18 C -0.191 4.191 19 C -0.002 4.002 20 N -0.218 5.218 21 C -0.066 4.066 22 C -0.068 4.068 23 N -0.276 5.276 24 C -0.123 4.123 25 C -0.071 4.071 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.013 0.987 33 H -0.006 1.006 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.103 0.897 48 H 0.050 0.950 49 H 0.123 0.877 50 H 0.075 0.925 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.764 -0.431 -22.306 22.481 hybrid contribution -0.749 0.015 1.522 1.696 sum -3.513 -0.416 -20.784 21.083 Atomic orbital electron populations 1.22243 0.98700 1.01995 1.00593 1.21964 0.92698 0.90408 1.01342 1.62175 1.58985 1.02545 1.02093 1.19391 0.93370 0.92431 0.86668 1.21419 1.21176 1.20693 0.92291 0.92050 1.25849 0.96581 0.95452 1.01601 1.70080 1.36019 1.29340 1.22121 0.85503 0.79063 0.78647 0.77798 1.19442 1.21001 1.19307 1.20837 0.96512 0.96426 0.88538 1.19587 0.96985 1.00741 0.92562 1.21136 0.94161 0.96183 0.99528 1.21363 1.01011 1.01882 0.92302 1.21271 0.95504 0.97377 0.97881 1.21522 0.96759 1.02960 0.97844 1.18774 0.89979 0.98444 0.92985 1.59244 1.26350 1.11324 1.24930 1.22268 0.97335 0.85953 1.01073 1.22132 0.95004 1.00449 0.89255 1.62236 1.30660 1.12280 1.22412 1.22405 0.89329 0.98202 1.02334 1.22242 0.95886 0.87291 1.01671 1.22363 0.96186 1.01196 0.87252 0.92756 0.91181 0.94694 0.90639 0.92103 0.98672 1.00570 0.92857 0.92331 0.93808 0.86039 0.84594 0.83489 0.83903 0.93393 0.90856 0.89061 0.95190 0.90714 0.95890 0.89725 0.95022 0.87745 0.92462 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.63 9.23 71.98 0.66 -5.97 16 2 C 0.06 2.54 5.39 86.30 0.47 3.01 16 3 N -0.53 -23.54 3.42 -905.37 -3.10 -26.64 16 4 C 0.21 11.18 4.61 85.56 0.39 11.58 16 5 C -0.52 -29.57 8.48 25.60 0.22 -29.36 16 6 H 0.06 3.44 7.48 -2.91 -0.02 3.42 16 7 C 0.00 0.17 5.46 84.65 0.46 0.63 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 9 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.10 4.03 3.70 85.56 0.32 4.34 16 14 C -0.10 -3.19 5.28 -19.73 -0.10 -3.29 16 15 C -0.09 -2.91 8.02 22.25 0.18 -2.74 16 16 C -0.15 -3.72 10.04 22.29 0.22 -3.49 16 17 C -0.10 -2.21 10.04 22.25 0.22 -1.98 16 18 C -0.17 -3.93 8.86 22.40 0.20 -3.73 16 19 C 0.10 2.67 5.36 38.22 0.20 2.88 16 20 N -0.50 -13.09 4.20 -694.79 -2.92 -16.01 16 21 C 0.06 1.56 5.28 86.31 0.46 2.02 16 22 C 0.06 1.39 5.62 86.31 0.49 1.88 16 23 N -0.55 -10.89 4.97 -921.92 -4.58 -15.47 16 24 C 0.03 0.39 9.60 127.69 1.23 1.61 16 25 C 0.06 1.04 5.62 86.31 0.49 1.52 16 26 C 0.06 1.12 4.34 86.31 0.37 1.50 16 27 H 0.05 1.95 6.44 -2.39 -0.02 1.93 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.03 1.51 6.10 -2.39 -0.01 1.50 16 30 H 0.08 2.70 6.50 -2.39 -0.02 2.68 16 31 H 0.06 2.62 7.09 -2.39 -0.02 2.60 16 32 H 0.00 -0.28 7.75 -2.39 -0.02 -0.30 16 33 H -0.02 -1.35 5.93 -2.39 -0.01 -1.36 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.06 2.39 5.83 -2.39 -0.01 2.38 16 36 H 0.04 1.74 5.60 -2.39 -0.01 1.72 16 37 H 0.12 4.37 6.77 -2.91 -0.02 4.35 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.14 2.58 5.90 -2.91 -0.02 2.56 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 2.24 4.94 -2.39 -0.01 2.23 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.08 1.02 8.13 -2.38 -0.02 1.00 16 48 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 1.39 8.13 -2.38 -0.02 1.37 16 50 H 0.06 1.07 7.01 -2.39 -0.02 1.06 16 51 H 0.09 1.65 7.78 -2.38 -0.02 1.63 16 Total: -1.00 -65.10 380.49 -0.92 -66.02 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.90 Total: 21.36 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 6.47 Total: -19.60 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -10.32 Total: -114.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.10 -0.92 -66.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140972809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.976 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds