Wall clock time and date at job start Tue Mar 31 2020 12:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 C 1.53008 * 109.47298 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47428 * 180.02562 * 4 3 2 6 6 C 1.36944 * 120.00190 * 269.77396 * 5 4 3 7 7 H 1.07991 * 119.99885 * 322.09031 * 6 5 4 8 8 C 1.38812 * 119.99994 * 142.08335 * 6 5 4 9 9 N 1.31615 * 119.99709 * 157.00139 * 8 6 5 10 10 Si 1.86801 * 120.00244 * 337.00106 * 8 6 5 11 11 H 1.48501 * 109.46944 * 95.70134 * 10 8 6 12 12 H 1.48493 * 109.47194 * 215.70196 * 10 8 6 13 13 H 1.48496 * 109.47056 * 335.70519 * 10 8 6 14 14 C 1.46502 * 120.00326 * 89.77053 * 5 4 3 15 15 C 1.50701 * 109.46864 * 90.00130 * 14 5 4 16 16 N 1.29000 * 124.90696 * 90.00473 * 15 14 5 17 17 C 1.31811 * 117.13261 * 180.02562 * 16 15 14 18 18 C 1.33730 * 114.47393 * 359.97438 * 17 16 15 19 19 Br 1.89097 * 126.04418 * 179.97438 * 18 17 16 20 20 S 1.70978 * 124.90367 * 270.00197 * 15 14 5 21 21 H 1.09004 * 109.47251 * 300.00003 * 1 2 3 22 22 H 1.09007 * 109.47027 * 59.99721 * 1 2 3 23 23 H 1.08991 * 109.47535 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47227 * 240.00030 * 2 1 3 25 25 H 1.08994 * 109.47182 * 119.99960 * 2 1 3 26 26 H 1.09005 * 109.47503 * 60.00499 * 3 2 1 27 27 H 1.08998 * 109.47500 * 299.99836 * 3 2 1 28 28 H 1.09005 * 109.46321 * 59.99916 * 4 3 2 29 29 H 1.08998 * 109.46827 * 300.00389 * 4 3 2 30 30 H 0.97006 * 119.99791 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46921 * 330.00469 * 14 5 4 32 32 H 1.08988 * 109.47569 * 210.00199 * 14 5 4 33 33 H 1.08002 * 122.76599 * 179.72695 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2916 3.4680 -1.1844 7 1 4.7138 2.9277 -2.0187 8 6 3.9851 4.8157 -1.3139 9 7 4.5895 5.5430 -2.2293 10 14 2.7148 5.5970 -0.1890 11 1 3.4007 6.2423 0.9593 12 1 1.9464 6.6188 -0.9443 13 1 1.7877 4.5511 0.3126 14 6 4.2973 3.5156 1.2703 15 6 5.7187 3.2793 1.7114 16 7 6.7226 4.0267 1.3990 17 6 7.9027 3.6761 1.8700 18 6 7.8928 2.5707 2.6225 19 35 9.3938 1.7789 3.4567 20 16 6.2338 1.9816 2.6985 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9336 0.9285 -0.8892 29 1 3.9330 0.9288 0.8908 30 1 4.3756 6.4848 -2.3195 31 1 3.6133 3.1323 2.0275 32 1 4.1309 4.5846 1.1382 33 1 8.8042 4.2333 1.6618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142721610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:23 Heat of formation + Delta-G solvation = 58.727099 kcal Electronic energy + Delta-G solvation = -16847.651949 eV Core-core repulsion = 14082.079063 eV Total energy + Delta-G solvation = -2765.572886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 318.010 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.22721 -36.74481 -34.27443 -32.16846 -31.64575 -29.82871 -28.10656 -26.48598 -24.22971 -23.51158 -21.23472 -20.37261 -19.26777 -18.00347 -16.78316 -15.54013 -15.10052 -14.87028 -14.74871 -13.86354 -13.74950 -13.34983 -13.21825 -12.86363 -12.40323 -12.17134 -12.07387 -11.62109 -11.41814 -11.10927 -10.97245 -10.79751 -10.64802 -10.44465 -10.27347 -10.22529 -9.97878 -9.69193 -9.08745 -8.84253 -8.62561 -8.43772 -7.10648 -6.12389 -3.52582 0.90640 1.18669 1.89506 2.18269 3.19664 3.27127 3.39928 3.41970 4.41291 4.64269 4.84047 5.16974 5.29104 5.41494 5.48472 5.54496 5.60960 5.78104 5.84251 6.06120 6.13501 6.17212 6.21715 6.29266 6.38683 6.43353 6.50412 6.78315 6.95958 7.86179 8.19937 8.27688 8.76809 9.54343 9.88204 11.01735 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.004724 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.738944 B = 5926.092721 C = 7245.596482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.147 3.853 5 N -0.579 5.579 6 C -0.272 4.272 7 H 0.080 0.920 8 C 0.052 3.948 9 N -0.878 5.878 10 Si 0.865 3.135 11 H -0.281 1.281 12 H -0.296 1.296 13 H -0.261 1.261 14 C 0.193 3.807 15 C 0.089 3.911 16 N -0.461 5.461 17 C 0.098 3.902 18 C -0.276 4.276 19 Br 0.001 6.999 20 S 0.115 5.885 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -9.280 11.911 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.021 3.979 5 N -0.299 5.299 6 C -0.401 4.401 7 H 0.098 0.902 8 C -0.152 4.152 9 N -0.516 5.516 10 Si 0.694 3.306 11 H -0.208 1.208 12 H -0.224 1.224 13 H -0.186 1.186 14 C 0.062 3.938 15 C -0.192 4.192 16 N -0.175 5.175 17 C -0.058 4.058 18 C -0.476 4.476 19 Br 0.084 6.916 20 S 0.369 5.631 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.957 -9.799 12.217 15.938 hybrid contribution 0.057 1.248 0.087 1.252 sum 3.014 -8.551 12.304 15.284 Atomic orbital electron populations 1.21763 0.96561 1.00731 1.01692 1.21494 0.95280 0.97883 1.01391 1.22181 0.98301 0.95061 1.02300 1.21034 0.91798 0.85445 0.99576 1.44232 1.72332 1.12039 1.01287 1.18714 1.37962 0.93623 0.89829 0.90202 1.25409 0.97066 0.96565 0.96154 1.69881 1.39261 1.07008 1.35461 0.87091 0.83616 0.79325 0.80574 1.20830 1.22360 1.18569 1.20411 0.84518 0.99852 0.88987 1.29539 1.02756 0.92409 0.94543 1.66501 0.97852 1.30832 1.22308 1.21965 0.96865 0.93272 0.93743 1.27449 0.97622 1.06204 1.16365 1.96579 1.34749 1.81416 1.78901 1.83839 0.98208 1.32497 1.48583 0.93122 0.92826 0.93424 0.92231 0.92642 0.92995 0.91303 0.92458 0.94261 0.92364 0.91384 0.89391 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.61 5.93 -26.73 -0.16 -1.77 16 3 C -0.14 -2.30 5.54 -26.73 -0.15 -2.45 16 4 C 0.15 2.69 5.67 -4.04 -0.02 2.67 16 5 N -0.58 -12.89 2.05 -174.61 -0.36 -13.25 16 6 C -0.27 -7.25 9.90 -15.06 -0.15 -7.40 16 7 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.05 1.43 5.29 -17.43 -0.09 1.34 16 9 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 10 Si 0.87 20.94 25.10 -169.99 -4.27 16.67 16 11 H -0.28 -6.73 6.68 56.52 0.38 -6.35 16 12 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 13 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.19 4.03 5.09 -5.19 -0.03 4.00 16 15 C 0.09 1.78 6.97 -13.47 -0.09 1.69 16 16 N -0.46 -9.94 10.54 -11.84 -0.12 -10.06 16 17 C 0.10 1.77 11.30 -19.14 -0.22 1.55 16 18 C -0.28 -4.48 7.08 29.15 0.21 -4.27 16 19 Br 0.00 0.02 34.09 -68.01 -2.32 -2.30 16 20 S 0.12 1.88 23.18 -107.50 -2.49 -0.62 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 29 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.09 2.05 3.37 -51.94 -0.18 1.88 16 33 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -28.99 311.49 -8.82 -37.81 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.40 Total: -1.60 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.33 Total: -6.06 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.29 Total: -48.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.27 Total: 16.67 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.62 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.32 Total: -2.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.99 -8.82 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142721610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.532 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds