Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47523 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.46977 * 29.99900 * 3 2 1 6 6 H 1.48500 * 109.47393 * 149.99556 * 3 2 1 7 7 C 1.37886 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46606 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00160 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99947 * 180.02562 * 10 9 7 13 13 C 1.40000 * 120.00396 * 175.59766 * 12 10 9 14 14 C 1.38824 * 120.48813 * 34.50891 * 13 12 10 15 15 N 1.31819 * 120.69879 * 179.97438 * 14 13 12 16 16 C 1.31898 * 121.83447 * 359.97438 * 15 14 13 17 17 C 1.38275 * 120.91258 * 0.02562 * 16 15 14 18 18 Br 1.89093 * 120.40092 * 179.97438 * 17 16 15 19 19 C 1.38764 * 119.20352 * 359.73926 * 17 16 15 20 20 Cl 1.73600 * 120.83823 * 180.27495 * 19 17 16 21 21 H 0.97004 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47274 * 299.99658 * 9 7 2 23 23 H 1.08993 * 109.47043 * 59.99902 * 9 7 2 24 24 H 0.97006 * 119.99735 * 355.59070 * 12 10 9 25 25 H 1.07995 * 119.64983 * 359.96113 * 14 13 12 26 26 H 1.07997 * 119.54466 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0018 11 8 3.4228 -3.4230 0.0022 12 7 1.7811 -4.9153 0.0015 13 6 2.6875 -5.9783 -0.0904 14 6 3.9399 -5.8892 0.5021 15 7 4.7964 -6.8878 0.4186 16 6 4.5049 -8.0025 -0.2234 17 6 3.2781 -8.1674 -0.8396 18 35 2.8758 -9.7714 -1.7567 19 6 2.3438 -7.1436 -0.7728 20 17 0.7879 -7.3082 -1.5250 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5567 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 0.8296 -5.0934 0.0651 25 1 4.2153 -4.9924 1.0369 26 1 5.2346 -8.7975 -0.2684 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189291.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = -7.796688 kcal Electronic energy + Delta-G solvation = -15895.870515 eV Core-core repulsion = 12853.703045 eV Total energy + Delta-G solvation = -3042.167470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83977 -38.85612 -36.99553 -34.85888 -33.17994 -33.07178 -30.83532 -29.74503 -28.63894 -24.46704 -23.83169 -22.77110 -20.16032 -17.98809 -17.30169 -17.11570 -16.28917 -15.78972 -14.88293 -14.47414 -14.32281 -14.15971 -14.08794 -13.13231 -12.96955 -12.43406 -12.24155 -11.68343 -11.41252 -11.36067 -10.90537 -10.83691 -10.66646 -10.50192 -10.10700 -9.83926 -9.45114 -9.33811 -9.08110 -8.56577 -8.32368 -6.18727 -4.20021 0.57910 0.76324 1.11073 1.72734 3.12291 3.18894 3.28376 3.34408 3.41832 3.53095 4.31080 4.37559 4.45215 4.64413 4.87865 5.17538 5.20186 5.61498 5.88432 6.09183 6.63715 6.93935 7.08997 7.53414 7.64759 7.83678 8.09672 8.68167 8.90366 9.45884 10.93240 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.034852 B = 0.003417 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.212511 B = 8192.779879 C = 8804.266041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.518 3.482 11 O -0.516 6.516 12 N -0.680 5.680 13 C 0.134 3.866 14 C 0.123 3.877 15 N -0.451 5.451 16 C 0.111 3.889 17 C -0.124 4.124 18 Br -0.019 7.019 19 C -0.018 4.018 20 Cl -0.026 7.026 21 H 0.264 0.736 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.414 0.586 25 H 0.190 0.810 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -21.067 -2.066 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.095 0.905 9 C -0.030 4.030 10 C 0.310 3.690 11 O -0.390 6.390 12 N -0.327 5.327 13 C 0.033 3.967 14 C -0.038 4.038 15 N -0.159 5.159 16 C -0.049 4.049 17 C -0.208 4.208 18 Br 0.066 6.934 19 C -0.057 4.057 20 Cl 0.003 6.997 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.251 0.749 25 H 0.206 0.794 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.527 -21.178 -2.081 21.570 hybrid contribution -1.118 0.961 -0.373 1.520 sum 2.409 -20.217 -2.453 20.508 Atomic orbital electron populations 1.69943 1.06078 1.27239 1.50391 1.25001 0.94940 0.99613 0.94857 0.86386 0.79836 0.82376 0.78273 1.20529 1.21171 1.19560 1.21101 0.94271 0.88757 1.51218 0.90461 1.19308 0.93870 0.89603 1.00184 1.22577 0.91735 0.82445 0.72192 1.90553 1.17801 1.83768 1.46839 1.44299 1.09786 1.04701 1.73880 1.18826 0.93854 0.87930 0.96096 1.23499 0.87893 0.97660 0.94738 1.67912 1.32885 0.99833 1.15311 1.22809 0.92911 0.95981 0.93180 1.22802 0.97683 0.94504 1.05767 1.96748 1.94793 1.26934 1.74973 1.21065 0.89893 0.95570 0.99210 1.98406 1.24274 1.97437 1.79615 0.92676 0.92659 0.92680 0.74895 0.79355 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.29 55.43 0.74 -24.40 15 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.52 -14.01 8.92 -34.44 -0.31 -14.31 15 8 H 0.08 2.18 6.75 -52.49 -0.35 1.83 15 9 C 0.01 0.22 5.46 -29.03 -0.16 0.06 15 10 C 0.52 10.60 7.68 -10.98 -0.08 10.51 15 11 O -0.52 -11.88 12.90 5.55 0.07 -11.80 15 12 N -0.68 -10.92 5.10 -9.74 -0.05 -10.97 15 13 C 0.13 2.06 6.33 -83.50 -0.53 1.53 15 14 C 0.12 1.95 9.88 -17.34 -0.17 1.78 15 15 N -0.45 -6.58 10.35 -13.09 -0.14 -6.71 15 16 C 0.11 1.34 10.94 -17.51 -0.19 1.15 15 17 C -0.12 -1.53 6.25 -39.37 -0.25 -1.77 15 18 Br -0.02 -0.19 32.69 -68.01 -2.22 -2.42 15 19 C -0.02 -0.24 6.39 -38.97 -0.25 -0.49 15 20 Cl -0.03 -0.33 27.05 -51.86 -1.40 -1.73 15 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 22 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.41 5.66 8.17 -40.82 -0.33 5.33 15 25 H 0.19 3.24 6.20 -52.49 -0.33 2.92 15 26 H 0.17 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 273.30 15.07 4.12 4.12 Total: -1.00 -29.06 273.30 -7.36 -36.41 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -1.42 Total: 1.31 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.03 Total: -0.07 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.55 Total: -42.08 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.40 Total: -1.73 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.22 Total: -2.42 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.06 -7.36 -36.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189291.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.616 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds