Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48495 * 109.47523 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.46977 * 29.99900 * 3 2 1 6 6 H 1.48500 * 109.47393 * 149.99556 * 3 2 1 7 7 C 1.37886 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46606 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00160 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99947 * 180.02562 * 10 9 7 13 13 C 1.40000 * 120.00396 * 175.59766 * 12 10 9 14 14 C 1.38824 * 120.48813 * 34.50891 * 13 12 10 15 15 N 1.31819 * 120.69879 * 179.97438 * 14 13 12 16 16 C 1.31898 * 121.83447 * 359.97438 * 15 14 13 17 17 C 1.38275 * 120.91258 * 0.02562 * 16 15 14 18 18 Br 1.89093 * 120.40092 * 179.97438 * 17 16 15 19 19 C 1.38764 * 119.20352 * 359.73926 * 17 16 15 20 20 Cl 1.73600 * 120.83823 * 180.27495 * 19 17 16 21 21 H 0.97004 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47274 * 299.99658 * 9 7 2 23 23 H 1.08993 * 109.47043 * 59.99902 * 9 7 2 24 24 H 0.97006 * 119.99735 * 355.59070 * 12 10 9 25 25 H 1.07995 * 119.64983 * 359.96113 * 14 13 12 26 26 H 1.07997 * 119.54466 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0018 11 8 3.4228 -3.4230 0.0022 12 7 1.7811 -4.9153 0.0015 13 6 2.6875 -5.9783 -0.0904 14 6 3.9399 -5.8892 0.5021 15 7 4.7964 -6.8878 0.4186 16 6 4.5049 -8.0025 -0.2234 17 6 3.2781 -8.1674 -0.8396 18 35 2.8758 -9.7714 -1.7567 19 6 2.3438 -7.1436 -0.7728 20 17 0.7879 -7.3082 -1.5250 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5567 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 0.8296 -5.0934 0.0651 25 1 4.2153 -4.9924 1.0369 26 1 5.2346 -8.7975 -0.2684 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189291.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = -26.153799 kcal Electronic energy + Delta-G solvation = -15896.666539 eV Core-core repulsion = 12853.703045 eV Total energy + Delta-G solvation = -3042.963494 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07622 -40.30797 -38.05653 -36.26972 -35.15234 -34.16278 -32.22619 -30.96519 -30.19495 -26.19855 -24.96549 -24.21326 -21.66218 -19.25658 -18.72254 -18.43277 -17.95140 -17.35542 -16.56415 -16.07971 -15.57880 -15.36518 -15.22241 -14.81671 -14.25842 -13.99753 -13.49668 -13.40283 -12.83768 -12.67174 -12.50363 -12.39340 -12.06994 -11.94030 -11.49122 -11.48279 -10.92337 -10.78684 -10.63487 -10.31855 -9.57154 -8.26775 -6.33980 -0.51803 -0.36218 0.12615 0.65547 1.41986 1.42626 1.54113 1.58460 1.86444 2.34379 2.42798 3.09830 3.27387 3.32755 3.55195 3.68831 4.06403 4.31133 4.55975 4.88091 5.03069 5.19611 5.36440 5.71104 5.93174 6.32074 6.54456 6.78446 7.10040 7.35783 8.84969 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.034852 B = 0.003417 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.212511 B = 8192.779879 C = 8804.266041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.528 3.472 11 O -0.547 6.547 12 N -0.663 5.663 13 C 0.113 3.887 14 C 0.111 3.889 15 N -0.464 5.464 16 C 0.124 3.876 17 C -0.126 4.126 18 Br 0.010 6.990 19 C -0.012 4.012 20 Cl -0.013 7.013 21 H 0.268 0.732 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.425 0.575 25 H 0.169 0.831 26 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -22.594 -2.616 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.027 4.027 10 C 0.319 3.681 11 O -0.423 6.423 12 N -0.311 5.311 13 C 0.013 3.987 14 C -0.048 4.048 15 N -0.173 5.173 16 C -0.036 4.036 17 C -0.209 4.209 18 Br 0.094 6.906 19 C -0.051 4.051 20 Cl 0.016 6.984 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.264 0.736 25 H 0.186 0.814 26 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.730 -22.745 -2.630 23.198 hybrid contribution -1.196 1.221 -0.253 1.728 sum 2.534 -21.523 -2.883 21.863 Atomic orbital electron populations 1.70012 1.07074 1.28165 1.50895 1.25731 0.95790 1.02624 0.94470 0.85484 0.78572 0.78789 0.78448 1.19941 1.20112 1.19738 1.21338 0.93848 0.90832 1.51503 0.92150 1.19113 0.94022 0.89796 0.99791 1.21856 0.90548 0.83369 0.72282 1.90544 1.18621 1.84560 1.48542 1.43755 1.10541 1.03675 1.73093 1.18752 0.93700 0.88303 0.97906 1.23220 0.88518 0.97722 0.95356 1.67918 1.32828 1.00372 1.16174 1.23408 0.93379 0.95642 0.91141 1.23000 0.97334 0.95175 1.05397 1.96792 1.94690 1.24823 1.74271 1.21130 0.90624 0.95034 0.98346 1.98415 1.23413 1.97343 1.79242 0.92354 0.92817 0.93176 0.73560 0.81371 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 13.29 21.45 0.28 -51.54 15 2 C 0.01 0.72 5.46 84.66 0.46 1.18 15 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 7 C -0.54 -29.79 8.92 25.60 0.23 -29.56 15 8 H 0.06 3.50 6.75 -2.91 -0.02 3.48 15 9 C 0.01 0.58 5.46 29.10 0.16 0.73 15 10 C 0.53 22.05 7.68 87.66 0.67 22.73 15 11 O -0.55 -25.91 12.90 -3.06 -0.04 -25.95 15 12 N -0.66 -21.33 5.10 -303.11 -1.55 -22.87 15 13 C 0.11 3.43 6.33 38.24 0.24 3.67 15 14 C 0.11 3.56 9.88 84.83 0.84 4.40 15 15 N -0.46 -13.05 10.35 -195.32 -2.02 -15.07 15 16 C 0.12 2.70 10.94 84.69 0.93 3.62 15 17 C -0.13 -2.78 6.25 22.40 0.14 -2.64 15 18 Br 0.01 0.17 32.69 -20.37 -0.67 -0.50 15 19 C -0.01 -0.30 6.39 22.66 0.14 -0.16 15 20 Cl -0.01 -0.30 27.05 -2.72 -0.07 -0.38 15 21 H 0.27 14.18 8.31 -92.71 -0.77 13.41 15 22 H 0.05 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.05 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.43 11.47 8.17 -92.70 -0.76 10.71 15 25 H 0.17 6.05 6.20 -2.91 -0.02 6.03 15 26 H 0.21 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -61.79 273.30 2.27 -59.52 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.49 Total: 7.05 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.81 Total: 3.96 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -3.28 Total: -89.48 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.07 Total: -0.38 kcal Atomic # 35 Polarization: 0.17 SS G_CDS: -0.67 Total: -0.50 kcal Total: -61.79 2.27 -59.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189291.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.362 kcal (2) G-P(sol) polarization free energy of solvation -61.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds