Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46895 * 109.47068 * 2 1 4 4 C 1.46900 * 110.99899 * 161.48301 * 3 2 1 5 5 C 1.52995 * 109.46930 * 289.52586 * 4 3 2 6 6 C 1.46908 * 110.99930 * 285.43261 * 3 2 1 7 7 C 1.53120 * 109.52443 * 294.68661 * 6 3 2 8 8 C 1.53036 * 109.27804 * 182.43670 * 7 6 3 9 9 N 1.46846 * 109.52028 * 59.18252 * 8 7 6 10 10 C 1.38373 * 110.99718 * 174.16066 * 9 8 7 11 11 C 1.39710 * 119.42946 * 179.72289 * 10 9 8 12 12 C 1.36553 * 119.49221 * 179.76458 * 11 10 9 13 13 C 1.41321 * 118.41100 * 0.49759 * 12 11 10 14 14 C 1.41205 * 120.57151 * 179.72579 * 13 12 11 15 15 H 1.08003 * 120.00103 * 159.55606 * 14 13 12 16 16 C 1.39868 * 119.99968 * 339.55291 * 14 13 12 17 17 N 1.30899 * 120.00220 * 330.53754 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 150.53987 * 16 14 13 19 19 H 1.48506 * 109.47018 * 94.91157 * 18 16 14 20 20 H 1.48495 * 109.47468 * 214.91218 * 18 16 14 21 21 H 1.48501 * 109.47074 * 334.91515 * 18 16 14 22 22 C 1.40751 * 118.85838 * 359.74987 * 13 12 11 23 23 C 1.50701 * 119.81804 * 180.02562 * 22 13 12 24 24 N 1.31489 * 120.36660 * 359.97438 * 22 13 12 25 25 C 1.46845 * 111.19665 * 298.25370 * 9 8 7 26 26 C 1.53042 * 109.52393 * 61.74582 * 25 9 8 27 27 H 1.09002 * 109.46587 * 188.39039 * 1 2 3 28 28 H 1.08993 * 109.47297 * 308.38992 * 1 2 3 29 29 H 1.09003 * 109.46556 * 68.39511 * 1 2 3 30 30 H 1.08994 * 109.46926 * 239.99453 * 2 1 3 31 31 H 1.08995 * 109.46674 * 119.99998 * 2 1 3 32 32 H 1.08998 * 109.47024 * 49.52726 * 4 3 2 33 33 H 1.09004 * 109.46787 * 169.52658 * 4 3 2 34 34 H 1.09004 * 109.46928 * 186.51867 * 5 4 3 35 35 H 1.08999 * 109.47555 * 306.52163 * 5 4 3 36 36 H 1.09003 * 109.46914 * 66.52844 * 5 4 3 37 37 H 1.09007 * 109.56978 * 54.84198 * 6 3 2 38 38 H 1.08998 * 109.49939 * 62.49564 * 7 6 3 39 39 H 1.08992 * 109.50153 * 302.37859 * 7 6 3 40 40 H 1.09000 * 109.46441 * 299.16496 * 8 7 6 41 41 H 1.08999 * 109.46059 * 179.19406 * 8 7 6 42 42 H 1.08007 * 120.25410 * 359.97438 * 11 10 9 43 43 H 1.08004 * 120.79474 * 180.24540 * 12 11 10 44 44 H 0.97001 * 120.00469 * 179.97438 * 17 16 14 45 45 H 1.08998 * 109.46730 * 269.97759 * 23 22 13 46 46 H 1.08996 * 109.47373 * 29.97379 * 23 22 13 47 47 H 1.09000 * 109.47095 * 149.97654 * 23 22 13 48 48 H 1.08998 * 109.46434 * 181.76322 * 25 9 8 49 49 H 1.09008 * 109.46573 * 301.72597 * 25 9 8 50 50 H 1.08990 * 109.50111 * 60.76267 * 26 25 9 51 51 H 1.09004 * 109.49960 * 180.88005 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4213 1.4478 0.4356 5 6 3.5051 1.1346 1.9307 6 6 1.8511 2.0029 -1.3221 7 6 2.7423 1.2855 -2.3397 8 6 2.6085 1.9719 -3.7010 9 7 3.0068 3.3802 -3.5817 10 6 3.0225 3.9976 -4.8200 11 6 3.3728 5.3471 -4.9098 12 6 3.3934 5.9564 -6.1316 13 6 3.0457 5.1936 -7.2693 14 6 3.0461 5.7793 -8.5542 15 1 3.1087 5.1541 -9.4327 16 6 2.9653 7.1691 -8.6893 17 7 2.3380 7.8792 -7.7861 18 14 3.7526 8.0120 -10.1587 19 1 2.7353 8.2029 -11.2236 20 1 4.2882 9.3332 -9.7432 21 1 4.8602 7.1698 -10.6776 22 6 2.6985 3.8402 -7.0996 23 6 2.3245 3.0066 -8.2981 24 7 2.6995 3.2989 -5.9013 25 6 2.1351 4.1011 -2.6453 26 6 2.2547 3.4783 -1.2524 27 1 -0.3632 -1.0167 0.1500 28 1 -0.3633 0.6381 0.8054 29 1 -0.3632 0.3784 -0.9555 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0081 0.7179 -0.1221 33 1 3.8145 2.4475 0.2511 34 1 4.5258 1.2938 2.2786 35 1 2.8282 1.7906 2.4780 36 1 3.2213 0.0960 2.1008 37 1 0.8088 1.9246 -1.6315 38 1 2.4317 0.2442 -2.4250 39 1 3.7802 1.3305 -2.0100 40 1 1.5730 1.9144 -4.0365 41 1 3.2527 1.4723 -4.4245 42 1 3.6288 5.9033 -4.0200 43 1 3.6650 6.9975 -6.2258 44 1 2.2823 8.8430 -7.8796 45 1 1.2496 3.0731 -8.4658 46 1 2.8529 3.3761 -9.1769 47 1 2.6007 1.9675 -8.1183 48 1 2.4354 5.1480 -2.6020 49 1 1.1017 4.0337 -2.9857 50 1 3.2849 3.5578 -0.9056 51 1 1.5958 4.0037 -0.5611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165053627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = 33.683898 kcal Electronic energy + Delta-G solvation = -27347.317109 eV Core-core repulsion = 23859.983878 eV Total energy + Delta-G solvation = -3487.333231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.95237 -38.63159 -36.63224 -34.07440 -32.55021 -32.00381 -31.34528 -30.43706 -30.01066 -28.09404 -26.92708 -24.82156 -23.67776 -23.13740 -22.73787 -21.46090 -20.51494 -19.94806 -18.71792 -17.34852 -16.66712 -15.80700 -15.54521 -15.37173 -14.97981 -14.53939 -14.38758 -14.17001 -13.96289 -13.58171 -13.43581 -12.94690 -12.88424 -12.64207 -12.43820 -12.26402 -12.07512 -12.00126 -11.83396 -11.72392 -11.61096 -11.48194 -11.41145 -11.24227 -11.10581 -10.99526 -10.87497 -10.64362 -10.58782 -10.42606 -10.37922 -10.08156 -9.85544 -9.29853 -8.57235 -8.26004 -8.19859 -8.00568 -7.17091 -6.87439 -4.33553 2.59422 2.91016 3.00263 3.03092 3.15769 3.81977 3.83639 4.33239 4.61228 4.83348 4.85221 5.01462 5.09590 5.15614 5.28449 5.37107 5.40638 5.44447 5.53588 5.55369 5.59539 5.60564 5.69590 5.84047 5.85437 5.88888 5.92851 5.97441 6.06519 6.09806 6.12087 6.23529 6.28145 6.29708 6.31529 6.42297 6.47418 6.57559 6.67494 6.70963 6.78572 6.96416 7.00292 7.10164 7.12565 7.32690 7.35774 7.49253 7.79065 8.00077 8.19949 8.47551 8.65085 8.78652 9.63805 9.95740 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.002731 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.165435 B =10250.268921 C =10702.586866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.042 3.958 5 C -0.146 4.146 6 C 0.083 3.917 7 C -0.150 4.150 8 C 0.082 3.918 9 N -0.464 5.464 10 C 0.158 3.842 11 C -0.144 4.144 12 C -0.131 4.131 13 C 0.062 3.938 14 C -0.451 4.451 15 H 0.088 0.912 16 C 0.083 3.917 17 N -0.774 5.774 18 Si 0.900 3.100 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.257 1.257 22 C 0.011 3.989 23 C -0.067 4.067 24 N -0.487 5.487 25 C 0.060 3.940 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.284 0.716 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.032 0.968 50 H 0.071 0.929 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -8.607 12.433 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.255 5.255 4 C -0.086 4.086 5 C -0.204 4.204 6 C -0.025 4.025 7 C -0.190 4.190 8 C -0.047 4.047 9 N -0.184 5.184 10 C -0.072 4.072 11 C -0.167 4.167 12 C -0.157 4.157 13 C 0.057 3.943 14 C -0.480 4.480 15 H 0.106 0.894 16 C -0.138 4.138 17 N -0.398 5.398 18 Si 0.723 3.277 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.131 4.131 23 C -0.125 4.125 24 N -0.200 5.200 25 C -0.068 4.068 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.600 -8.968 13.179 15.953 hybrid contribution 0.267 0.993 -1.589 1.893 sum -0.333 -7.975 11.590 14.072 Atomic orbital electron populations 1.21755 0.95118 1.01184 1.02319 1.22153 0.96073 0.89489 1.00794 1.62346 1.19304 1.17318 1.26527 1.22167 0.88951 1.01919 0.95517 1.21796 1.01339 1.01350 0.95913 1.21807 0.99457 0.94391 0.86825 1.22333 1.00903 0.99021 0.96702 1.21615 0.99648 0.88391 0.95037 1.59304 1.49061 1.02198 1.07885 1.18778 1.09635 0.90989 0.87760 1.20775 1.04351 0.93830 0.97699 1.21092 1.02977 1.00020 0.91615 1.18207 0.90426 0.91785 0.93868 1.19493 1.43699 0.91328 0.93481 0.89437 1.25969 0.92332 0.97964 0.97558 1.69917 1.27206 1.08524 1.34108 0.86430 0.80755 0.79005 0.81467 1.19390 1.19870 1.18092 1.20738 1.08072 0.93308 0.91027 1.20209 1.00030 0.97173 0.95044 1.66683 1.14696 1.39575 0.99032 1.22183 0.94801 0.98272 0.91541 1.21681 1.02113 0.94187 0.96437 0.92716 0.91931 0.92861 0.94284 0.91116 0.94737 0.90047 0.92573 0.91923 0.93195 0.90247 0.92002 0.91298 0.94659 0.90371 0.88320 0.86434 0.90511 0.93214 0.91864 0.93636 0.90390 0.94997 0.91028 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.86 37.16 0.37 -1.01 16 2 C 0.04 0.43 5.43 -3.82 -0.02 0.41 16 3 N -0.53 -5.95 4.40 -226.50 -1.00 -6.95 16 4 C 0.04 0.44 4.63 -3.83 -0.02 0.42 16 5 C -0.15 -1.28 9.83 37.16 0.37 -0.91 16 6 C 0.08 1.07 2.20 -67.59 -0.15 0.92 16 7 C -0.15 -2.08 4.75 -26.65 -0.13 -2.21 16 8 C 0.08 1.44 4.63 -3.83 -0.02 1.42 16 9 N -0.46 -8.95 4.66 -173.15 -0.81 -9.76 16 10 C 0.16 3.65 6.41 -155.13 -0.99 2.66 16 11 C -0.14 -3.39 9.09 -39.64 -0.36 -3.75 16 12 C -0.13 -3.33 8.81 -39.02 -0.34 -3.68 16 13 C 0.06 1.61 5.60 -106.65 -0.60 1.01 16 14 C -0.45 -11.38 8.45 -37.85 -0.32 -11.70 16 15 H 0.09 2.10 6.25 -52.48 -0.33 1.77 16 16 C 0.08 1.98 4.91 -17.34 -0.09 1.89 16 17 N -0.77 -19.11 11.50 55.54 0.64 -18.47 16 18 Si 0.90 17.70 29.65 -169.99 -5.04 12.66 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C 0.01 0.26 6.86 -81.79 -0.56 -0.30 16 23 C -0.07 -1.41 9.78 36.01 0.35 -1.06 16 24 N -0.49 -11.83 8.53 -8.05 -0.07 -11.90 16 25 C 0.06 1.00 5.23 -3.83 -0.02 0.98 16 26 C -0.11 -1.43 5.28 -26.65 -0.14 -1.57 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.54 7.11 -51.93 -0.37 0.17 16 30 H 0.04 0.41 5.97 -51.93 -0.31 0.10 16 31 H 0.07 0.64 6.27 -51.93 -0.33 0.32 16 32 H 0.03 0.37 7.02 -51.93 -0.36 0.01 16 33 H 0.08 0.90 5.68 -51.93 -0.29 0.61 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.41 6.69 -51.93 -0.35 0.06 16 37 H 0.08 1.08 6.84 -51.93 -0.36 0.73 16 38 H 0.06 0.79 6.39 -51.93 -0.33 0.46 16 39 H 0.07 0.98 6.60 -51.93 -0.34 0.64 16 40 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 42 H 0.10 2.09 7.09 -52.48 -0.37 1.72 16 43 H 0.12 3.02 6.42 -52.48 -0.34 2.68 16 44 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.28 6.22 -51.93 -0.32 0.95 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.32 6.61 -51.93 -0.34 0.97 16 49 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 50 H 0.07 0.96 6.04 -51.93 -0.31 0.65 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -26.70 378.27 -11.64 -38.34 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.40 Total: 6.84 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.67 Total: -16.46 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.23 Total: -47.08 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.04 Total: 12.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.70 -11.64 -38.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165053627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.026 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds