Wall clock time and date at job start Tue Mar 31 2020 11:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46895 * 109.47068 * 2 1 4 4 C 1.46900 * 110.99899 * 161.48301 * 3 2 1 5 5 C 1.52995 * 109.46930 * 289.52586 * 4 3 2 6 6 C 1.46908 * 110.99930 * 285.43261 * 3 2 1 7 7 C 1.53120 * 109.52443 * 294.68661 * 6 3 2 8 8 C 1.53036 * 109.27804 * 182.43670 * 7 6 3 9 9 N 1.46846 * 109.52028 * 59.18252 * 8 7 6 10 10 C 1.38373 * 110.99718 * 174.16066 * 9 8 7 11 11 C 1.39710 * 119.42946 * 179.72289 * 10 9 8 12 12 C 1.36553 * 119.49221 * 179.76458 * 11 10 9 13 13 C 1.41321 * 118.41100 * 0.49759 * 12 11 10 14 14 C 1.41205 * 120.57151 * 179.72579 * 13 12 11 15 15 H 1.08003 * 120.00103 * 159.55606 * 14 13 12 16 16 C 1.39868 * 119.99968 * 339.55291 * 14 13 12 17 17 N 1.30899 * 120.00220 * 330.53754 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 150.53987 * 16 14 13 19 19 H 1.48506 * 109.47018 * 94.91157 * 18 16 14 20 20 H 1.48495 * 109.47468 * 214.91218 * 18 16 14 21 21 H 1.48501 * 109.47074 * 334.91515 * 18 16 14 22 22 C 1.40751 * 118.85838 * 359.74987 * 13 12 11 23 23 C 1.50701 * 119.81804 * 180.02562 * 22 13 12 24 24 N 1.31489 * 120.36660 * 359.97438 * 22 13 12 25 25 C 1.46845 * 111.19665 * 298.25370 * 9 8 7 26 26 C 1.53042 * 109.52393 * 61.74582 * 25 9 8 27 27 H 1.09002 * 109.46587 * 188.39039 * 1 2 3 28 28 H 1.08993 * 109.47297 * 308.38992 * 1 2 3 29 29 H 1.09003 * 109.46556 * 68.39511 * 1 2 3 30 30 H 1.08994 * 109.46926 * 239.99453 * 2 1 3 31 31 H 1.08995 * 109.46674 * 119.99998 * 2 1 3 32 32 H 1.08998 * 109.47024 * 49.52726 * 4 3 2 33 33 H 1.09004 * 109.46787 * 169.52658 * 4 3 2 34 34 H 1.09004 * 109.46928 * 186.51867 * 5 4 3 35 35 H 1.08999 * 109.47555 * 306.52163 * 5 4 3 36 36 H 1.09003 * 109.46914 * 66.52844 * 5 4 3 37 37 H 1.09007 * 109.56978 * 54.84198 * 6 3 2 38 38 H 1.08998 * 109.49939 * 62.49564 * 7 6 3 39 39 H 1.08992 * 109.50153 * 302.37859 * 7 6 3 40 40 H 1.09000 * 109.46441 * 299.16496 * 8 7 6 41 41 H 1.08999 * 109.46059 * 179.19406 * 8 7 6 42 42 H 1.08007 * 120.25410 * 359.97438 * 11 10 9 43 43 H 1.08004 * 120.79474 * 180.24540 * 12 11 10 44 44 H 0.97001 * 120.00469 * 179.97438 * 17 16 14 45 45 H 1.08998 * 109.46730 * 269.97759 * 23 22 13 46 46 H 1.08996 * 109.47373 * 29.97379 * 23 22 13 47 47 H 1.09000 * 109.47095 * 149.97654 * 23 22 13 48 48 H 1.08998 * 109.46434 * 181.76322 * 25 9 8 49 49 H 1.09008 * 109.46573 * 301.72597 * 25 9 8 50 50 H 1.08990 * 109.50111 * 60.76267 * 26 25 9 51 51 H 1.09004 * 109.49960 * 180.88005 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4213 1.4478 0.4356 5 6 3.5051 1.1346 1.9307 6 6 1.8511 2.0029 -1.3221 7 6 2.7423 1.2855 -2.3397 8 6 2.6085 1.9719 -3.7010 9 7 3.0068 3.3802 -3.5817 10 6 3.0225 3.9976 -4.8200 11 6 3.3728 5.3471 -4.9098 12 6 3.3934 5.9564 -6.1316 13 6 3.0457 5.1936 -7.2693 14 6 3.0461 5.7793 -8.5542 15 1 3.1087 5.1541 -9.4327 16 6 2.9653 7.1691 -8.6893 17 7 2.3380 7.8792 -7.7861 18 14 3.7526 8.0120 -10.1587 19 1 2.7353 8.2029 -11.2236 20 1 4.2882 9.3332 -9.7432 21 1 4.8602 7.1698 -10.6776 22 6 2.6985 3.8402 -7.0996 23 6 2.3245 3.0066 -8.2981 24 7 2.6995 3.2989 -5.9013 25 6 2.1351 4.1011 -2.6453 26 6 2.2547 3.4783 -1.2524 27 1 -0.3632 -1.0167 0.1500 28 1 -0.3633 0.6381 0.8054 29 1 -0.3632 0.3784 -0.9555 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0081 0.7179 -0.1221 33 1 3.8145 2.4475 0.2511 34 1 4.5258 1.2938 2.2786 35 1 2.8282 1.7906 2.4780 36 1 3.2213 0.0960 2.1008 37 1 0.8088 1.9246 -1.6315 38 1 2.4317 0.2442 -2.4250 39 1 3.7802 1.3305 -2.0100 40 1 1.5730 1.9144 -4.0365 41 1 3.2527 1.4723 -4.4245 42 1 3.6288 5.9033 -4.0200 43 1 3.6650 6.9975 -6.2258 44 1 2.2823 8.8430 -7.8796 45 1 1.2496 3.0731 -8.4658 46 1 2.8529 3.3761 -9.1769 47 1 2.6007 1.9675 -8.1183 48 1 2.4354 5.1480 -2.6020 49 1 1.1017 4.0337 -2.9857 50 1 3.2849 3.5578 -0.9056 51 1 1.5958 4.0037 -0.5611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165053627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:02 Heat of formation + Delta-G solvation = 20.144237 kcal Electronic energy + Delta-G solvation = -27347.904233 eV Core-core repulsion = 23859.983878 eV Total energy + Delta-G solvation = -3487.920355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.35398 -40.10131 -38.03023 -35.81895 -34.00954 -33.08464 -32.75473 -31.78740 -31.61434 -29.12643 -28.72589 -26.42936 -24.93550 -24.37711 -23.80880 -22.86643 -22.05751 -21.58120 -19.81366 -19.20409 -18.15057 -17.26172 -16.74829 -16.65237 -16.44751 -15.79646 -15.67539 -15.44825 -15.19022 -15.04458 -14.69638 -14.50271 -14.42612 -14.04594 -13.75412 -13.61943 -13.36915 -13.22451 -13.12976 -12.99179 -12.82603 -12.78669 -12.64883 -12.53058 -12.52345 -12.36304 -12.19194 -12.14931 -11.86367 -11.66534 -11.50644 -11.34689 -11.17527 -11.08351 -10.32742 -10.08583 -9.89023 -9.15430 -8.97301 -8.67009 -6.22719 0.78045 1.03272 1.38467 1.46895 1.56802 2.17358 2.58843 2.89912 3.03815 3.62545 3.75698 3.84342 3.99254 4.02346 4.16430 4.25461 4.32994 4.34701 4.38991 4.50916 4.52216 4.55088 4.60230 4.65520 4.67926 4.71710 4.75792 4.80387 4.86845 4.95387 4.97270 4.98189 5.02106 5.07094 5.11407 5.12796 5.16743 5.17549 5.22051 5.25004 5.36125 5.39961 5.44890 5.49557 5.56116 5.77911 5.92678 6.17722 6.23877 6.25664 6.36785 6.62915 6.77771 6.92771 7.75680 8.18931 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.002731 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.165435 B =10250.268921 C =10702.586866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 N -0.530 5.530 4 C 0.040 3.960 5 C -0.140 4.140 6 C 0.090 3.910 7 C -0.136 4.136 8 C 0.088 3.912 9 N -0.466 5.466 10 C 0.157 3.843 11 C -0.151 4.151 12 C -0.150 4.150 13 C 0.032 3.968 14 C -0.478 4.478 15 H 0.092 0.908 16 C 0.045 3.955 17 N -0.806 5.806 18 Si 0.975 3.025 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.257 1.257 22 C -0.011 4.011 23 C -0.060 4.060 24 N -0.498 5.498 25 C 0.062 3.938 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.293 0.707 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.018 0.982 50 H 0.077 0.923 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 -9.240 13.493 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 N -0.254 5.254 4 C -0.088 4.088 5 C -0.198 4.198 6 C -0.018 4.018 7 C -0.176 4.176 8 C -0.041 4.041 9 N -0.186 5.186 10 C -0.074 4.074 11 C -0.173 4.173 12 C -0.176 4.176 13 C 0.027 3.973 14 C -0.507 4.507 15 H 0.110 0.890 16 C -0.173 4.173 17 N -0.430 5.430 18 Si 0.795 3.205 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.153 4.153 23 C -0.117 4.117 24 N -0.211 5.211 25 C -0.065 4.065 26 C -0.133 4.133 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.036 0.964 50 H 0.095 0.905 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.336 -9.619 14.261 17.205 hybrid contribution 0.156 1.141 -1.811 2.147 sum -0.180 -8.478 12.450 15.063 Atomic orbital electron populations 1.21731 0.94686 1.02073 1.01556 1.22231 0.96427 0.88688 1.01284 1.62379 1.19938 1.18174 1.24883 1.22224 0.88275 1.01522 0.96733 1.21743 1.02000 1.01650 0.94373 1.21656 0.98690 0.93961 0.87526 1.22226 1.01337 0.99427 0.94564 1.21570 0.97994 0.87531 0.96971 1.59303 1.49835 1.03061 1.06378 1.19214 1.08177 0.91051 0.88959 1.20972 1.04151 0.94337 0.97814 1.21124 1.04165 0.99779 0.92520 1.18558 0.91415 0.92667 0.94616 1.19741 1.45028 0.92510 0.93383 0.88989 1.26802 0.92020 0.98047 1.00473 1.69941 1.27813 1.09290 1.35942 0.85304 0.79645 0.77795 0.77765 1.18390 1.19115 1.18087 1.21299 1.08026 0.93676 0.92251 1.20187 1.00302 0.97337 0.93881 1.66802 1.15222 1.39834 0.99291 1.22225 0.93368 0.98288 0.92661 1.21601 1.02885 0.94587 0.94232 0.91166 0.92126 0.94033 0.94647 0.89704 0.94980 0.90676 0.91519 0.92223 0.92517 0.90901 0.90638 0.91195 0.96266 0.92342 0.86461 0.87442 0.89611 0.92743 0.91277 0.92308 0.90661 0.96356 0.90491 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.86 71.98 0.71 -1.69 16 2 C 0.04 0.73 5.43 86.31 0.47 1.19 16 3 N -0.53 -10.72 4.40 -870.51 -3.83 -14.55 16 4 C 0.04 0.74 4.63 86.30 0.40 1.14 16 5 C -0.14 -2.07 9.83 71.98 0.71 -1.36 16 6 C 0.09 2.18 2.20 44.99 0.10 2.28 16 7 C -0.14 -3.61 4.75 30.65 0.15 -3.47 16 8 C 0.09 3.10 4.63 86.33 0.40 3.50 16 9 N -0.47 -18.00 4.66 -701.73 -3.27 -21.28 16 10 C 0.16 7.35 6.41 133.32 0.85 8.21 16 11 C -0.15 -7.23 9.09 22.23 0.20 -7.03 16 12 C -0.15 -7.87 8.81 22.63 0.20 -7.67 16 13 C 0.03 1.72 5.60 -21.18 -0.12 1.60 16 14 C -0.48 -24.58 8.45 23.39 0.20 -24.39 16 15 H 0.09 4.48 6.25 -2.91 -0.02 4.46 16 16 C 0.05 2.17 4.91 85.23 0.42 2.59 16 17 N -0.81 -40.39 11.50 21.82 0.25 -40.14 16 18 Si 0.97 36.15 29.65 68.60 2.03 38.18 16 19 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 C -0.01 -0.56 6.86 43.22 0.30 -0.26 16 23 C -0.06 -2.53 9.78 71.24 0.70 -1.84 16 24 N -0.50 -24.74 8.53 -179.37 -1.53 -26.27 16 25 C 0.06 2.06 5.23 86.33 0.45 2.51 16 26 C -0.10 -2.42 5.28 30.65 0.16 -2.26 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 0.79 7.11 -2.39 -0.02 0.77 16 30 H 0.04 0.66 5.97 -2.39 -0.01 0.65 16 31 H 0.08 1.28 6.27 -2.39 -0.01 1.27 16 32 H 0.03 0.62 7.02 -2.39 -0.02 0.60 16 33 H 0.07 1.50 5.68 -2.39 -0.01 1.49 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.76 6.69 -2.39 -0.02 0.75 16 37 H 0.07 1.90 6.84 -2.38 -0.02 1.88 16 38 H 0.08 1.82 6.39 -2.39 -0.02 1.81 16 39 H 0.07 1.87 6.60 -2.39 -0.02 1.86 16 40 H 0.02 0.73 8.10 -2.39 -0.02 0.71 16 41 H 0.06 2.28 7.69 -2.39 -0.02 2.26 16 42 H 0.12 5.02 7.09 -2.91 -0.02 5.00 16 43 H 0.11 5.73 6.42 -2.91 -0.02 5.71 16 44 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 45 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.07 2.80 6.22 -2.39 -0.01 2.79 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.07 2.52 6.61 -2.39 -0.02 2.51 16 49 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.08 1.92 6.04 -2.39 -0.01 1.90 16 51 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -58.29 378.27 0.86 -57.43 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.92 Total: 33.53 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 6.29 Total: -26.91 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -8.38 Total: -102.23 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -58.29 0.86 -57.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165053627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.575 kcal (2) G-P(sol) polarization free energy of solvation -58.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds