Wall clock time and date at job start Tue Mar 31 2020 11:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99897 * 2 1 4 4 C 1.46898 * 111.00005 * 123.95352 * 2 1 3 5 5 C 1.53005 * 109.47145 * 58.06271 * 4 2 1 6 6 C 1.52995 * 109.47271 * 59.99743 * 5 4 2 7 7 C 1.53003 * 109.47101 * 60.00062 * 6 5 4 8 8 N 1.46900 * 109.47223 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99846 * 193.29795 * 8 7 6 10 10 C 1.50692 * 109.47450 * 74.35287 * 9 8 7 11 11 H 1.07999 * 120.00319 * 355.34156 * 10 9 8 12 12 C 1.37879 * 119.99941 * 175.33260 * 10 9 8 13 13 N 1.31519 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99911 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46615 * 90.00293 * 14 12 10 16 16 H 1.48501 * 109.47124 * 210.00290 * 14 12 10 17 17 H 1.48494 * 109.47308 * 330.00608 * 14 12 10 18 18 C 1.46898 * 111.00164 * 69.34154 * 8 7 6 19 19 C 1.50698 * 109.47266 * 190.00106 * 18 8 7 20 20 C 1.38679 * 120.41736 * 269.71953 * 19 18 8 21 21 C 1.38623 * 118.41772 * 179.78486 * 20 19 18 22 22 C 1.38230 * 119.16325 * 0.50800 * 21 20 19 23 23 N 1.31849 * 120.76194 * 359.73221 * 22 21 20 24 24 C 1.31887 * 121.72876 * 359.97438 * 23 22 21 25 25 C 1.52995 * 109.47076 * 300.00088 * 7 6 5 26 26 C 1.52999 * 109.47560 * 59.99933 * 25 7 6 27 27 H 1.08994 * 109.47106 * 296.04435 * 1 2 3 28 28 H 1.09000 * 109.46941 * 56.04861 * 1 2 3 29 29 H 1.09006 * 109.46991 * 176.04549 * 1 2 3 30 30 H 1.08997 * 109.46803 * 190.79072 * 3 2 1 31 31 H 1.09006 * 109.46890 * 310.78764 * 3 2 1 32 32 H 1.08993 * 109.47500 * 70.78992 * 3 2 1 33 33 H 1.09000 * 109.47427 * 298.06157 * 4 2 1 34 34 H 1.09001 * 109.47131 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.46734 * 299.99980 * 5 4 2 36 36 H 1.09000 * 109.47222 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47540 * 300.00359 * 6 5 4 38 38 H 1.09005 * 109.47144 * 59.99828 * 7 6 5 39 39 H 1.09003 * 109.46872 * 194.35900 * 9 8 7 40 40 H 1.09000 * 109.46900 * 314.34807 * 9 8 7 41 41 H 0.96997 * 119.99956 * 179.97438 * 13 12 10 42 42 H 1.09007 * 109.47140 * 309.99960 * 18 8 7 43 43 H 1.09005 * 109.47052 * 69.99777 * 18 8 7 44 44 H 1.08000 * 120.78629 * 0.02562 * 20 19 18 45 45 H 1.08004 * 120.41512 * 180.22574 * 21 20 19 46 46 H 1.08000 * 119.61803 * 179.74566 * 22 21 20 47 47 H 1.08003 * 119.62201 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.47107 * 299.99421 * 25 7 6 49 49 H 1.09001 * 109.47321 * 179.97438 * 25 7 6 50 50 H 1.08990 * 109.47493 * 179.97438 * 26 25 7 51 51 H 1.09005 * 109.47011 * 59.99235 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.4658 -2.2001 1.0756 6 6 1.9165 -2.8542 -0.2319 7 6 3.4452 -2.8720 -0.2929 8 7 3.8780 -3.4995 -1.5486 9 6 5.3108 -3.8212 -1.5099 10 6 5.5326 -5.0212 -0.6259 11 1 4.7049 -5.4516 -0.0818 12 6 6.7924 -5.5701 -0.5119 13 7 7.8005 -5.0459 -1.1742 14 14 7.0674 -7.0573 0.5845 15 1 6.8692 -8.2985 -0.2063 16 1 8.4520 -7.0277 1.1206 17 1 6.0999 -7.0279 1.7105 18 6 3.5611 -2.6450 -2.7007 19 6 3.7902 -3.4152 -3.9756 20 6 5.0279 -3.3867 -4.6003 21 6 5.1941 -4.1141 -5.7686 22 6 4.1251 -4.8299 -6.2742 23 7 2.9606 -4.8300 -5.6558 24 6 2.7680 -4.1544 -4.5396 25 6 3.9748 -1.4380 -0.2309 26 6 3.5242 -0.7838 1.0767 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0681 1.3488 -0.1924 31 1 1.4988 1.9512 -0.7781 32 1 1.8100 1.8318 0.9704 33 1 1.6744 -0.3000 2.0692 34 1 1.8561 -2.7683 1.9200 35 1 0.3768 -2.1873 1.1190 36 1 1.5388 -3.8757 -0.2763 37 1 1.5259 -2.2859 -1.0761 38 1 3.8359 -3.4404 0.5513 39 1 5.6608 -4.0428 -2.5182 40 1 5.8636 -2.9699 -1.1125 41 1 8.6867 -5.4317 -1.0937 42 1 2.5177 -2.3341 -2.6465 43 1 4.2037 -1.7645 -2.6876 44 1 5.8441 -2.8147 -4.1844 45 1 6.1455 -4.1178 -6.2799 46 1 4.2452 -5.3959 -7.1862 47 1 1.7998 -4.1780 -4.0616 48 1 3.5843 -0.8697 -1.0751 49 1 5.0639 -1.4507 -0.2739 50 1 3.9019 0.2376 1.1210 51 1 3.9147 -1.3522 1.9208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168314103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:15 Heat of formation + Delta-G solvation = 43.688033 kcal Electronic energy + Delta-G solvation = -28281.960502 eV Core-core repulsion = 24795.061082 eV Total energy + Delta-G solvation = -3486.899419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.95631 -39.37545 -36.98355 -34.03706 -32.68881 -31.81209 -31.06193 -30.81830 -28.47253 -27.26085 -27.12437 -24.79280 -23.73979 -23.12606 -22.33280 -21.84672 -21.48849 -19.51803 -18.40043 -16.61856 -16.35461 -15.84178 -15.74333 -15.44405 -15.26024 -15.02778 -14.60357 -14.32497 -13.72700 -13.54043 -13.38686 -13.07971 -12.93960 -12.66619 -12.55431 -12.45603 -12.31623 -12.10829 -12.07759 -11.93952 -11.59715 -11.33855 -11.20976 -10.98331 -10.85488 -10.76059 -10.63847 -10.52268 -10.29358 -9.86763 -9.75912 -9.51874 -9.24995 -9.12457 -8.93927 -8.45774 -8.36467 -8.25849 -7.11628 -5.99011 -3.98065 1.61596 1.80465 3.33837 3.39923 3.43219 3.94646 4.25994 4.47151 4.86207 4.88988 4.95382 5.05416 5.15875 5.27616 5.30057 5.31895 5.36810 5.41454 5.47268 5.49893 5.52639 5.57304 5.63360 5.67030 5.78165 5.79976 5.83346 5.87617 5.92629 5.94492 6.06872 6.11500 6.23237 6.26979 6.29746 6.32107 6.48500 6.60734 6.62225 6.62580 6.80127 6.83748 7.01914 7.09619 7.11638 7.19137 7.35522 7.42641 7.86468 8.16846 8.29678 8.43109 8.60334 9.08811 9.65038 11.11618 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.008970 B = 0.005397 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.751571 B = 5186.423124 C = 7359.388967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.532 5.532 3 C 0.024 3.976 4 C 0.087 3.913 5 C -0.112 4.112 6 C -0.101 4.101 7 C 0.099 3.901 8 N -0.523 5.523 9 C 0.185 3.815 10 C -0.498 4.498 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.095 3.905 19 C -0.108 4.108 20 C -0.058 4.058 21 C -0.173 4.173 22 C 0.083 3.917 23 N -0.494 5.494 24 C 0.110 3.890 25 C -0.142 4.142 26 C -0.108 4.108 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.039 0.961 40 H -0.009 1.009 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 10.966 -0.765 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.125 4.125 4 C -0.021 4.021 5 C -0.150 4.150 6 C -0.139 4.139 7 C -0.010 4.010 8 N -0.246 5.246 9 C 0.060 3.940 10 C -0.536 4.536 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.721 3.279 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.033 4.033 19 C -0.110 4.110 20 C -0.084 4.084 21 C -0.193 4.193 22 C -0.074 4.074 23 N -0.202 5.202 24 C -0.047 4.047 25 C -0.181 4.181 26 C -0.146 4.146 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.164 0.836 47 H 0.167 0.833 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.730 9.773 -1.631 15.354 hybrid contribution 1.402 0.778 1.873 2.466 sum -10.328 10.551 0.242 14.766 Atomic orbital electron populations 1.22430 0.87969 1.02439 0.99790 1.61971 1.07177 1.13040 1.43499 1.22398 1.01436 0.89037 0.99608 1.21679 0.95667 0.94352 0.90408 1.21623 0.99657 0.94332 0.99414 1.21461 0.96045 0.99831 0.96602 1.21531 0.93743 0.91939 0.93771 1.62368 1.22059 1.40498 0.99678 1.19888 0.80782 0.95240 0.98125 1.21146 0.93746 1.12642 1.26114 0.92134 1.24939 0.96130 0.97275 0.96186 1.69943 1.00306 1.41212 1.42562 0.86579 0.77164 0.83301 0.80850 1.20761 1.21442 1.19922 1.20948 1.00701 0.93183 0.88491 1.20858 0.94300 0.98923 0.96969 1.21547 0.96631 0.96734 0.93505 1.22034 1.00198 0.99398 0.97693 1.22557 0.88710 0.97028 0.99082 1.67611 1.24422 1.18880 1.09306 1.22489 0.98954 0.91995 0.91221 1.22100 1.00557 0.98135 0.97275 1.21548 0.93512 1.00284 0.99273 0.96288 0.91786 0.90840 0.91027 0.91875 0.96143 0.94975 0.91639 0.92373 0.92123 0.91299 0.89791 0.94303 0.99111 0.93120 0.90494 0.94762 0.85122 0.85419 0.83601 0.83309 0.91144 0.92220 0.92701 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.15 60.07 0.55 0.76 16 2 N -0.53 -6.05 3.36 -243.18 -0.82 -6.87 16 3 C 0.02 0.24 9.01 60.06 0.54 0.78 16 4 C 0.09 1.05 2.25 -67.71 -0.15 0.90 16 5 C -0.11 -1.40 5.02 -26.73 -0.13 -1.53 16 6 C -0.10 -1.50 5.06 -26.73 -0.14 -1.63 16 7 C 0.10 1.76 2.08 -67.71 -0.14 1.62 16 8 N -0.52 -10.57 4.35 -229.52 -1.00 -11.57 16 9 C 0.18 4.57 4.50 -4.98 -0.02 4.55 16 10 C -0.50 -13.74 8.54 -34.44 -0.29 -14.04 16 11 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.10 1.65 3.98 -4.98 -0.02 1.63 16 19 C -0.11 -1.93 4.95 -104.48 -0.52 -2.45 16 20 C -0.06 -1.03 8.03 -39.28 -0.32 -1.34 16 21 C -0.17 -2.79 10.11 -39.44 -0.40 -3.18 16 22 C 0.08 1.33 11.18 -17.55 -0.20 1.13 16 23 N -0.49 -8.71 10.36 -13.25 -0.14 -8.85 16 24 C 0.11 1.92 10.86 -17.55 -0.19 1.73 16 25 C -0.14 -2.28 4.26 -26.73 -0.11 -2.39 16 26 C -0.11 -1.45 5.01 -26.73 -0.13 -1.59 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.56 8.05 -51.93 -0.42 0.15 16 29 H 0.07 0.72 6.27 -51.93 -0.33 0.39 16 30 H 0.07 0.77 6.67 -51.93 -0.35 0.42 16 31 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 32 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.64 6.37 -51.93 -0.33 0.31 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 38 H 0.08 1.73 7.18 -51.93 -0.37 1.36 16 39 H 0.04 1.03 5.07 -51.93 -0.26 0.76 16 40 H -0.01 -0.23 6.40 -51.93 -0.33 -0.56 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 42 H 0.08 1.21 6.21 -51.92 -0.32 0.89 16 43 H 0.03 0.60 6.78 -51.93 -0.35 0.25 16 44 H 0.13 2.35 7.71 -52.49 -0.40 1.94 16 45 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 46 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 48 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 49 H 0.06 1.11 6.63 -51.93 -0.34 0.77 16 50 H 0.05 0.68 6.53 -51.93 -0.34 0.35 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -30.06 380.37 -10.80 -40.86 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.52 Total: 3.13 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.77 Total: -13.60 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -1.22 Total: -52.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.06 -10.80 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168314103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.547 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds