Wall clock time and date at job start Tue Mar 31 2020 11:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53005 * 109.47327 * 120.00214 * 2 1 3 5 5 C 1.52998 * 109.47005 * 174.99952 * 4 2 1 6 6 C 1.53003 * 109.46667 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.46990 * 305.00052 * 6 5 4 8 8 N 1.46891 * 109.47354 * 64.99907 * 6 5 4 9 9 C 1.46897 * 111.00473 * 227.81509 * 8 6 5 10 10 C 1.50701 * 109.47499 * 176.99411 * 9 8 6 11 11 C 1.38633 * 119.75031 * 89.99688 * 10 9 8 12 12 C 1.37616 * 120.24448 * 180.27664 * 11 10 9 13 13 C 1.40713 * 119.74928 * 359.52164 * 12 11 10 14 14 C 1.41392 * 120.24886 * 180.23071 * 13 12 11 15 15 H 1.07999 * 120.00476 * 205.20784 * 14 13 12 16 16 C 1.39949 * 119.99726 * 25.20884 * 14 13 12 17 17 N 1.30824 * 120.00077 * 17.27576 * 16 14 13 18 18 Si 1.86805 * 119.99829 * 197.27553 * 16 14 13 19 19 H 1.48495 * 109.47037 * 60.00096 * 18 16 14 20 20 H 1.48499 * 109.46971 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47032 * 299.99862 * 18 16 14 22 22 C 1.40718 * 119.50846 * 0.47562 * 13 12 11 23 23 C 1.37619 * 119.74512 * 359.75156 * 22 13 12 24 24 C 1.52998 * 109.46834 * 185.00379 * 6 5 4 25 25 C 1.53006 * 109.47010 * 296.55886 * 24 6 5 26 26 C 1.52996 * 109.47404 * 56.56337 * 24 6 5 27 27 C 1.53006 * 109.47048 * 176.56208 * 24 6 5 28 28 H 1.08994 * 109.46842 * 299.99875 * 1 2 3 29 29 H 1.08999 * 109.46829 * 59.99561 * 1 2 3 30 30 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47203 * 240.00603 * 2 1 3 32 32 H 1.08995 * 109.47483 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47193 * 300.00345 * 3 2 1 34 34 H 1.09010 * 109.46852 * 59.99921 * 3 2 1 35 35 H 1.09002 * 109.46705 * 54.99695 * 4 2 1 36 36 H 1.09003 * 109.46686 * 295.00339 * 4 2 1 37 37 H 1.09002 * 109.46855 * 60.00304 * 5 4 2 38 38 H 1.08996 * 109.47109 * 299.99996 * 5 4 2 39 39 H 1.00898 * 110.99969 * 351.76950 * 8 6 5 40 40 H 1.09003 * 109.46971 * 56.98660 * 9 8 6 41 41 H 1.09005 * 109.47090 * 296.99506 * 9 8 6 42 42 H 1.07995 * 119.87664 * 0.02562 * 11 10 9 43 43 H 1.08008 * 120.12744 * 179.72636 * 12 11 10 44 44 H 0.96999 * 119.99660 * 179.97438 * 17 16 14 45 45 H 1.08003 * 120.12846 * 179.72903 * 22 13 12 46 46 H 1.07998 * 119.87408 * 180.02562 * 23 22 13 47 47 H 1.08997 * 109.46645 * 60.00087 * 25 24 6 48 48 H 1.08995 * 109.46963 * 180.02562 * 25 24 6 49 49 H 1.08995 * 109.46857 * 300.00410 * 25 24 6 50 50 H 1.08994 * 109.47442 * 60.00299 * 26 24 6 51 51 H 1.09008 * 109.46995 * 179.97438 * 26 24 6 52 52 H 1.09004 * 109.47231 * 299.99715 * 26 24 6 53 53 H 1.09005 * 109.47000 * 61.17918 * 27 24 6 54 54 H 1.08993 * 109.47441 * 181.17350 * 27 24 6 55 55 H 1.08995 * 109.46899 * 301.18001 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0748 -1.5529 2.4368 7 1 3.7114 -1.0395 3.3271 8 7 3.5851 -2.9378 2.4362 9 6 3.0140 -3.2950 3.7416 10 6 2.4569 -4.6939 3.6806 11 6 3.2684 -5.7720 3.9987 12 6 2.7719 -7.0541 3.9408 13 6 1.4323 -7.2679 3.5668 14 6 0.9098 -8.5805 3.5087 15 1 0.0710 -8.7998 2.8648 16 6 1.4797 -9.5955 4.2855 17 7 2.2503 -9.2901 5.2977 18 14 1.1402 -11.3865 3.8771 19 1 1.6147 -11.6788 2.5007 20 1 1.8550 -12.2586 4.8434 21 1 -0.3196 -11.6456 3.9631 22 6 0.6179 -6.1661 3.2461 23 6 1.1370 -4.8929 3.3063 24 6 5.6048 -1.5529 2.4369 25 6 6.1149 -2.3472 1.2327 26 6 6.1148 -0.1130 2.3511 27 6 6.1148 -2.1986 3.7269 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1584 2.1370 37 1 3.9995 0.1675 1.1420 38 1 3.8532 -1.3939 0.3001 39 1 2.9151 -3.0841 1.6962 40 1 2.2156 -2.5965 3.9922 41 1 3.7916 -3.2465 4.5040 42 1 4.2952 -5.6053 4.2890 43 1 3.4070 -7.8930 4.1848 44 1 2.6449 -9.9937 5.8363 45 1 -0.4104 -6.3189 2.9536 46 1 0.5137 -4.0457 3.0610 47 1 5.7515 -1.8872 0.3138 48 1 7.2048 -2.3476 1.2330 49 1 5.7515 -3.3730 1.2939 50 1 5.7515 0.4529 3.2089 51 1 7.2049 -0.1130 2.3516 52 1 5.7515 0.3471 1.4321 53 1 5.7688 -3.2310 3.7778 54 1 7.2045 -2.1798 3.7365 55 1 5.7342 -1.6451 4.5852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168528442.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:41 Heat of formation + Delta-G solvation = -37.021414 kcal Electronic energy + Delta-G solvation = -27404.731195 eV Core-core repulsion = 24017.872295 eV Total energy + Delta-G solvation = -3386.858900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.30829 -39.26493 -37.24664 -36.06255 -34.76107 -32.50315 -31.20178 -30.90283 -28.24895 -27.99234 -27.93988 -27.83652 -26.09662 -24.38646 -22.82781 -22.65307 -21.62747 -20.80056 -19.21072 -19.17959 -17.18431 -16.85668 -16.43737 -16.25836 -15.71196 -15.65267 -15.45333 -15.25546 -14.73790 -14.69142 -14.54184 -14.25343 -14.09177 -13.79235 -13.51278 -13.36620 -13.31014 -13.16436 -13.04416 -12.90157 -12.75554 -12.66732 -12.53324 -12.46847 -12.36055 -12.18387 -12.11413 -11.91473 -11.84720 -11.53562 -11.47761 -11.43694 -11.28755 -11.21444 -11.01610 -10.95790 -10.95184 -9.31571 -9.24890 -8.99189 -8.61810 -6.31519 0.98526 1.17919 1.37137 1.48331 1.53508 2.20982 2.72438 3.46470 3.71292 3.83323 3.94372 4.03376 4.12695 4.18573 4.28953 4.34523 4.37720 4.41991 4.54091 4.62196 4.63933 4.66768 4.73849 4.80921 4.83557 4.85461 4.89195 4.94630 4.95539 5.00785 5.02471 5.05911 5.08641 5.12700 5.16582 5.18084 5.24256 5.26734 5.31339 5.34588 5.38046 5.41464 5.49276 5.50873 5.54003 5.56644 5.66566 5.74000 5.75117 5.98930 6.12719 6.27288 6.40017 6.42788 6.69200 6.73994 6.96706 7.07245 8.35234 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002982 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.286417 B = 9388.261686 C =10792.305894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.098 3.902 7 H 0.046 0.954 8 N -0.677 5.677 9 C 0.136 3.864 10 C -0.194 4.194 11 C -0.084 4.084 12 C -0.189 4.189 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.828 5.828 18 Si 0.980 3.020 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.242 4.242 23 C -0.085 4.085 24 C -0.053 4.053 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.136 4.136 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.338 0.662 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.287 0.713 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.044 0.956 54 H 0.052 0.948 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 18.819 -7.634 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.012 4.012 7 H 0.064 0.936 8 N -0.309 5.309 9 C 0.007 3.993 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.209 4.209 13 C 0.078 3.922 14 C -0.535 4.535 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.454 5.454 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.262 4.262 23 C -0.103 4.103 24 C -0.054 4.054 25 C -0.186 4.186 26 C -0.197 4.197 27 C -0.193 4.193 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.085 0.915 53 H 0.063 0.937 54 H 0.071 0.929 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.260 18.465 -7.281 20.534 hybrid contribution -1.116 -0.831 0.244 1.412 sum 4.144 17.634 -7.037 19.433 Atomic orbital electron populations 1.21849 0.95467 1.01402 1.01880 1.21077 0.95535 0.96845 0.97773 1.21861 1.01386 0.95183 1.01765 1.21662 0.95755 0.99776 0.98082 1.22063 0.95006 1.01551 0.97658 1.21619 0.94505 0.87576 0.97466 0.93593 1.60541 1.42839 1.22863 1.04621 1.20516 0.95937 0.91101 0.91705 1.19355 0.94208 0.94690 1.11335 1.20681 0.97871 0.92579 0.99169 1.21246 0.95743 0.95973 1.07941 1.17931 0.91711 0.93313 0.89250 1.19803 1.15794 0.94209 1.23713 0.90905 1.26740 0.92880 1.05790 0.92547 1.69879 1.25692 1.37127 1.12714 0.85285 0.79624 0.75715 0.79265 1.18569 1.19163 1.18357 1.21136 0.98528 0.93158 1.13359 1.20645 0.94970 0.95559 0.99160 1.20490 0.94056 0.95457 0.95372 1.21713 0.99511 1.00312 0.97046 1.21932 1.00979 0.94763 1.02053 1.21812 1.00166 1.00540 0.96798 0.92862 0.92056 0.93522 0.91464 0.91990 0.92382 0.92870 0.93465 0.92529 0.89402 0.91447 0.84278 0.95687 0.91824 0.88378 0.88659 0.90264 0.88883 0.87064 0.92550 0.93486 0.93403 0.92774 0.92421 0.91504 0.93652 0.92907 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.09 -1.54 2.92 -10.79 -0.03 -1.57 16 3 C -0.14 -1.97 8.95 71.98 0.64 -1.32 16 4 C -0.11 -2.17 4.54 30.60 0.14 -2.03 16 5 C -0.13 -2.27 3.66 30.59 0.11 -2.16 16 6 C 0.10 2.17 1.48 44.92 0.07 2.23 16 7 H 0.05 1.07 7.54 -2.38 -0.02 1.05 16 8 N -0.68 -19.09 4.94 -495.58 -2.45 -21.53 16 9 C 0.14 4.45 5.22 85.56 0.45 4.89 16 10 C -0.19 -8.14 5.38 -19.67 -0.11 -8.25 16 11 C -0.08 -3.98 9.67 22.22 0.21 -3.77 16 12 C -0.19 -10.29 8.69 22.73 0.20 -10.09 16 13 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 14 C -0.51 -28.19 9.05 23.46 0.21 -27.98 16 15 H 0.07 3.92 7.90 -2.91 -0.02 3.90 16 16 C 0.03 1.81 5.15 85.26 0.44 2.25 16 17 N -0.83 -44.73 10.97 21.83 0.24 -44.49 16 18 Si 0.98 39.36 29.59 68.60 2.03 41.39 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 23 C -0.08 -3.68 9.67 22.22 0.21 -3.46 16 24 C -0.05 -1.11 0.62 -52.18 -0.03 -1.14 16 25 C -0.13 -2.85 8.01 71.98 0.58 -2.28 16 26 C -0.14 -2.28 8.04 71.98 0.58 -1.70 16 27 C -0.14 -3.23 7.64 71.98 0.55 -2.68 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.78 6.56 -2.39 -0.02 0.76 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.05 1.06 6.78 -2.39 -0.02 1.04 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.34 4.51 -2.39 -0.01 1.33 16 38 H 0.07 1.30 6.77 -2.39 -0.02 1.28 16 39 H 0.34 9.85 6.65 -89.70 -0.60 9.25 16 40 H 0.03 0.78 8.01 -2.39 -0.02 0.76 16 41 H 0.06 2.10 6.66 -2.38 -0.02 2.08 16 42 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.10 5.46 6.20 -2.91 -0.02 5.44 16 44 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 45 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 46 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 47 H 0.06 1.12 6.63 -2.39 -0.02 1.10 16 48 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 1.31 7.51 -2.39 -0.02 1.29 16 50 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 52 H 0.07 0.95 6.26 -2.39 -0.01 0.93 16 53 H 0.04 1.31 6.80 -2.38 -0.02 1.29 16 54 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 55 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -57.84 415.03 5.04 -52.80 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.23 Total: 40.26 kcal Atomic # 6 Polarization: -73.42 SS G_CDS: 4.99 Total: -68.43 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -2.21 Total: -66.02 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -57.84 5.04 -52.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168528442.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.776 kcal (2) G-P(sol) polarization free energy of solvation -57.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds