Wall clock time and date at job start Tue Mar 31 2020 12:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99769 * 6.97720 * 3 2 1 5 5 N 3.51033 * 140.68327 * 6.97745 * 2 1 3 6 6 C 1.41122 * 120.00275 * 186.98171 * 3 2 1 7 7 C 1.38951 * 119.99844 * 353.75784 * 6 3 2 8 8 H 1.07996 * 119.99456 * 336.44513 * 7 6 3 9 9 C 1.40859 * 119.99999 * 156.44447 * 7 6 3 10 10 N 1.30325 * 120.00215 * 357.57051 * 9 7 6 11 11 Si 1.86800 * 120.00193 * 177.57013 * 9 7 6 12 12 H 1.48500 * 109.47009 * 59.99882 * 11 9 7 13 13 H 1.48502 * 109.47385 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46926 * 300.00312 * 11 9 7 15 15 N 1.38451 * 120.00344 * 173.75547 * 6 3 2 16 16 C 1.38502 * 119.99690 * 119.15552 * 15 6 3 17 17 N 1.32398 * 119.81104 * 5.47390 * 16 15 6 18 18 C 1.31840 * 121.79511 * 179.97438 * 17 16 15 19 19 C 1.38505 * 121.20857 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 120.25864 * 180.02562 * 19 18 17 21 21 C 1.38404 * 119.48313 * 0.02562 * 19 18 17 22 22 C 1.40040 * 118.35076 * 359.97438 * 21 19 18 23 23 C 1.47321 * 120.60971 * 180.02562 * 22 21 19 24 24 O 1.21516 * 119.99847 * 176.93171 * 23 22 21 25 25 O 1.34759 * 119.99692 * 356.94036 * 23 22 21 26 26 H 0.97001 * 119.99993 * 185.02419 * 10 9 7 27 27 H 0.96997 * 120.00404 * 299.15644 * 15 6 3 28 28 H 1.08002 * 119.38847 * 180.28674 * 18 17 16 29 29 H 1.08004 * 120.82747 * 179.97438 * 21 19 18 30 30 H 0.96708 * 116.99746 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.2300 -0.1507 5 7 3.8518 -2.2077 -0.2702 6 6 3.2731 1.2140 0.1486 7 6 2.5840 2.4205 0.1645 8 1 1.6113 2.4929 -0.2991 9 6 3.1542 3.5491 0.7854 10 7 4.3065 3.4499 1.3859 11 14 2.2586 5.1879 0.7479 12 1 0.9364 5.0447 1.4086 13 1 3.0629 6.2082 1.4673 14 1 2.0641 5.6136 -0.6614 15 7 4.6515 1.2023 0.2784 16 6 5.4407 1.8496 -0.6577 17 7 4.8726 2.5687 -1.6132 18 6 5.5860 3.2013 -2.5238 19 6 6.9697 3.1404 -2.5212 20 17 7.8847 3.9836 -3.7318 21 6 7.6172 2.4021 -1.5459 22 6 6.8399 1.7384 -0.5886 23 6 7.4773 0.9390 0.4721 24 8 6.7954 0.4135 1.3297 25 8 8.8165 0.7909 0.4914 26 1 4.6650 4.2067 1.8755 27 1 5.0644 0.7409 1.0250 28 1 5.0822 3.7809 -3.2832 29 1 8.6951 2.3394 -1.5235 30 1 9.1890 0.2578 1.2072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080531.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:50 Heat of formation + Delta-G solvation = -8.983235 kcal Electronic energy + Delta-G solvation = -23440.399965 eV Core-core repulsion = 19647.334330 eV Total energy + Delta-G solvation = -3793.065636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.031 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98360 -40.43585 -38.93962 -37.48134 -37.15638 -36.83596 -36.53078 -35.09485 -33.66558 -32.74876 -30.12728 -28.79487 -26.19198 -24.78306 -22.82667 -22.75680 -20.75491 -19.25956 -19.05715 -18.73886 -18.40097 -17.86379 -17.33912 -16.73868 -16.33465 -16.08483 -15.44180 -15.08933 -15.00667 -14.59133 -14.39311 -14.02734 -13.91188 -13.86218 -13.47888 -13.42060 -13.35087 -13.20114 -12.98426 -12.72737 -12.63474 -12.60510 -12.09170 -12.05117 -11.81974 -11.49211 -11.22534 -10.94097 -10.48179 -9.80279 -9.24852 -8.53211 -7.12872 -0.39927 0.18311 0.73677 1.18413 1.37761 1.50543 1.51649 1.58216 2.00875 2.03627 2.08970 2.19674 2.24807 2.55652 2.71886 2.83278 3.38398 3.54417 3.77264 3.79705 3.91967 3.98668 4.49480 4.58864 4.68444 4.71808 4.88258 5.22698 5.40472 5.50898 5.69862 6.03720 6.17332 6.46021 6.65721 6.96125 7.15142 7.24696 7.34413 7.73093 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.006274 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.399412 B = 4461.448006 C = 5601.066702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.332 3.668 3 C -0.328 4.328 4 C 0.313 3.687 5 N -0.558 5.558 6 C 0.357 3.643 7 C -0.335 4.335 8 H 0.107 0.893 9 C 0.050 3.950 10 N -0.735 5.735 11 Si 0.984 3.016 12 H -0.260 1.260 13 H -0.258 1.258 14 H -0.244 1.244 15 N -0.615 5.615 16 C 0.483 3.517 17 N -0.528 5.528 18 C 0.204 3.796 19 C -0.175 4.175 20 Cl -0.048 7.048 21 C 0.045 3.955 22 C -0.270 4.270 23 C 0.546 3.454 24 O -0.547 6.547 25 O -0.497 6.497 26 H 0.311 0.689 27 H 0.420 0.580 28 H 0.192 0.808 29 H 0.176 0.824 30 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.985 11.087 -3.736 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.026 3.974 3 C -0.347 4.347 4 C 0.007 3.993 5 N -0.242 5.242 6 C 0.253 3.747 7 C -0.362 4.362 8 H 0.125 0.875 9 C -0.180 4.180 10 N -0.354 5.354 11 Si 0.802 3.198 12 H -0.184 1.184 13 H -0.181 1.181 14 H -0.167 1.167 15 N -0.246 5.246 16 C 0.244 3.756 17 N -0.244 5.244 18 C 0.039 3.961 19 C -0.206 4.206 20 Cl -0.020 7.020 21 C 0.019 3.981 22 C -0.280 4.280 23 C 0.393 3.607 24 O -0.440 6.440 25 O -0.310 6.310 26 H 0.123 0.877 27 H 0.270 0.730 28 H 0.209 0.791 29 H 0.193 0.807 30 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 11.080 9.804 -3.915 15.304 hybrid contribution 1.157 0.143 1.032 1.557 sum 12.237 9.947 -2.883 16.031 Atomic orbital electron populations 1.81032 1.12457 1.09509 1.20646 1.24717 0.91306 0.91553 0.89858 1.12933 0.82859 0.86943 1.51975 1.25417 0.92147 0.91830 0.89903 1.81044 1.10307 1.11708 1.21122 1.16870 0.81062 0.90626 0.86150 1.20392 1.02410 0.92619 1.20776 0.87482 1.27166 0.94721 1.04291 0.91778 1.69515 1.14484 1.35502 1.15868 0.85143 0.79057 0.74411 0.81186 1.18422 1.18138 1.16747 1.42501 1.04273 1.51751 1.26059 1.18219 0.86019 0.85051 0.86283 1.67759 1.38783 1.12359 1.05506 1.23273 0.89272 0.90558 0.92961 1.21504 0.93187 1.07479 0.98473 1.98348 1.73461 1.76360 1.53788 1.21622 1.01509 0.87326 0.87631 1.19147 0.91710 1.13496 1.03645 1.20366 0.80862 0.76785 0.82642 1.90595 1.64125 1.49002 1.40264 1.84478 1.20754 1.69808 1.55977 0.87665 0.72979 0.79117 0.80692 0.70497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.97 18.54 19.00 0.35 -26.62 16 2 C 0.33 15.85 14.00 88.33 1.24 17.09 16 3 C -0.33 -15.35 5.88 -20.08 -0.12 -15.47 16 4 C 0.31 15.27 14.83 88.32 1.31 16.58 16 5 N -0.56 -28.10 18.54 19.01 0.35 -27.75 16 6 C 0.36 15.71 5.53 38.98 0.22 15.93 16 7 C -0.34 -13.90 7.53 23.08 0.17 -13.73 16 8 H 0.11 4.47 7.19 -2.91 -0.02 4.45 16 9 C 0.05 1.86 4.93 85.56 0.42 2.28 16 10 N -0.74 -27.53 10.85 21.98 0.24 -27.29 16 11 Si 0.98 28.76 29.57 68.60 2.03 30.79 16 12 H -0.26 -7.91 7.11 99.48 0.71 -7.20 16 13 H -0.26 -6.99 7.11 99.48 0.71 -6.28 16 14 H -0.24 -6.97 7.11 99.48 0.71 -6.26 16 15 N -0.62 -25.74 3.14 -184.09 -0.58 -26.32 16 16 C 0.48 17.94 6.01 133.58 0.80 18.75 16 17 N -0.53 -18.42 8.46 -192.25 -1.63 -20.05 16 18 C 0.20 5.45 10.96 84.76 0.93 6.38 16 19 C -0.17 -4.14 6.33 22.37 0.14 -4.00 16 20 Cl -0.05 -0.92 28.98 -2.72 -0.08 -1.00 16 21 C 0.04 1.11 9.53 22.75 0.22 1.33 16 22 C -0.27 -8.56 5.91 -19.89 -0.12 -8.68 16 23 C 0.55 16.80 8.26 70.21 0.58 17.38 16 24 O -0.55 -20.53 14.44 19.78 0.29 -20.24 16 25 O -0.50 -10.32 12.76 -56.69 -0.72 -11.05 16 26 H 0.31 10.44 8.29 -92.71 -0.77 9.67 16 27 H 0.42 18.44 5.32 -94.67 -0.50 17.94 16 28 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.18 3.32 7.70 -2.91 -0.02 3.30 16 30 H 0.43 5.07 9.11 -74.05 -0.67 4.40 16 Total: -1.00 -57.97 311.96 6.15 -51.82 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.11 Total: 23.87 kcal Atomic # 6 Polarization: 48.04 SS G_CDS: 5.79 Total: 53.84 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -1.26 Total: -128.02 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.44 Total: -31.29 kcal Atomic # 14 Polarization: 28.76 SS G_CDS: 2.03 Total: 30.79 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -57.97 6.15 -51.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080531.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.834 kcal (2) G-P(sol) polarization free energy of solvation -57.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds