Wall clock time and date at job start Tue Mar 31 2020 11:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47319 * 300.00215 * 3 2 1 6 6 H 1.48508 * 109.46796 * 59.99912 * 3 2 1 7 7 C 1.37871 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46825 * 299.99238 * 11 10 9 13 13 N 1.46904 * 109.46904 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00029 * 155.00222 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99645 * 15 14 13 17 17 C 1.53002 * 109.47628 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46891 * 59.99991 * 17 16 15 19 19 C 1.53002 * 109.47343 * 300.00400 * 18 17 16 20 20 C 1.53005 * 109.46982 * 299.99735 * 19 18 17 21 21 C 1.53006 * 109.46542 * 60.00168 * 20 19 18 22 22 C 1.53000 * 109.46806 * 300.00074 * 17 16 15 23 23 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 24 24 C 1.52997 * 109.47143 * 60.00066 * 19 18 17 25 25 C 1.52993 * 109.47083 * 60.00406 * 12 11 10 26 26 C 1.52994 * 109.47250 * 299.99728 * 25 12 11 27 27 H 0.97007 * 119.99974 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47277 * 59.99627 * 9 7 2 29 29 H 1.08993 * 109.47557 * 59.98977 * 10 9 7 30 30 H 1.09008 * 109.46885 * 299.99222 * 10 9 7 31 31 H 1.09005 * 109.46987 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47427 * 59.99785 * 11 10 9 33 33 H 1.08994 * 109.47263 * 300.00057 * 12 11 10 34 34 H 1.00908 * 110.99583 * 278.95135 * 13 12 11 35 35 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 36 36 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 37 37 H 1.09001 * 109.47362 * 300.00732 * 16 15 14 38 38 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 39 39 H 1.09001 * 109.47142 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.46870 * 180.02562 * 18 17 16 41 41 H 1.09004 * 109.47108 * 60.00292 * 18 17 16 42 42 H 1.09002 * 109.47067 * 180.02562 * 19 18 17 43 43 H 1.09000 * 109.47360 * 300.00293 * 20 19 18 44 44 H 1.08998 * 109.47061 * 179.97438 * 20 19 18 45 45 H 1.09004 * 109.46785 * 179.97438 * 21 20 19 46 46 H 1.08992 * 109.47399 * 299.99952 * 22 17 16 47 47 H 1.09004 * 109.46724 * 179.97438 * 22 17 16 48 48 H 1.09002 * 109.47103 * 300.00247 * 23 15 14 49 49 H 1.09001 * 109.47066 * 60.00169 * 23 15 14 50 50 H 1.09001 * 109.46832 * 180.02562 * 24 19 18 51 51 H 1.08993 * 109.47194 * 59.99677 * 24 19 18 52 52 H 1.09004 * 109.47538 * 59.99823 * 25 12 11 53 53 H 1.09001 * 109.46997 * 179.97438 * 25 12 11 54 54 H 1.09007 * 109.47107 * 299.99989 * 26 25 12 55 55 H 1.09005 * 109.47279 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 0.6002 -5.0683 1.2470 13 7 -0.1339 -6.3407 1.2468 14 6 -0.5010 -6.7369 2.6129 15 6 -1.2627 -8.0632 2.5720 16 6 -0.3748 -9.1423 1.9491 17 6 -1.1367 -10.4685 1.9076 18 6 -2.4038 -10.3025 1.0664 19 6 -3.2918 -9.2233 1.6891 20 6 -3.6747 -9.6363 3.1118 21 6 -2.4075 -9.8022 3.9530 22 6 -1.5195 -10.8814 3.3303 23 6 -1.6445 -8.4762 3.9947 24 6 -2.5299 -7.8972 1.7306 25 6 -0.3940 -3.9054 1.2468 26 6 0.3709 -2.5804 1.2473 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5562 -0.8919 29 1 2.8713 -3.6047 0.8889 30 1 2.8725 -3.6040 -0.8911 31 1 2.1885 -5.8156 -0.0023 32 1 0.8539 -5.0446 -0.8922 33 1 1.2265 -5.0107 2.1371 34 1 -0.9490 -6.2878 0.6542 35 1 0.4019 -6.8544 3.2121 36 1 -1.1340 -5.9683 3.0564 37 1 -0.1024 -8.8483 0.9355 38 1 0.5281 -9.2602 2.5483 39 1 -0.5040 -11.2374 1.4643 40 1 -2.9469 -11.2472 1.0372 41 1 -2.1311 -10.0083 0.0528 42 1 -4.1947 -9.1054 1.0900 43 1 -4.2175 -10.5811 3.0822 44 1 -4.3069 -8.8673 3.5556 45 1 -2.6803 -10.0960 4.9667 46 1 -0.6169 -10.9996 3.9296 47 1 -2.0627 -11.8260 3.3006 48 1 -0.7414 -8.5942 4.5935 49 1 -2.2770 -7.7075 4.4388 50 1 -3.1624 -7.1286 2.1747 51 1 -2.2571 -7.6031 0.7172 52 1 -1.0204 -3.9629 0.3566 53 1 -1.0212 -3.9635 2.1364 54 1 0.9973 -2.5228 2.1376 55 1 -0.3374 -1.7519 1.2477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325006.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:36 Heat of formation + Delta-G solvation = -69.681514 kcal Electronic energy + Delta-G solvation = -28383.392166 eV Core-core repulsion = 24995.117018 eV Total energy + Delta-G solvation = -3388.275148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.35958 -39.71111 -36.78134 -34.75078 -33.48647 -33.40908 -32.98489 -31.31201 -29.86623 -26.83147 -26.70747 -26.68041 -25.01512 -23.21011 -22.49477 -22.25065 -21.82579 -21.06150 -20.32435 -18.39520 -18.32856 -16.82474 -16.42453 -15.95090 -15.62039 -15.39943 -15.22695 -15.17721 -15.12126 -14.82209 -14.63346 -14.24562 -14.12547 -14.10077 -13.81110 -13.68931 -13.27368 -13.20483 -12.99084 -12.95115 -12.88792 -12.70945 -12.48088 -12.16041 -12.04917 -11.79369 -11.75518 -11.71079 -11.67844 -11.63195 -11.55937 -11.51844 -11.19783 -10.78435 -10.61907 -10.46294 -10.43701 -10.42119 -10.35325 -9.16816 -8.07378 -6.21590 1.38218 1.40219 1.51547 2.42879 3.17902 3.25235 3.63050 3.66352 3.69450 3.94923 4.12053 4.15463 4.26880 4.36280 4.39623 4.41108 4.41264 4.45191 4.50161 4.54802 4.55193 4.59381 4.65710 4.75671 4.78502 4.82221 4.84371 4.87536 4.89261 4.95056 4.99504 5.02434 5.12538 5.16086 5.19257 5.23075 5.24590 5.25368 5.27863 5.30538 5.33578 5.35968 5.41158 5.43578 5.47404 5.60360 5.61480 5.65573 5.68835 5.72786 5.77315 6.04439 6.20465 6.21109 6.42331 6.54898 6.91703 7.46410 8.96086 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.002582 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.356542 B =10840.854908 C =11078.222356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.101 4.101 11 C -0.091 4.091 12 C 0.103 3.897 13 N -0.675 5.675 14 C 0.070 3.930 15 C -0.042 4.042 16 C -0.088 4.088 17 C -0.088 4.088 18 C -0.104 4.104 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.083 4.083 22 C -0.104 4.104 23 C -0.102 4.102 24 C -0.105 4.105 25 C -0.130 4.130 26 C -0.097 4.097 27 H 0.259 0.741 28 H -0.009 1.009 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.339 0.661 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.051 0.949 51 H 0.059 0.941 52 H 0.045 0.955 53 H 0.047 0.953 54 H 0.024 0.976 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -23.946 7.214 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.007 4.007 13 N -0.305 5.305 14 C -0.060 4.060 15 C -0.043 4.043 16 C -0.126 4.126 17 C -0.106 4.106 18 C -0.142 4.142 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.169 4.169 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.009 0.991 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.077 0.923 52 H 0.064 0.936 53 H 0.066 0.934 54 H 0.043 0.957 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.269 -24.230 7.203 26.044 hybrid contribution -0.381 2.271 0.071 2.304 sum -6.649 -21.959 7.273 24.069 Atomic orbital electron populations 1.70034 1.07121 1.26835 1.51731 1.25746 0.95680 1.02341 0.95021 0.85611 0.79158 0.79963 0.77563 1.19186 1.20656 1.20672 1.21684 0.93011 0.92483 1.49967 0.93190 1.18619 0.93062 0.92355 0.93175 1.21496 0.97892 0.94661 0.99913 1.21370 0.98030 0.96470 0.96991 1.21381 0.94403 0.86620 0.98303 1.60711 1.28682 1.30310 1.10796 1.22026 0.98495 0.95589 0.89871 1.20391 0.94617 0.93667 0.95599 1.21379 0.96791 0.93460 1.00950 1.21094 0.96485 0.97015 0.95996 1.21506 0.95803 0.98506 0.98362 1.21033 0.97902 0.94562 0.96768 1.21530 0.96770 1.01325 0.94677 1.21044 0.95199 0.94755 0.99146 1.21522 0.99309 0.97890 0.95463 1.21549 0.99958 0.97227 0.95306 1.21577 0.95842 0.97277 0.99586 1.22126 0.98235 0.96734 0.99795 1.21333 0.98646 0.95897 0.97715 0.93209 0.99081 0.93570 0.93613 0.91099 0.93185 0.91607 0.84175 0.91655 0.96290 0.91913 0.92950 0.91165 0.91398 0.92516 0.91254 0.91237 0.92406 0.90672 0.92088 0.91379 0.91968 0.92575 0.93052 0.92275 0.93619 0.93392 0.95720 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 11.32 21.44 0.24 -53.77 16 2 C 0.01 0.58 5.30 84.65 0.45 1.03 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.53 -30.11 8.56 25.60 0.22 -29.89 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.36 2.10 -11.54 -0.02 2.34 16 10 C -0.10 -4.26 5.14 30.59 0.16 -4.10 16 11 C -0.09 -3.14 5.53 30.59 0.17 -2.97 16 12 C 0.10 3.37 2.47 44.91 0.11 3.49 16 13 N -0.67 -18.09 5.46 -491.59 -2.68 -20.78 16 14 C 0.07 1.66 4.44 86.30 0.38 2.05 16 15 C -0.04 -0.82 0.59 -52.18 -0.03 -0.86 16 16 C -0.09 -1.69 4.31 30.59 0.13 -1.56 16 17 C -0.09 -1.38 3.19 -10.79 -0.03 -1.42 16 18 C -0.10 -1.60 5.19 30.59 0.16 -1.44 16 19 C -0.08 -1.36 3.19 -10.79 -0.03 -1.39 16 20 C -0.11 -1.53 5.20 30.60 0.16 -1.37 16 21 C -0.08 -1.21 3.20 -10.77 -0.03 -1.25 16 22 C -0.10 -1.45 5.19 30.60 0.16 -1.30 16 23 C -0.10 -1.78 4.48 30.61 0.14 -1.65 16 24 C -0.11 -2.03 4.14 30.60 0.13 -1.91 16 25 C -0.13 -4.97 5.17 30.59 0.16 -4.81 16 26 C -0.10 -4.68 4.98 30.59 0.15 -4.53 16 27 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 34 H 0.34 9.00 6.51 -89.69 -0.58 8.42 16 35 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 36 H 0.02 0.49 7.44 -2.39 -0.02 0.47 16 37 H 0.06 1.39 7.60 -2.39 -0.02 1.37 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.06 1.23 6.57 -2.39 -0.02 1.22 16 52 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 53 H 0.05 1.72 7.45 -2.39 -0.02 1.70 16 54 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 55 H 0.05 3.00 6.07 -2.38 -0.01 2.99 16 Total: -1.00 -58.79 386.40 2.33 -56.45 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.23 Total: 23.13 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 2.51 Total: -51.53 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.44 Total: -74.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -58.79 2.33 -56.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325006.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.227 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds