Wall clock time and date at job start Tue Mar 31 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48507 * 109.47072 * 269.99936 * 3 2 1 5 5 H 1.48506 * 109.47422 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47452 * 149.99995 * 3 2 1 7 7 C 1.39855 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00498 * 195.44711 * 7 2 1 9 9 C 1.41118 * 119.99872 * 15.44815 * 7 2 1 10 10 C 1.40904 * 120.15583 * 27.32510 * 9 7 2 11 11 C 1.36314 * 119.83607 * 180.27309 * 10 9 7 12 12 C 1.39590 * 120.16289 * 359.45847 * 11 10 9 13 13 N 1.38885 * 119.84193 * 180.27739 * 12 11 10 14 14 C 1.39179 * 120.00234 * 327.23274 * 13 12 11 15 15 C 1.39563 * 120.86298 * 329.72640 * 14 13 12 16 16 C 1.37850 * 119.08581 * 179.75538 * 15 14 13 17 17 N 1.32020 * 120.86388 * 0.53214 * 16 15 14 18 18 C 1.32051 * 121.90138 * 359.74015 * 17 16 15 19 19 Br 1.89102 * 119.59119 * 179.97438 * 18 17 16 20 20 C 1.38053 * 120.82320 * 359.97438 * 18 17 16 21 21 C 1.39581 * 120.31303 * 0.29802 * 12 11 10 22 22 C 1.36328 * 120.15981 * 359.97438 * 21 12 11 23 23 H 0.97007 * 119.99918 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.07572 * 0.03387 * 10 9 7 25 25 H 1.08000 * 119.91937 * 179.73971 * 11 10 9 26 26 H 0.96999 * 119.99303 * 147.23542 * 13 12 11 27 27 H 1.08005 * 120.45522 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.57315 * 180.24743 * 16 15 14 29 29 H 1.08000 * 120.47314 * 180.02562 * 20 18 17 30 30 H 1.07993 * 119.92295 * 180.02562 * 21 12 11 31 31 H 1.08000 * 120.08137 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5407 1.4402 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0591 -1.2280 0.2497 9 6 1.3410 -2.4114 -0.3245 10 6 0.2148 -2.3882 -1.1710 11 6 -0.4282 -3.5507 -1.4761 12 6 0.0331 -4.7635 -0.9614 13 7 -0.6237 -5.9446 -1.2813 14 6 -2.0003 -5.9420 -1.4860 15 6 -2.8219 -5.0338 -0.8167 16 6 -4.1801 -5.0601 -1.0509 17 7 -4.7064 -5.9358 -1.8870 18 6 -3.9642 -6.8149 -2.5353 19 35 -4.7868 -8.0404 -3.7174 20 6 -2.5952 -6.8504 -2.3608 21 6 1.1512 -4.7946 -0.1263 22 6 1.8008 -3.6391 0.1918 23 1 -0.4850 0.8401 0.0004 24 1 -0.1402 -1.4512 -1.5738 25 1 -1.2941 -3.5340 -2.1215 26 1 -0.1229 -6.7714 -1.3620 27 1 -2.3990 -4.3178 -0.1275 28 1 -4.8228 -4.3582 -0.5403 29 1 -1.9936 -7.5714 -2.8942 30 1 1.5029 -5.7364 0.2681 31 1 2.6660 -3.6647 0.8377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175745572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:26 Heat of formation + Delta-G solvation = 57.217684 kcal Electronic energy + Delta-G solvation = -17390.744328 eV Core-core repulsion = 14489.662038 eV Total energy + Delta-G solvation = -2901.082291 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14038 -38.12781 -35.68555 -33.45738 -32.24228 -30.81158 -29.88273 -29.35394 -28.55959 -25.00219 -23.38688 -22.38077 -21.24319 -20.37450 -17.53293 -17.28285 -16.97606 -15.62691 -15.51101 -15.14203 -14.34374 -14.19555 -13.98120 -13.50728 -13.31758 -12.87487 -12.28622 -12.10569 -11.85311 -11.59993 -11.22907 -11.05870 -10.94634 -10.72038 -10.46243 -10.40217 -9.96202 -9.64677 -9.41273 -9.35972 -8.82493 -8.34015 -7.77094 -6.94955 -6.81082 -4.41167 1.14877 1.43851 1.49635 2.64088 2.86589 3.01032 3.03858 3.08845 3.76970 3.84493 3.92100 4.49445 4.71779 5.16739 5.27130 5.42688 5.50171 5.69945 5.92783 5.99201 6.06421 6.31269 6.55781 6.71304 6.82730 6.90537 7.06982 7.24299 7.39948 7.55327 7.86431 7.94157 8.00088 8.12665 8.20166 8.46404 8.73746 8.80455 10.06702 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.002866 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.884655 B = 9769.004017 C =10257.542630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.142 4.142 11 C -0.116 4.116 12 C 0.009 3.991 13 N -0.659 5.659 14 C 0.253 3.747 15 C -0.206 4.206 16 C 0.133 3.867 17 N -0.507 5.507 18 C 0.155 3.845 19 Br -0.028 7.028 20 C -0.214 4.214 21 C -0.108 4.108 22 C -0.206 4.206 23 H 0.282 0.718 24 H 0.121 0.879 25 H 0.091 0.909 26 H 0.400 0.600 27 H 0.146 0.854 28 H 0.160 0.840 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -10.817 -4.377 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.161 4.161 11 C -0.136 4.136 12 C -0.084 4.084 13 N -0.279 5.279 14 C 0.140 3.860 15 C -0.231 4.231 16 C -0.023 4.023 17 N -0.221 5.221 18 C -0.061 4.061 19 Br 0.056 6.944 20 C -0.242 4.242 21 C -0.129 4.129 22 C -0.227 4.227 23 H 0.093 0.907 24 H 0.138 0.862 25 H 0.109 0.891 26 H 0.235 0.765 27 H 0.164 0.836 28 H 0.178 0.822 29 H 0.154 0.846 30 H 0.110 0.890 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.701 -10.939 -4.885 14.242 hybrid contribution 1.598 0.754 0.436 1.820 sum -6.103 -10.185 -4.449 12.680 Atomic orbital electron populations 1.69823 1.07515 1.29448 1.35005 1.25915 0.94812 1.01401 0.92257 0.86273 0.80435 0.80433 0.79390 1.19226 1.20225 1.18593 1.19556 0.97383 0.90975 1.40765 0.90280 1.17654 0.91319 0.92153 0.88871 1.20939 0.98657 0.96427 1.00117 1.20322 1.00281 0.92216 1.00809 1.17143 0.99196 0.84839 1.07236 1.41571 1.02710 1.09844 1.73738 1.17939 0.84879 0.92931 0.90279 1.22150 0.94203 1.03811 1.02933 1.22469 0.92649 0.94281 0.92929 1.67397 1.39597 1.05424 1.09731 1.22205 0.90397 0.96141 0.97391 1.96691 1.83011 1.55479 1.59209 1.21442 0.94154 1.05665 1.02979 1.20069 0.97190 0.97355 0.98279 1.20622 1.03581 0.92610 1.05847 0.90689 0.86168 0.89079 0.76497 0.83588 0.82238 0.84556 0.89046 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 11.00 55.54 0.61 -18.77 16 2 C 0.07 1.76 5.16 -17.34 -0.09 1.67 16 3 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.39 9.03 -37.88 -0.34 -11.73 16 8 H 0.08 1.89 7.89 -52.48 -0.41 1.48 16 9 C 0.10 2.54 5.55 -106.79 -0.59 1.95 16 10 C -0.14 -3.41 8.61 -39.27 -0.34 -3.75 16 11 C -0.12 -2.51 7.96 -39.77 -0.32 -2.82 16 12 C 0.01 0.18 5.89 -83.66 -0.49 -0.31 16 13 N -0.66 -10.74 5.41 -8.14 -0.04 -10.79 16 14 C 0.25 4.07 5.91 -83.58 -0.49 3.57 16 15 C -0.21 -3.37 8.11 -39.23 -0.32 -3.69 16 16 C 0.13 2.00 11.17 -17.61 -0.20 1.81 16 17 N -0.51 -8.14 10.32 -11.74 -0.12 -8.26 16 18 C 0.16 2.35 7.16 -17.53 -0.13 2.23 16 19 Br -0.03 -0.35 33.86 -68.01 -2.30 -2.65 16 20 C -0.21 -3.12 9.77 -39.20 -0.38 -3.51 16 21 C -0.11 -2.19 9.89 -39.77 -0.39 -2.58 16 22 C -0.21 -4.64 9.74 -39.26 -0.38 -5.02 16 23 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 24 H 0.12 3.03 6.27 -52.49 -0.33 2.70 16 25 H 0.09 1.90 6.82 -52.49 -0.36 1.54 16 26 H 0.40 5.47 8.92 -40.82 -0.36 5.10 16 27 H 0.15 2.58 6.86 -52.48 -0.36 2.22 16 28 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -25.63 292.74 -9.59 -35.22 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.65 Total: 10.27 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -4.46 Total: -22.18 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.45 Total: -37.81 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.30 Total: -2.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.63 -9.59 -35.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175745572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.434 kcal (2) G-P(sol) polarization free energy of solvation -25.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds