Wall clock time and date at job start Tue Mar 31 2020 12:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48507 * 109.47233 * 265.20263 * 3 2 1 5 5 H 1.48497 * 109.47157 * 25.20176 * 3 2 1 6 6 H 1.48500 * 109.47202 * 145.20632 * 3 2 1 7 7 C 1.39931 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 328.36342 * 7 2 1 9 9 C 1.41021 * 119.99758 * 148.35696 * 7 2 1 10 10 C 1.40746 * 120.31235 * 333.02355 * 9 7 2 11 11 C 1.36433 * 119.95340 * 179.97438 * 10 9 7 12 12 C 1.38922 * 120.60050 * 359.97392 * 11 10 9 13 13 C 1.38138 * 120.62962 * 0.02632 * 12 11 10 14 14 C 1.38780 * 120.02644 * 359.97438 * 13 12 11 15 15 N 1.38756 * 120.29615 * 179.97438 * 14 13 12 16 16 C 1.39177 * 120.00197 * 352.08931 * 15 14 13 17 17 C 1.39556 * 120.86588 * 135.39962 * 16 15 14 18 18 C 1.37858 * 119.08724 * 180.02562 * 17 16 15 19 19 N 1.32017 * 120.86329 * 0.02562 * 18 17 16 20 20 C 1.32048 * 121.90121 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 119.58786 * 179.97438 * 20 19 18 22 22 C 1.38056 * 120.82605 * 359.71040 * 20 19 18 23 23 H 0.96997 * 120.00205 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.01957 * 359.95644 * 10 9 7 25 25 H 1.07994 * 119.69909 * 179.97438 * 11 10 9 26 26 H 1.07992 * 119.68526 * 180.02562 * 12 11 10 27 27 H 1.08003 * 119.98924 * 179.71825 * 13 12 11 28 28 H 0.97006 * 119.99889 * 172.08716 * 15 14 13 29 29 H 1.08008 * 120.45548 * 0.02562 * 17 16 15 30 30 H 1.08004 * 119.56580 * 179.97438 * 18 17 16 31 31 H 1.07993 * 120.47980 * 180.31205 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.5916 1.9879 -1.3952 5 1 1.3932 2.6798 0.5961 6 1 3.4859 1.4716 0.7989 7 6 2.0084 -1.2118 0.0005 8 1 1.5887 -2.0774 0.4915 9 6 3.2613 -1.3029 -0.6401 10 6 3.5723 -0.4510 -1.7165 11 6 4.7870 -0.5450 -2.3307 12 6 5.7253 -1.4761 -1.9035 13 6 5.4458 -2.3242 -0.8495 14 6 4.2184 -2.2511 -0.2059 15 7 3.9316 -3.1006 0.8530 16 6 4.8041 -4.1378 1.1691 17 6 5.1579 -4.3971 2.4940 18 6 6.0256 -5.4335 2.7654 19 7 6.5201 -6.1753 1.7918 20 6 6.2102 -5.9624 0.5259 21 35 6.9575 -7.0648 -0.8165 22 6 5.3432 -4.9484 0.1707 23 1 -0.4850 0.8400 -0.0004 24 1 2.8498 0.2763 -2.0562 25 1 5.0211 0.1103 -3.1565 26 1 6.6823 -1.5375 -2.4001 27 1 6.1812 -3.0473 -0.5288 28 1 3.1229 -2.9716 1.3730 29 1 4.7575 -3.7941 3.2956 30 1 6.3049 -5.6407 3.7879 31 1 5.0897 -4.7825 -0.8658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175750337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:29 Heat of formation + Delta-G solvation = 61.973273 kcal Electronic energy + Delta-G solvation = -17795.987497 eV Core-core repulsion = 14895.111424 eV Total energy + Delta-G solvation = -2900.876073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24299 -38.27742 -35.38521 -33.81160 -32.30856 -31.17249 -30.23516 -29.51260 -28.12335 -25.22084 -23.26061 -22.94686 -21.15516 -20.34838 -17.61185 -17.24383 -16.96204 -15.94857 -15.64131 -15.08620 -14.53959 -14.20987 -14.00400 -13.57230 -13.37549 -13.03589 -12.63206 -12.39738 -12.00365 -11.70720 -11.30813 -10.95322 -10.83648 -10.63839 -10.39516 -10.30275 -10.07195 -9.81877 -9.48313 -9.17804 -8.82975 -8.81547 -7.82625 -7.18065 -6.82675 -4.49359 1.06952 1.35650 1.48716 2.51440 2.66503 3.03541 3.10100 3.20351 3.79876 3.84414 3.89956 4.32859 4.64431 5.14293 5.19353 5.26133 5.35104 5.69321 5.82286 5.90154 6.04453 6.21273 6.27773 6.54954 6.58094 6.67701 7.00247 7.01379 7.26346 7.45838 7.76385 7.85615 7.90340 7.94656 8.18172 8.32064 8.55191 8.65619 9.83041 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.004037 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.642147 B = 6933.838137 C = 7570.619708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.096 3.904 3 Si 0.902 3.098 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.462 4.462 8 H 0.087 0.913 9 C 0.072 3.928 10 C -0.215 4.215 11 C -0.101 4.101 12 C -0.214 4.214 13 C -0.134 4.134 14 C 0.065 3.935 15 N -0.658 5.658 16 C 0.243 3.757 17 C -0.213 4.213 18 C 0.129 3.871 19 N -0.499 5.499 20 C 0.145 3.855 21 Br -0.022 7.022 22 C -0.178 4.178 23 H 0.287 0.713 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.415 0.585 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -7.979 2.038 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.126 4.126 3 Si 0.726 3.274 4 H -0.184 1.184 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.235 4.235 11 C -0.120 4.120 12 C -0.233 4.233 13 C -0.156 4.156 14 C -0.030 4.030 15 N -0.281 5.281 16 C 0.132 3.868 17 C -0.238 4.238 18 C -0.029 4.029 19 N -0.213 5.213 20 C -0.071 4.071 21 Br 0.062 6.938 22 C -0.205 4.205 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.254 0.746 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.389 -8.949 1.689 13.080 hybrid contribution -0.874 1.749 0.293 1.977 sum 8.514 -7.200 1.982 11.325 Atomic orbital electron populations 1.69835 1.08445 1.30736 1.31848 1.26089 0.94304 1.01835 0.90372 0.86518 0.80734 0.79860 0.80293 1.18403 1.21338 1.17562 1.19067 1.00036 0.97873 1.31964 0.89477 1.17287 0.91437 0.92187 0.92365 1.20717 0.98147 1.04965 0.99708 1.20329 0.94418 0.98182 0.99112 1.20172 0.99525 1.01689 1.01948 1.20441 0.94974 1.01465 0.98717 1.17697 0.94430 0.97926 0.92996 1.41611 1.24093 1.28139 1.34296 1.17884 0.89776 0.86938 0.92245 1.22129 1.02478 1.02509 0.96661 1.22429 0.92362 0.90263 0.97845 1.67396 1.25841 1.29055 0.98979 1.22356 0.97395 0.95096 0.92218 1.96715 1.83879 1.66806 1.46380 1.21993 1.01465 0.95004 1.02019 0.90218 0.87642 0.88909 0.88670 0.88168 0.74633 0.84305 0.82267 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.37 13.93 55.55 0.77 -18.60 16 2 C 0.10 2.32 5.17 -17.33 -0.09 2.23 16 3 Si 0.90 19.23 25.59 -169.99 -4.35 14.88 16 4 H -0.26 -5.43 6.25 56.52 0.35 -5.08 16 5 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.25 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.46 -11.30 8.82 -37.89 -0.33 -11.64 16 8 H 0.09 2.17 7.03 -52.49 -0.37 1.80 16 9 C 0.07 1.69 5.09 -106.63 -0.54 1.15 16 10 C -0.22 -4.94 7.54 -39.29 -0.30 -5.23 16 11 C -0.10 -2.12 9.97 -39.98 -0.40 -2.52 16 12 C -0.21 -4.32 10.03 -39.36 -0.40 -4.71 16 13 C -0.13 -2.75 8.19 -39.42 -0.32 -3.07 16 14 C 0.07 1.40 6.47 -83.26 -0.54 0.86 16 15 N -0.66 -12.31 5.37 -7.88 -0.04 -12.36 16 16 C 0.24 4.04 5.78 -83.58 -0.48 3.56 16 17 C -0.21 -2.98 10.06 -39.23 -0.39 -3.37 16 18 C 0.13 1.70 11.17 -17.61 -0.20 1.51 16 19 N -0.50 -7.69 10.32 -11.74 -0.12 -7.81 16 20 C 0.14 2.28 7.16 -17.53 -0.13 2.15 16 21 Br -0.02 -0.30 33.86 -68.01 -2.30 -2.60 16 22 C -0.18 -2.95 7.24 -39.20 -0.28 -3.23 16 23 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 24 H 0.11 2.43 5.13 -52.49 -0.27 2.16 16 25 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.10 1.92 5.56 -52.48 -0.29 1.63 16 28 H 0.41 7.55 7.17 -40.82 -0.29 7.26 16 29 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.15 2.53 7.06 -52.49 -0.37 2.16 16 LS Contribution 284.71 15.07 4.29 4.29 Total: -1.00 -25.61 284.71 -8.62 -34.23 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -2.47 Total: 10.29 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -4.40 Total: -22.32 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.61 Total: -38.77 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.35 Total: 14.88 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.30 Total: -2.60 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -25.61 -8.62 -34.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175750337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.206 kcal (2) G-P(sol) polarization free energy of solvation -25.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds