Wall clock time and date at job start Tue Mar 31 2020 12:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48507 * 109.47233 * 265.20263 * 3 2 1 5 5 H 1.48497 * 109.47157 * 25.20176 * 3 2 1 6 6 H 1.48500 * 109.47202 * 145.20632 * 3 2 1 7 7 C 1.39931 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 328.36342 * 7 2 1 9 9 C 1.41021 * 119.99758 * 148.35696 * 7 2 1 10 10 C 1.40746 * 120.31235 * 333.02355 * 9 7 2 11 11 C 1.36433 * 119.95340 * 179.97438 * 10 9 7 12 12 C 1.38922 * 120.60050 * 359.97392 * 11 10 9 13 13 C 1.38138 * 120.62962 * 0.02632 * 12 11 10 14 14 C 1.38780 * 120.02644 * 359.97438 * 13 12 11 15 15 N 1.38756 * 120.29615 * 179.97438 * 14 13 12 16 16 C 1.39177 * 120.00197 * 352.08931 * 15 14 13 17 17 C 1.39556 * 120.86588 * 135.39962 * 16 15 14 18 18 C 1.37858 * 119.08724 * 180.02562 * 17 16 15 19 19 N 1.32017 * 120.86329 * 0.02562 * 18 17 16 20 20 C 1.32048 * 121.90121 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 119.58786 * 179.97438 * 20 19 18 22 22 C 1.38056 * 120.82605 * 359.71040 * 20 19 18 23 23 H 0.96997 * 120.00205 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.01957 * 359.95644 * 10 9 7 25 25 H 1.07994 * 119.69909 * 179.97438 * 11 10 9 26 26 H 1.07992 * 119.68526 * 180.02562 * 12 11 10 27 27 H 1.08003 * 119.98924 * 179.71825 * 13 12 11 28 28 H 0.97006 * 119.99889 * 172.08716 * 15 14 13 29 29 H 1.08008 * 120.45548 * 0.02562 * 17 16 15 30 30 H 1.08004 * 119.56580 * 179.97438 * 18 17 16 31 31 H 1.07993 * 120.47980 * 180.31205 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.5916 1.9879 -1.3952 5 1 1.3932 2.6798 0.5961 6 1 3.4859 1.4716 0.7989 7 6 2.0084 -1.2118 0.0005 8 1 1.5887 -2.0774 0.4915 9 6 3.2613 -1.3029 -0.6401 10 6 3.5723 -0.4510 -1.7165 11 6 4.7870 -0.5450 -2.3307 12 6 5.7253 -1.4761 -1.9035 13 6 5.4458 -2.3242 -0.8495 14 6 4.2184 -2.2511 -0.2059 15 7 3.9316 -3.1006 0.8530 16 6 4.8041 -4.1378 1.1691 17 6 5.1579 -4.3971 2.4940 18 6 6.0256 -5.4335 2.7654 19 7 6.5201 -6.1753 1.7918 20 6 6.2102 -5.9624 0.5259 21 35 6.9575 -7.0648 -0.8165 22 6 5.3432 -4.9484 0.1707 23 1 -0.4850 0.8400 -0.0004 24 1 2.8498 0.2763 -2.0562 25 1 5.0211 0.1103 -3.1565 26 1 6.6823 -1.5375 -2.4001 27 1 6.1812 -3.0473 -0.5288 28 1 3.1229 -2.9716 1.3730 29 1 4.7575 -3.7941 3.2956 30 1 6.3049 -5.6407 3.7879 31 1 5.0897 -4.7825 -0.8658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175750337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:29 Heat of formation + Delta-G solvation = 48.444420 kcal Electronic energy + Delta-G solvation = -17796.574152 eV Core-core repulsion = 14895.111424 eV Total energy + Delta-G solvation = -2901.462728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52032 -39.82639 -36.83342 -35.55808 -33.47817 -32.70782 -31.77342 -30.71147 -29.64805 -26.93621 -24.47647 -24.34653 -22.73458 -21.90761 -19.35538 -18.56815 -18.45502 -17.32645 -16.92026 -16.67996 -15.92041 -15.68621 -15.38150 -14.95681 -14.75610 -14.61188 -14.26308 -13.99042 -13.64388 -13.19869 -12.82144 -12.51965 -12.31686 -12.08751 -11.78491 -11.70117 -11.50915 -11.46854 -10.92503 -10.68463 -10.27245 -9.97093 -9.54647 -8.95842 -8.39910 -6.28602 -0.11831 0.09608 0.31707 0.80619 1.03049 1.31510 1.42390 1.49356 2.13371 2.45804 2.55582 2.66702 3.51750 3.58222 3.92429 4.00559 4.17059 4.28872 4.44199 4.50200 4.63261 4.72390 4.88373 4.98036 5.08789 5.30271 5.30448 5.50395 5.62985 5.77548 6.06787 6.13999 6.31656 6.46613 6.73849 6.74549 6.87443 6.94470 8.10813 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.004037 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.642147 B = 6933.838137 C = 7570.619708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.067 3.933 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.067 0.933 9 C 0.046 3.954 10 C -0.228 4.228 11 C -0.113 4.113 12 C -0.200 4.200 13 C -0.145 4.145 14 C 0.073 3.927 15 N -0.665 5.665 16 C 0.222 3.778 17 C -0.202 4.202 18 C 0.136 3.864 19 N -0.507 5.507 20 C 0.136 3.864 21 Br -0.007 7.007 22 C -0.186 4.186 23 H 0.294 0.706 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.413 0.587 29 H 0.162 0.838 30 H 0.202 0.798 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.076 -8.407 2.577 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.151 4.151 3 Si 0.770 3.230 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.041 3.959 10 C -0.248 4.248 11 C -0.133 4.133 12 C -0.219 4.219 13 C -0.167 4.167 14 C -0.024 4.024 15 N -0.289 5.289 16 C 0.113 3.887 17 C -0.226 4.226 18 C -0.021 4.021 19 N -0.220 5.220 20 C -0.079 4.079 21 Br 0.077 6.923 22 C -0.212 4.212 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.252 0.748 29 H 0.179 0.821 30 H 0.219 0.781 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.690 -9.408 2.238 15.171 hybrid contribution -1.368 1.652 0.147 2.150 sum 10.321 -7.756 2.386 13.129 Atomic orbital electron populations 1.69852 1.09334 1.31659 1.34222 1.26602 0.94702 1.03753 0.90037 0.85824 0.79368 0.77609 0.80230 1.17918 1.19964 1.18760 1.19036 1.01128 0.97761 1.33715 0.91551 1.17460 0.91703 0.93636 0.93053 1.20831 0.99051 1.05034 0.99929 1.20621 0.93797 0.98985 0.99849 1.20611 1.00307 1.00071 1.00926 1.20663 0.94921 1.02096 0.99027 1.17878 0.94251 0.97257 0.92979 1.41561 1.24739 1.28726 1.33874 1.18146 0.90127 0.86814 0.93612 1.22429 1.01671 1.02476 0.95975 1.23123 0.90924 0.88909 0.99179 1.67512 1.25955 1.29446 0.99088 1.22517 0.97361 0.95158 0.92906 1.96720 1.83528 1.66172 1.45853 1.21922 1.02086 0.95720 1.01504 0.89536 0.88385 0.86229 0.85710 0.86793 0.74799 0.82066 0.78091 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.10 13.93 21.83 0.30 -41.80 16 2 C 0.07 3.34 5.17 85.25 0.44 3.78 16 3 Si 0.95 39.97 25.59 68.60 1.76 41.72 16 4 H -0.25 -10.41 6.25 99.48 0.62 -9.79 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.49 -24.80 8.82 23.36 0.21 -24.60 16 8 H 0.07 3.52 7.03 -2.91 -0.02 3.50 16 9 C 0.05 2.19 5.09 -21.17 -0.11 2.09 16 10 C -0.23 -10.42 7.54 22.46 0.17 -10.26 16 11 C -0.11 -4.54 9.97 22.01 0.22 -4.32 16 12 C -0.20 -7.57 10.03 22.41 0.22 -7.34 16 13 C -0.15 -5.72 8.19 22.38 0.18 -5.54 16 14 C 0.07 3.14 6.47 38.99 0.25 3.39 16 15 N -0.67 -24.87 5.37 -178.86 -0.96 -25.83 16 16 C 0.22 7.12 5.78 38.58 0.22 7.34 16 17 C -0.20 -5.09 10.06 22.50 0.23 -4.87 16 18 C 0.14 3.11 11.17 84.57 0.94 4.05 16 19 N -0.51 -14.17 10.32 -191.06 -1.97 -16.15 16 20 C 0.14 4.02 7.16 84.62 0.61 4.63 16 21 Br -0.01 -0.17 33.86 -20.37 -0.69 -0.86 16 22 C -0.19 -5.93 7.24 22.52 0.16 -5.77 16 23 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 24 H 0.10 4.54 5.13 -2.91 -0.01 4.52 16 25 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 27 H 0.11 4.15 5.56 -2.91 -0.02 4.14 16 28 H 0.41 15.44 7.17 -92.70 -0.66 14.78 16 29 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.14 4.59 7.06 -2.91 -0.02 4.57 16 Total: -1.00 -55.21 284.71 2.62 -52.59 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.44 Total: 27.73 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.75 Total: -37.41 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.63 Total: -83.77 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.76 Total: 41.72 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -55.21 2.62 -52.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175750337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.034 kcal (2) G-P(sol) polarization free energy of solvation -55.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds