Wall clock time and date at job start Tue Mar 31 2020 11:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86793 * 120.00230 * 2 1 4 4 H 1.48498 * 109.46986 * 269.99755 * 3 2 1 5 5 H 1.48494 * 109.47286 * 29.99750 * 3 2 1 6 6 H 1.48507 * 109.47048 * 149.99898 * 3 2 1 7 7 C 1.38883 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 359.97438 * 7 2 1 9 9 N 1.37161 * 120.00200 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00397 * 180.02562 * 9 7 2 11 11 O 1.21585 * 119.99430 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99775 * 180.27242 * 10 9 7 13 13 C 1.40003 * 119.99679 * 175.23615 * 12 10 9 14 14 C 1.38853 * 120.06195 * 34.69717 * 13 12 10 15 15 C 1.38115 * 119.95008 * 179.69846 * 14 13 12 16 16 C 1.38373 * 120.08116 * 0.57406 * 15 14 13 17 17 Br 1.89101 * 119.93665 * 179.74426 * 16 15 14 18 18 C 1.38345 * 120.12928 * 359.72291 * 16 15 14 19 19 C 1.38216 * 120.04573 * 359.97438 * 18 16 15 20 20 Cl 1.73609 * 120.03622 * 179.97438 * 19 18 16 21 21 H 0.97001 * 119.99924 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99908 * 359.97438 * 9 7 2 23 23 H 0.96994 * 120.00417 * 355.23856 * 12 10 9 24 24 H 1.08000 * 120.02546 * 359.97242 * 14 13 12 25 25 H 1.08005 * 119.96304 * 180.30011 * 15 14 13 26 26 H 1.08004 * 119.97366 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6176 0.0000 4 1 2.4963 2.0462 -1.4001 5 1 1.4463 2.6526 0.6999 6 1 3.5463 1.4400 0.7001 7 6 2.0091 -1.2028 0.0005 8 1 1.4690 -2.1381 0.0014 9 7 3.3807 -1.2029 0.0011 10 6 4.0546 -2.3702 0.0011 11 8 3.4465 -3.4231 0.0011 12 7 5.4023 -2.3701 0.0071 13 6 6.1018 -3.5787 0.1078 14 6 5.5966 -4.7266 -0.4881 15 6 6.2917 -5.9162 -0.3926 16 6 7.4849 -5.9681 0.3062 17 35 8.4296 -7.6008 0.4405 18 6 7.9882 -4.8279 0.9065 19 6 7.3001 -3.6331 0.8090 20 17 7.9317 -2.2025 1.5629 21 1 -0.4850 0.8401 -0.0004 22 1 3.8657 -0.3629 0.0007 23 1 5.8876 -1.5329 -0.0582 24 1 4.6629 -4.6882 -1.0296 25 1 5.9013 -6.8081 -0.8602 26 1 8.9196 -4.8714 1.4517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187339702.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:27 Heat of formation + Delta-G solvation = -18.422639 kcal Electronic energy + Delta-G solvation = -15944.755508 eV Core-core repulsion = 12902.127262 eV Total energy + Delta-G solvation = -3042.628245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.67654 -39.89018 -37.57996 -36.47336 -35.71935 -33.84319 -32.49189 -31.96956 -29.58904 -26.80489 -24.32080 -23.39828 -21.84668 -20.71303 -19.49337 -18.35507 -17.35376 -16.86344 -16.76848 -16.01530 -15.63450 -15.31876 -15.01345 -14.79425 -14.70232 -14.19043 -13.24470 -13.09229 -13.00946 -12.85961 -12.45000 -12.15565 -12.07526 -11.99324 -11.59809 -11.31845 -11.11033 -10.88514 -10.33823 -9.97697 -9.17456 -8.40142 -6.02395 -0.16378 0.05931 0.47147 1.02647 1.29526 1.35382 1.42298 1.77563 2.03736 2.22339 2.47382 3.16612 3.47329 3.62537 3.95011 4.09599 4.15667 4.52862 4.77971 4.98159 5.01891 5.29403 5.36675 5.69109 5.74685 6.14708 6.71443 6.81250 7.38173 7.85684 8.76485 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.003465 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.556232 B = 8079.585017 C = 8926.283940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.236 1.236 7 C -0.314 4.314 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.663 3.337 11 O -0.628 6.628 12 N -0.678 5.678 13 C 0.193 3.807 14 C -0.125 4.125 15 C -0.060 4.060 16 C -0.110 4.110 17 Br -0.028 7.028 18 C -0.054 4.054 19 C -0.072 4.072 20 Cl -0.048 7.048 21 H 0.279 0.721 22 H 0.389 0.611 23 H 0.417 0.583 24 H 0.136 0.864 25 H 0.156 0.844 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.114 -8.585 0.701 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.780 3.220 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.443 4.443 8 H 0.083 0.917 9 N -0.240 5.240 10 C 0.364 3.636 11 O -0.511 6.511 12 N -0.326 5.326 13 C 0.095 3.905 14 C -0.147 4.147 15 C -0.081 4.081 16 C -0.190 4.190 17 Br 0.057 6.943 18 C -0.075 4.075 19 C -0.103 4.103 20 Cl -0.019 7.019 21 H 0.089 0.911 22 H 0.224 0.776 23 H 0.255 0.745 24 H 0.153 0.847 25 H 0.174 0.826 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 22.684 -9.763 0.827 24.710 hybrid contribution -0.290 1.911 -0.015 1.933 sum 22.395 -7.852 0.812 23.745 Atomic orbital electron populations 1.69795 1.07803 1.29152 1.50560 1.25926 0.96415 1.02302 0.96422 0.85440 0.79370 0.77327 0.79876 1.18128 1.20004 1.15998 1.18841 0.79580 0.95346 1.50537 0.91668 1.41030 1.06084 1.05374 1.71466 1.15757 0.81101 0.84700 0.82033 1.90768 1.68049 1.31378 1.60884 1.42421 1.04441 1.08501 1.77260 1.17545 0.90900 0.86971 0.95113 1.21343 1.01068 0.91738 1.00525 1.21259 0.92270 0.98237 0.96286 1.21660 0.98260 0.93036 1.06077 1.96714 1.74110 1.25718 1.97751 1.20958 1.00218 0.88390 0.97917 1.20609 0.96983 0.90326 1.02359 1.98366 1.85985 1.37260 1.80285 0.91116 0.77559 0.74534 0.84659 0.82639 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 13.96 21.65 0.30 -54.68 15 2 C -0.01 -0.64 5.50 84.90 0.47 -0.17 15 3 Si 0.96 38.07 27.74 68.60 1.90 39.97 15 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.24 -7.98 6.52 99.48 0.65 -7.33 15 7 C -0.31 -17.79 10.16 84.01 0.85 -16.93 15 8 H 0.07 4.36 7.39 -2.91 -0.02 4.34 15 9 N -0.60 -27.45 5.10 -320.72 -1.63 -29.08 15 10 C 0.66 29.52 8.36 179.05 1.50 31.02 15 11 O -0.63 -33.08 13.33 -3.98 -0.05 -33.13 15 12 N -0.68 -22.63 5.05 -317.08 -1.60 -24.23 15 13 C 0.19 5.98 6.31 38.15 0.24 6.22 15 14 C -0.12 -3.95 8.70 22.39 0.19 -3.75 15 15 C -0.06 -1.50 9.78 22.27 0.22 -1.28 15 16 C -0.11 -2.41 6.22 22.33 0.14 -2.27 15 17 Br -0.03 -0.51 33.70 -20.37 -0.69 -1.19 15 18 C -0.05 -1.15 9.56 22.29 0.21 -0.94 15 19 C -0.07 -1.80 6.34 22.43 0.14 -1.66 15 20 Cl -0.05 -1.05 27.96 -2.72 -0.08 -1.13 15 21 H 0.28 15.10 8.31 -92.71 -0.77 14.32 15 22 H 0.39 14.96 5.78 -92.71 -0.54 14.42 15 23 H 0.42 11.22 8.10 -92.71 -0.75 10.47 15 24 H 0.14 5.09 6.20 -2.91 -0.02 5.07 15 25 H 0.16 3.24 8.06 -2.91 -0.02 3.21 15 26 H 0.17 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -67.25 270.37 2.04 -65.21 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.08 Total: 28.04 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 3.97 Total: 10.23 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -2.93 Total: -108.00 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.05 Total: -33.13 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.19 kcal Total: -67.25 2.04 -65.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187339702.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.789 kcal (2) G-P(sol) polarization free energy of solvation -67.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds