Wall clock time and date at job start Tue Mar 31 2020 11:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47187 * 173.69287 * 3 2 1 5 5 C 1.53002 * 109.46821 * 293.96421 * 4 3 2 6 6 C 1.53000 * 109.46966 * 293.69345 * 3 2 1 7 7 N 1.46899 * 109.47407 * 66.73229 * 6 3 2 8 8 C 1.46903 * 111.00035 * 199.80956 * 7 6 3 9 9 C 1.50705 * 109.46925 * 63.02264 * 8 7 6 10 10 H 1.08002 * 120.00291 * 5.11279 * 9 8 7 11 11 C 1.37882 * 119.99761 * 185.11911 * 9 8 7 12 12 N 1.31517 * 119.99633 * 354.91041 * 11 9 8 13 13 Si 1.86799 * 119.99879 * 174.91197 * 11 9 8 14 14 H 1.48497 * 109.47095 * 94.99497 * 13 11 9 15 15 H 1.48500 * 109.46820 * 214.99543 * 13 11 9 16 16 H 1.48496 * 109.47135 * 334.99464 * 13 11 9 17 17 C 1.46898 * 111.00081 * 75.85677 * 7 6 3 18 18 C 1.52999 * 109.46867 * 190.00224 * 17 7 6 19 19 C 1.53000 * 109.47120 * 179.97438 * 18 17 7 20 20 C 1.50697 * 109.47347 * 180.02562 * 19 18 17 21 21 C 1.38265 * 119.99950 * 270.21252 * 20 19 18 22 22 C 1.38209 * 120.00080 * 180.25255 * 21 20 19 23 23 C 1.38255 * 120.00053 * 359.51251 * 22 21 20 24 24 C 1.38211 * 120.00025 * 0.27756 * 23 22 21 25 25 C 1.50698 * 120.00472 * 179.97438 * 24 23 22 26 26 C 1.38211 * 120.00142 * 90.00066 * 20 19 18 27 27 H 1.09007 * 109.47424 * 188.20726 * 1 2 3 28 28 H 1.08997 * 109.47513 * 308.20891 * 1 2 3 29 29 H 1.09005 * 109.47135 * 68.20810 * 1 2 3 30 30 H 1.09006 * 109.47024 * 240.00119 * 2 1 3 31 31 H 1.08999 * 109.46959 * 120.00537 * 2 1 3 32 32 H 1.09000 * 109.46846 * 53.68603 * 3 2 1 33 33 H 1.08999 * 109.47484 * 53.96631 * 4 3 2 34 34 H 1.09001 * 109.47061 * 173.96535 * 4 3 2 35 35 H 1.08993 * 109.47494 * 65.49603 * 5 4 3 36 36 H 1.08998 * 109.46581 * 185.49196 * 5 4 3 37 37 H 1.09004 * 109.47445 * 305.48895 * 5 4 3 38 38 H 1.09005 * 109.47133 * 306.72590 * 6 3 2 39 39 H 1.09000 * 109.47057 * 186.73076 * 6 3 2 40 40 H 1.08999 * 109.47135 * 183.02316 * 8 7 6 41 41 H 1.08994 * 109.47119 * 303.02413 * 8 7 6 42 42 H 0.97004 * 119.99220 * 180.02562 * 12 11 9 43 43 H 1.08995 * 109.47260 * 69.99909 * 17 7 6 44 44 H 1.09000 * 109.46968 * 309.99708 * 17 7 6 45 45 H 1.09002 * 109.47173 * 60.00056 * 18 17 7 46 46 H 1.09001 * 109.47428 * 299.99553 * 18 17 7 47 47 H 1.09007 * 109.47274 * 59.99907 * 19 18 17 48 48 H 1.09005 * 109.47456 * 299.99876 * 19 18 17 49 49 H 1.08000 * 119.99742 * 0.04259 * 21 20 19 50 50 H 1.07994 * 120.00167 * 179.78887 * 22 21 20 51 51 H 1.08002 * 120.00468 * 180.25685 * 23 22 21 52 52 H 1.08996 * 109.47030 * 89.99628 * 25 24 23 53 53 H 1.09000 * 109.47539 * 209.99742 * 25 24 23 54 54 H 1.09006 * 109.46684 * 329.99907 * 25 24 23 55 55 H 1.07994 * 119.99901 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5617 1.4453 0.1585 5 6 3.9313 0.9091 1.5430 6 6 1.6635 2.1165 -1.3209 7 7 0.2035 2.2587 -1.3994 8 6 -0.2326 2.4519 -2.7889 9 6 0.1163 1.2302 -3.5993 10 1 0.5369 0.3620 -3.1138 11 6 -0.1014 1.2209 -4.9608 12 7 -0.7048 2.2375 -5.5372 13 14 0.4608 -0.2355 -5.9866 14 1 -0.6676 -1.1857 -6.1573 15 1 0.9118 0.2419 -7.3185 16 1 1.5850 -0.9204 -5.2995 17 6 -0.2653 3.3563 -0.5431 18 6 -1.7922 3.3172 -0.4541 19 6 -2.2805 4.4600 0.4384 20 6 -3.7844 4.4211 0.5266 21 6 -4.5490 5.1152 -0.3927 22 6 -5.9282 5.0838 -0.3087 23 6 -6.5435 4.3501 0.6886 24 6 -5.7792 3.6527 1.6050 25 6 -6.4498 2.8534 2.6924 26 6 -4.3994 3.6880 1.5239 27 1 -0.3634 -1.0172 0.1467 28 1 -0.3634 0.6356 0.8075 29 1 -0.3634 0.3815 -0.9543 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5873 1.9878 0.8281 33 1 4.0081 0.8115 -0.6077 34 1 3.9363 2.4634 0.0513 35 1 3.6435 -0.1397 1.6151 36 1 5.0069 1.0018 1.6932 37 1 3.4069 1.4831 2.3069 38 1 2.0145 1.5063 -2.1532 39 1 2.1277 3.1014 -1.3715 40 1 -1.3111 2.6080 -2.8128 41 1 0.2699 3.3228 -3.2097 42 1 -0.8582 2.2307 -6.4950 43 1 0.0496 4.3091 -0.9686 44 1 0.1597 3.2458 0.4545 45 1 -2.1070 2.3644 -0.0284 46 1 -2.2173 3.4277 -1.4516 47 1 -1.9656 5.4131 0.0132 48 1 -1.8554 4.3491 1.4360 49 1 -4.0685 5.6847 -1.1745 50 1 -6.5254 5.6288 -1.0247 51 1 -7.6213 4.3221 0.7518 52 1 -6.6262 1.8371 2.3401 53 1 -5.8072 2.8263 3.5724 54 1 -7.4010 3.3185 2.9512 55 1 -3.8022 3.1434 2.2401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191367582.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:57 Heat of formation + Delta-G solvation = -20.684284 kcal Electronic energy + Delta-G solvation = -27337.261639 eV Core-core repulsion = 23951.111170 eV Total energy + Delta-G solvation = -3386.150469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.40270 -39.61519 -36.90125 -35.44608 -34.39279 -33.19742 -32.28264 -31.30569 -29.73699 -28.37620 -27.67498 -26.15214 -24.87610 -23.60615 -23.23401 -22.73108 -21.38206 -21.14763 -20.52312 -18.57152 -17.35203 -16.83442 -16.53348 -16.40138 -16.08709 -15.74564 -15.53955 -15.27660 -15.08576 -14.67340 -14.42576 -14.34125 -14.07696 -13.86208 -13.79201 -13.64801 -13.31567 -13.25561 -13.07813 -12.90802 -12.76840 -12.68067 -12.63677 -12.49421 -12.37039 -12.26728 -11.99726 -11.95125 -11.85977 -11.70575 -11.59427 -11.44998 -11.38187 -11.12413 -11.04139 -10.92668 -10.50804 -9.64684 -9.43058 -8.69253 -8.17342 -6.24199 0.47725 0.51916 1.39941 1.40131 1.51840 2.41070 2.85284 3.15834 3.32689 3.83672 3.92610 3.98667 4.07308 4.11775 4.16151 4.26052 4.28700 4.42801 4.49430 4.52152 4.55384 4.60216 4.63932 4.73614 4.75725 4.79598 4.80973 4.86148 4.87952 4.90724 4.95812 4.97775 5.02325 5.11617 5.17094 5.18696 5.21083 5.25823 5.32684 5.33284 5.36905 5.39813 5.43568 5.46888 5.50118 5.58513 5.60696 5.71480 5.72434 5.73317 5.79545 6.13772 6.16633 6.18640 6.43798 6.75235 6.94093 7.44496 8.93857 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003787 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.428402 B = 7391.165066 C = 9459.582706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.071 4.071 4 C -0.119 4.119 5 C -0.144 4.144 6 C 0.067 3.933 7 N -0.520 5.520 8 C 0.207 3.793 9 C -0.511 4.511 10 H 0.065 0.935 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.958 3.042 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.263 1.263 17 C 0.058 3.942 18 C -0.094 4.094 19 C -0.070 4.070 20 C -0.083 4.083 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.095 4.095 25 C -0.111 4.111 26 C -0.130 4.130 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.013 0.987 40 H 0.008 0.992 41 H -0.048 1.048 42 H 0.261 0.739 43 H 0.010 0.990 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.135 0.865 51 H 0.140 0.860 52 H 0.073 0.927 53 H 0.074 0.926 54 H 0.078 0.922 55 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 2.249 18.236 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.090 4.090 4 C -0.157 4.157 5 C -0.201 4.201 6 C -0.061 4.061 7 N -0.243 5.243 8 C 0.081 3.919 9 C -0.550 4.550 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.576 5.576 13 Si 0.783 3.217 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.070 4.070 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.083 4.083 21 C -0.163 4.163 22 C -0.142 4.142 23 C -0.155 4.155 24 C -0.095 4.095 25 C -0.167 4.167 26 C -0.148 4.148 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.026 0.974 41 H -0.030 1.030 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.134 0.866 50 H 0.153 0.847 51 H 0.158 0.842 52 H 0.092 0.908 53 H 0.093 0.907 54 H 0.097 0.903 55 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.854 1.877 18.242 18.739 hybrid contribution 0.478 0.447 -1.840 1.953 sum -3.376 2.324 16.402 16.906 Atomic orbital electron populations 1.21950 0.95875 0.98767 1.04033 1.21356 0.96345 0.95545 1.00272 1.21172 0.95288 0.96448 0.96042 1.21530 0.94655 1.01083 0.98410 1.21746 1.01340 1.01248 0.95761 1.22088 0.87803 0.97704 0.98530 1.62263 1.11322 1.41525 1.09205 1.19386 0.94179 0.93911 0.84419 1.21471 1.40569 1.00724 0.92221 0.91676 1.25823 0.95409 0.98878 0.99369 1.70107 1.43402 1.33029 1.11035 0.85533 0.78846 0.79362 0.77915 1.20221 1.21028 1.18753 1.22133 0.95512 0.91534 0.97803 1.21394 0.94644 0.98537 0.98660 1.20532 0.90691 0.98589 1.00968 1.20037 0.95975 0.96949 0.95337 1.21246 0.94744 1.01106 0.99236 1.21375 0.94485 0.99484 0.98839 1.21304 1.00667 0.98126 0.95419 1.20287 0.93638 0.97930 0.97662 1.20821 1.00876 0.99199 0.95842 1.21156 0.94650 0.99799 0.99163 0.95268 0.93523 0.90444 0.94479 0.91492 0.90992 0.92762 0.92274 0.92439 0.92048 0.92355 0.92467 0.96908 0.97368 1.03023 0.93006 0.97175 0.89517 0.91822 0.94776 0.91336 0.89265 0.86649 0.84715 0.84192 0.90830 0.90695 0.90287 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 8.96 71.98 0.65 -4.35 16 2 C -0.10 -2.97 5.29 30.59 0.16 -2.81 16 3 C -0.07 -2.08 2.03 -10.80 -0.02 -2.10 16 4 C -0.12 -2.95 5.39 30.59 0.16 -2.78 16 5 C -0.14 -2.81 9.56 71.98 0.69 -2.13 16 6 C 0.07 2.55 4.18 86.30 0.36 2.91 16 7 N -0.52 -21.45 1.14 -900.79 -1.03 -22.48 16 8 C 0.21 10.96 4.57 85.56 0.39 11.35 16 9 C -0.51 -28.70 7.82 25.60 0.20 -28.50 16 10 H 0.07 3.59 7.11 -2.91 -0.02 3.57 16 11 C 0.00 0.17 5.45 84.66 0.46 0.63 16 12 N -0.93 -56.96 13.29 21.45 0.29 -56.67 16 13 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 C 0.06 2.02 4.78 86.30 0.41 2.43 16 18 C -0.09 -3.17 5.13 30.59 0.16 -3.01 16 19 C -0.07 -1.86 5.34 29.85 0.16 -1.70 16 20 C -0.08 -2.27 5.13 -19.87 -0.10 -2.37 16 21 C -0.15 -4.05 9.70 22.27 0.22 -3.83 16 22 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 23 C -0.14 -3.03 9.70 22.27 0.22 -2.82 16 24 C -0.10 -2.11 5.88 -19.86 -0.12 -2.22 16 25 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 26 C -0.13 -3.18 9.36 22.27 0.21 -2.97 16 27 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 1.43 8.11 -2.39 -0.02 1.42 16 29 H 0.08 3.22 5.31 -2.38 -0.01 3.20 16 30 H 0.04 1.25 8.13 -2.38 -0.02 1.23 16 31 H 0.07 1.71 6.45 -2.39 -0.02 1.69 16 32 H 0.07 1.99 6.60 -2.39 -0.02 1.98 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.06 1.11 6.73 -2.39 -0.02 1.09 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.06 2.52 6.42 -2.38 -0.02 2.50 16 39 H 0.01 0.49 7.99 -2.39 -0.02 0.47 16 40 H 0.01 0.48 6.18 -2.39 -0.01 0.46 16 41 H -0.05 -2.83 8.14 -2.39 -0.02 -2.85 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 43 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 44 H 0.09 2.54 6.56 -2.39 -0.02 2.52 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.03 1.38 6.42 -2.39 -0.02 1.37 16 47 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 48 H 0.09 1.98 8.08 -2.38 -0.02 1.96 16 49 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 50 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 51 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 52 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 54 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 55 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -64.09 421.79 7.23 -56.87 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.80 Total: 23.51 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 5.14 Total: -48.09 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -0.74 Total: -79.15 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.09 7.23 -56.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191367582.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.183 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds