Wall clock time and date at job start Tue Mar 31 2020 11:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47146 * 239.99951 * 3 2 1 5 5 H 1.48506 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46965 * 120.00071 * 3 2 1 7 7 C 1.37876 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00381 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40105 * 66.45788 * 9 7 2 11 11 O 1.42100 * 106.40048 * 293.54089 * 9 7 2 12 12 N 1.65594 * 107.22105 * 179.97438 * 9 7 2 13 13 C 1.38007 * 120.00153 * 64.99806 * 12 9 7 14 14 N 1.28900 * 124.82573 * 179.97438 * 13 12 9 15 15 C 1.34818 * 117.88162 * 179.97438 * 14 13 12 16 16 C 1.41125 * 128.72363 * 179.97438 * 15 14 13 17 17 C 1.37197 * 120.45711 * 180.02562 * 16 15 14 18 18 C 1.38703 * 120.60638 * 359.97438 * 17 16 15 19 19 C 1.37828 * 119.96636 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.91016 * 179.97438 * 19 18 17 21 21 C 1.39352 * 120.17619 * 0.26211 * 19 18 17 22 22 S 1.75803 * 124.82032 * 0.02562 * 13 12 9 23 23 H 0.96997 * 120.00311 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00380 * 245.00149 * 12 9 7 25 25 H 1.07992 * 119.77055 * 0.02562 * 16 15 14 26 26 H 1.07999 * 119.68882 * 179.97438 * 17 16 15 27 27 H 1.08006 * 120.01641 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4519 -2.7956 1.2494 12 7 2.2482 -3.9354 -0.0019 13 6 3.0885 -4.0993 1.0805 14 7 3.9943 -5.0112 1.1778 15 6 4.7390 -5.0428 2.3012 16 6 5.7798 -5.9313 2.6457 17 6 6.4304 -5.8079 3.8474 18 6 6.0770 -4.8090 4.7424 19 6 5.0635 -3.9296 4.4276 20 17 4.6219 -2.6803 5.5492 21 6 4.3883 -4.0443 3.2140 22 16 3.0747 -3.0946 2.5231 23 1 -0.4850 0.8400 0.0004 24 1 2.3165 -4.5322 -0.7636 25 1 6.0663 -6.7138 1.9588 26 1 7.2249 -6.4950 4.0985 27 1 6.5957 -4.7204 5.6856 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935633.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:57 Heat of formation + Delta-G solvation = -38.435012 kcal Electronic energy + Delta-G solvation = -19384.943640 eV Core-core repulsion = 16000.671856 eV Total energy + Delta-G solvation = -3384.271784 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.969 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11770 -37.51473 -36.33955 -35.72437 -34.48883 -34.16624 -33.31425 -30.75245 -29.08195 -26.44146 -24.33206 -22.80491 -21.52101 -19.84339 -18.66685 -17.62742 -17.57477 -16.66195 -15.86221 -15.36497 -15.08791 -14.96833 -14.75042 -14.23803 -14.11164 -13.94357 -13.10789 -12.63017 -12.24100 -12.08485 -11.69631 -11.58957 -11.32802 -11.24179 -11.09726 -10.89170 -10.75379 -10.73948 -10.53775 -10.42300 -9.73786 -9.50775 -9.43072 -9.16952 -8.03076 -7.91576 -6.94357 -5.61839 0.57761 1.00963 1.12678 1.58035 1.74091 2.18827 2.40574 2.99808 3.03902 3.09255 3.64627 3.73184 3.99691 4.42970 4.50089 4.78337 4.87711 5.16887 5.19628 5.27507 5.62115 5.76474 5.92274 6.04604 6.12347 6.23438 6.54238 7.07888 7.14078 7.67011 7.78889 8.63342 10.00514 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.005459 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.718043 B = 5128.121758 C = 6097.852898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.138 3.862 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.258 1.258 7 C -1.012 5.012 8 H 0.110 0.890 9 S 2.672 3.328 10 O -0.973 6.973 11 O -0.970 6.970 12 N -1.010 6.010 13 C 0.373 3.627 14 N -0.532 5.532 15 C 0.133 3.867 16 C -0.077 4.077 17 C -0.096 4.096 18 C -0.115 4.115 19 C 0.023 3.977 20 Cl -0.062 7.062 21 C -0.219 4.219 22 S 0.184 5.816 23 H 0.297 0.703 24 H 0.427 0.573 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.589 -6.922 7.613 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.082 4.082 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.183 1.183 7 C -1.147 5.147 8 H 0.128 0.872 9 S 2.773 3.227 10 O -0.963 6.963 11 O -0.960 6.960 12 N -0.755 5.755 13 C -0.004 4.004 14 N -0.256 5.256 15 C 0.010 3.990 16 C -0.099 4.099 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.009 4.009 20 Cl -0.033 7.033 21 C -0.339 4.339 22 S 0.435 5.565 23 H 0.107 0.893 24 H 0.264 0.736 25 H 0.154 0.846 26 H 0.157 0.843 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.678 -6.241 7.567 13.779 hybrid contribution 1.448 0.375 -0.299 1.525 sum 11.126 -5.866 7.268 14.526 Atomic orbital electron populations 1.69852 1.06819 1.31542 1.38417 1.24714 0.94544 1.00849 0.88062 0.86106 0.79936 0.78889 0.80313 1.18541 1.19825 1.18254 1.30195 1.06240 1.09952 1.68323 0.87177 1.02199 0.72543 0.73786 0.74148 1.93451 1.71311 1.86728 1.44818 1.93457 1.71069 1.86690 1.44789 1.54359 1.48854 1.49865 1.22386 1.23545 0.91319 0.93013 0.92515 1.66496 1.10034 1.24935 1.24183 1.18770 0.96913 0.95520 0.87785 1.20666 0.93895 0.98165 0.97145 1.20779 0.99891 0.98035 0.93038 1.20889 0.96845 0.95081 1.00923 1.19907 0.97648 0.93597 0.89735 1.98386 1.92226 1.51869 1.60867 1.23909 1.05551 1.04387 1.00099 1.86634 1.30403 1.29916 1.09498 0.89271 0.73633 0.84563 0.84280 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.92 13.19 55.43 0.73 -22.19 15 2 C 0.14 3.59 5.46 -17.82 -0.10 3.50 15 3 Si 0.92 19.44 29.54 -169.99 -5.02 14.41 15 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 7 C -1.01 -25.90 8.97 30.60 0.27 -25.63 15 8 H 0.11 2.59 7.81 -52.49 -0.41 2.18 15 9 S 2.67 66.90 4.60 -107.50 -0.50 66.40 15 10 O -0.97 -26.60 18.02 -57.17 -1.03 -27.63 15 11 O -0.97 -26.07 16.37 -57.17 -0.94 -27.01 15 12 N -1.01 -20.42 5.83 30.47 0.18 -20.24 15 13 C 0.37 7.49 8.19 -88.90 -0.73 6.76 15 14 N -0.53 -9.90 10.61 -11.16 -0.12 -10.02 15 15 C 0.13 2.22 6.94 -84.89 -0.59 1.63 15 16 C -0.08 -0.97 10.10 -38.87 -0.39 -1.36 15 17 C -0.10 -0.96 9.99 -39.79 -0.40 -1.35 15 18 C -0.12 -1.27 9.82 -39.56 -0.39 -1.66 15 19 C 0.02 0.33 6.33 -39.32 -0.25 0.08 15 20 Cl -0.06 -0.87 28.77 -51.86 -1.49 -2.36 15 21 C -0.22 -3.73 6.38 -38.60 -0.25 -3.98 15 22 S 0.18 3.68 20.35 -107.50 -2.19 1.50 15 23 H 0.30 7.30 8.31 -40.82 -0.34 6.96 15 24 H 0.43 7.27 8.95 -34.47 -0.31 6.96 15 25 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.14 0.87 8.06 -52.49 -0.42 0.45 15 27 H 0.14 1.14 8.06 -52.48 -0.42 0.72 15 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -31.46 290.02 -9.94 -41.39 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -1.12 Total: 3.39 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.81 Total: -22.01 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.79 Total: -52.45 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.97 Total: -54.64 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 70.58 SS G_CDS: -2.68 Total: 67.90 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.49 Total: -2.36 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.46 -9.94 -41.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935633.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.958 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds