Wall clock time and date at job start Tue Mar 31 2020 12:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21288 * 120.00413 * 2 1 4 4 N 1.34785 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.39964 * 120.00167 * 175.43910 * 4 2 1 6 6 C 1.38921 * 120.02059 * 35.37843 * 5 4 2 7 7 C 1.38169 * 120.08559 * 180.02562 * 6 5 4 8 8 C 1.38247 * 120.12988 * 0.02562 * 7 6 5 9 9 Cl 1.73602 * 119.97875 * 179.97438 * 8 7 6 10 10 C 1.39026 * 120.04469 * 359.97438 * 8 7 6 11 11 N 1.39742 * 120.04451 * 179.97438 * 10 8 7 12 12 S 1.65599 * 120.00248 * 148.37809 * 11 10 8 13 13 O 1.42098 * 106.40147 * 314.45650 * 12 11 10 14 14 O 1.42101 * 106.40373 * 181.53455 * 12 11 10 15 15 C 1.76201 * 107.21809 * 67.99530 * 12 11 10 16 16 H 1.08006 * 119.99980 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00050 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00076 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47158 * 89.99861 * 19 17 15 21 21 H 1.48500 * 109.47117 * 209.99706 * 19 17 15 22 22 H 1.48501 * 109.47253 * 330.00196 * 19 17 15 23 23 C 1.38732 * 120.02386 * 215.65824 * 5 4 2 24 24 H 1.08991 * 109.47203 * 240.00107 * 1 2 3 25 25 H 1.09000 * 109.46702 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46782 * 119.99499 * 1 2 3 27 27 H 0.96995 * 119.99555 * 355.43959 * 4 2 1 28 28 H 1.08008 * 119.96167 * 0.02562 * 6 5 4 29 29 H 1.07994 * 119.93709 * 179.97438 * 7 6 5 30 30 H 0.96995 * 119.99961 * 328.38123 * 11 10 8 31 31 H 0.96999 * 120.00105 * 179.97438 * 18 17 15 32 32 H 1.07997 * 120.06797 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5772 -1.1693 -0.0959 6 6 4.3173 -0.1624 0.5110 7 6 5.6957 -0.1628 0.4163 8 6 6.3429 -1.1645 -0.2829 9 17 8.0750 -1.1608 -0.4000 10 6 5.6076 -2.1748 -0.8924 11 7 6.2618 -3.1871 -1.5996 12 16 5.6164 -4.7112 -1.6513 13 8 5.2269 -5.0274 -0.3218 14 8 6.5220 -5.5051 -2.4056 15 6 4.1317 -4.6171 -2.5956 16 1 3.8140 -3.6715 -3.0094 17 6 3.3751 -5.7505 -2.8054 18 7 3.7618 -6.9019 -2.3012 19 14 1.8008 -5.6505 -3.8059 20 1 2.1085 -5.8919 -5.2385 21 1 0.8428 -6.6785 -3.3254 22 1 1.1995 -4.3018 -3.6493 23 6 4.2228 -2.1737 -0.8024 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6981 -2.0059 0.0677 28 1 3.8145 0.6218 1.0577 29 1 6.2686 0.6213 0.8887 30 1 7.0940 -2.9970 -2.0602 31 1 3.2293 -7.6992 -2.4484 32 1 3.6490 -2.9551 -1.2784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:59 Heat of formation + Delta-G solvation = -135.678674 kcal Electronic energy + Delta-G solvation = -22389.227444 eV Core-core repulsion = 18693.819082 eV Total energy + Delta-G solvation = -3695.408362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60121 -39.97475 -37.60606 -37.47223 -36.51125 -36.30121 -35.28718 -35.11414 -31.73332 -30.50468 -29.11229 -28.37084 -24.13343 -23.86659 -21.60247 -20.98204 -19.75029 -19.38806 -18.40827 -17.96902 -17.65741 -17.26289 -16.77583 -16.46776 -16.10095 -15.76928 -15.53907 -14.91903 -14.78375 -14.69142 -14.02746 -13.74612 -13.62722 -13.27791 -13.16183 -13.05688 -12.97228 -12.83839 -12.64811 -12.56642 -12.44092 -12.26167 -12.23091 -11.86577 -11.26690 -11.12232 -10.96524 -10.85043 -9.58219 -9.01763 -8.78899 -7.55374 -0.02886 0.05853 0.29719 1.11233 1.35775 1.38001 1.53813 1.55078 2.03936 2.19164 2.54523 2.59114 2.69017 3.55661 3.71428 3.83338 3.99795 4.13908 4.17833 4.39789 4.45096 4.59013 4.70083 4.83679 4.97820 5.11692 5.15492 5.22565 5.26330 5.30270 5.77908 5.83851 6.05392 6.42229 6.71388 7.08830 8.17352 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.007160 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.715181 B = 3909.627947 C = 6331.620195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.567 6.567 4 N -0.667 5.667 5 C 0.179 3.821 6 C -0.140 4.140 7 C -0.058 4.058 8 C -0.096 4.096 9 Cl -0.063 7.063 10 C 0.199 3.801 11 N -1.056 6.056 12 S 2.704 3.296 13 O -1.020 7.020 14 O -1.033 7.033 15 C -1.030 5.030 16 H 0.130 0.870 17 C 0.077 3.923 18 N -0.888 5.888 19 Si 0.990 3.010 20 H -0.263 1.263 21 H -0.261 1.261 22 H -0.236 1.236 23 C -0.206 4.206 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.428 0.572 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.424 0.576 31 H 0.302 0.698 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 13.243 3.768 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.299 3.701 3 O -0.446 6.446 4 N -0.313 5.313 5 C 0.083 3.917 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.127 4.127 9 Cl -0.035 7.035 10 C 0.099 3.901 11 N -0.801 5.801 12 S 2.806 3.194 13 O -1.010 7.010 14 O -1.024 7.024 15 C -1.164 5.164 16 H 0.148 0.852 17 C -0.138 4.138 18 N -0.519 5.519 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.158 1.158 23 C -0.230 4.230 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.266 0.734 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.260 0.740 31 H 0.112 0.888 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.183 12.929 4.273 14.955 hybrid contribution -0.115 -0.646 -1.068 1.254 sum -6.298 12.283 3.204 14.171 Atomic orbital electron populations 1.21978 0.86539 1.06901 1.06849 1.21925 0.92705 0.81967 0.73463 1.90693 1.71668 1.32439 1.49752 1.43744 1.04003 1.11459 1.72123 1.17558 0.84307 0.95087 0.94763 1.21260 0.92925 1.00110 1.01875 1.21048 0.93994 0.96590 0.96139 1.20827 0.84773 1.00411 1.06704 1.98325 1.09494 1.98375 1.97262 1.17052 0.90831 0.89028 0.93205 1.53689 1.36310 1.27362 1.62778 1.00679 0.75304 0.69424 0.73958 1.93355 1.84531 1.81907 1.41165 1.93342 1.68443 1.66975 1.73621 1.30737 1.29217 1.04039 1.52422 0.85236 1.25998 1.02467 0.92360 0.92927 1.69982 1.40781 1.01536 1.39569 0.85122 0.75302 0.80727 0.78058 1.18711 1.18495 1.15847 1.21494 0.92685 1.04024 1.04774 0.86396 0.88065 0.87144 0.73354 0.82820 0.81446 0.73954 0.88793 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.32 71.24 0.74 -1.11 16 2 C 0.51 11.27 7.78 87.66 0.68 11.95 16 3 O -0.57 -16.76 14.54 -3.06 -0.04 -16.81 16 4 N -0.67 -16.15 5.33 -303.53 -1.62 -17.76 16 5 C 0.18 5.61 6.29 38.12 0.24 5.85 16 6 C -0.14 -4.08 8.69 22.42 0.19 -3.88 16 7 C -0.06 -1.61 9.81 22.26 0.22 -1.39 16 8 C -0.10 -3.12 6.34 22.46 0.14 -2.98 16 9 Cl -0.06 -1.86 27.88 -2.72 -0.08 -1.94 16 10 C 0.20 7.61 6.21 38.20 0.24 7.85 16 11 N -1.06 -44.09 5.55 -51.34 -0.29 -44.38 16 12 S 2.70 142.17 4.62 -56.49 -0.26 141.91 16 13 O -1.02 -58.71 17.38 -128.00 -2.23 -60.94 16 14 O -1.03 -60.91 18.02 -128.00 -2.31 -63.21 16 15 C -1.03 -52.29 7.56 67.73 0.51 -51.78 16 16 H 0.13 5.86 6.98 -2.91 -0.02 5.84 16 17 C 0.08 3.92 5.46 84.65 0.46 4.39 16 18 N -0.89 -49.64 13.19 21.45 0.28 -49.36 16 19 Si 0.99 37.08 29.54 68.60 2.03 39.10 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 23 C -0.21 -7.68 8.79 22.52 0.20 -7.48 16 24 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.08 8.12 -2.39 -0.02 1.06 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.43 8.32 8.82 -92.71 -0.82 7.50 16 28 H 0.15 4.22 6.24 -2.91 -0.02 4.20 16 29 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.42 15.76 8.09 -96.75 -0.78 14.98 16 31 H 0.30 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.16 6.26 4.54 -2.91 -0.01 6.24 16 Total: -1.00 -75.97 310.08 -1.27 -77.24 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.38 Total: 34.74 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.62 Total: -38.59 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -1.62 Total: -111.50 kcal Atomic # 8 Polarization: -136.39 SS G_CDS: -4.58 Total: -140.96 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 16 Polarization: 142.17 SS G_CDS: -0.26 Total: 141.91 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -75.97 -1.27 -77.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.441 kcal (2) G-P(sol) polarization free energy of solvation -75.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds