Wall clock time and date at job start Tue Mar 31 2020 12:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21290 * 120.00294 * 2 1 4 4 N 1.34782 * 120.00160 * 180.02562 * 2 1 3 5 5 C 1.39969 * 120.00031 * 185.52636 * 4 2 1 6 6 C 1.38738 * 120.03837 * 24.82844 * 5 4 2 7 7 C 1.38773 * 119.86739 * 180.29657 * 6 5 4 8 8 N 1.39736 * 120.02919 * 179.70442 * 7 6 5 9 9 S 1.65596 * 120.00046 * 224.72787 * 8 7 6 10 10 O 1.42098 * 106.40335 * 311.45893 * 9 8 7 11 11 O 1.42106 * 106.40368 * 178.53901 * 9 8 7 12 12 C 1.76201 * 107.21936 * 65.00052 * 9 8 7 13 13 H 1.07998 * 119.99718 * 359.71813 * 12 9 8 14 14 C 1.37873 * 119.99853 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99828 * 179.71845 * 14 12 9 16 16 Si 1.86798 * 120.00313 * 359.72488 * 14 12 9 17 17 H 1.48499 * 109.47272 * 89.99687 * 16 14 12 18 18 H 1.48505 * 109.47236 * 210.00266 * 16 14 12 19 19 H 1.48498 * 109.46944 * 329.99684 * 16 14 12 20 20 C 1.38954 * 119.94281 * 359.43232 * 7 6 5 21 21 C 1.38155 * 120.07721 * 0.27229 * 20 7 6 22 22 C 1.38258 * 120.12700 * 0.02562 * 21 20 7 23 23 Cl 1.73596 * 119.97162 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47346 * 299.99972 * 1 2 3 26 26 H 1.08996 * 109.47272 * 60.00072 * 1 2 3 27 27 H 0.97001 * 119.99480 * 5.52414 * 4 2 1 28 28 H 1.07998 * 120.07007 * 0.02562 * 6 5 4 29 29 H 0.97002 * 119.99534 * 44.72373 * 8 7 6 30 30 H 0.97002 * 120.00114 * 179.97438 * 15 14 12 31 31 H 1.08004 * 119.96315 * 180.30214 * 20 7 6 32 32 H 1.07994 * 119.93906 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5757 -1.1701 0.1162 6 6 4.2235 -0.1072 0.7291 7 6 5.6070 -0.1108 0.8374 8 7 6.2634 0.9608 1.4485 9 16 7.6200 1.6066 0.7523 10 8 8.4676 0.5115 0.4337 11 8 8.0235 2.6853 1.5847 12 6 7.1297 2.3192 -0.7828 13 1 6.0974 2.2689 -1.0962 14 6 8.0650 2.9353 -1.5868 15 7 7.7000 3.4623 -2.7351 16 14 9.8507 3.0214 -1.0452 17 1 10.5768 1.8250 -1.5417 18 1 10.4780 4.2474 -1.6010 19 1 9.9167 3.0605 0.4378 20 6 6.3386 -1.1836 0.3427 21 6 5.6907 -2.2436 -0.2617 22 6 4.3130 -2.2403 -0.3767 23 17 3.5031 -3.5741 -1.1375 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6992 -2.0053 -0.0818 28 1 3.6526 0.7233 1.1172 29 1 5.9242 1.3264 2.2805 30 1 8.3580 3.8962 -3.3006 31 1 7.4150 -1.1890 0.4312 32 1 6.2616 -3.0760 -0.6457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:46 Heat of formation + Delta-G solvation = -88.366981 kcal Electronic energy + Delta-G solvation = -22284.036649 eV Core-core repulsion = 18590.679876 eV Total energy + Delta-G solvation = -3693.356773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.60791 -38.69533 -36.66242 -35.81276 -35.26309 -34.61069 -33.75136 -33.03566 -31.02606 -29.07614 -28.12606 -26.43469 -23.26039 -22.21319 -20.63956 -19.24402 -18.39602 -17.62070 -17.04987 -16.72379 -16.39570 -15.85592 -15.61991 -15.08815 -14.73577 -14.19431 -13.90565 -13.55400 -13.43321 -13.38538 -12.89743 -12.87697 -12.62566 -12.40966 -12.04938 -11.80201 -11.52226 -11.33834 -11.04701 -10.91948 -10.72059 -10.67902 -10.43618 -9.94251 -9.93630 -9.70955 -9.22574 -9.05634 -8.26678 -7.79924 -6.80152 -5.35874 1.20496 1.43628 1.88635 2.15500 2.52454 2.92760 3.05639 3.15989 3.23742 3.83844 3.92718 4.06822 4.53042 4.58233 4.86981 4.93875 5.13929 5.16118 5.33367 5.44172 5.48119 5.63270 5.70558 6.00302 6.07643 6.15947 6.47213 6.50102 6.81394 7.03824 7.23300 7.46829 7.56205 7.97415 8.24592 8.68823 10.32199 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.004708 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.462717 B = 5946.101321 C = 6476.489428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.511 6.511 4 N -0.668 5.668 5 C 0.171 3.829 6 C -0.144 4.144 7 C 0.205 3.795 8 N -1.060 6.060 9 S 2.667 3.333 10 O -1.000 7.000 11 O -0.998 6.998 12 C -1.009 5.009 13 H 0.125 0.875 14 C 0.154 3.846 15 N -0.817 5.817 16 Si 0.801 3.199 17 H -0.244 1.244 18 H -0.254 1.254 19 H -0.221 1.221 20 C -0.153 4.153 21 C -0.065 4.065 22 C -0.090 4.090 23 Cl -0.080 7.080 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.411 0.589 28 H 0.157 0.843 29 H 0.417 0.583 30 H 0.281 0.719 31 H 0.171 0.829 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -12.513 5.411 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.385 6.385 4 N -0.314 5.314 5 C 0.075 3.925 6 C -0.168 4.168 7 C 0.106 3.894 8 N -0.804 5.804 9 S 2.771 3.229 10 O -0.990 6.990 11 O -0.988 6.988 12 C -1.144 5.144 13 H 0.143 0.857 14 C -0.066 4.066 15 N -0.446 5.446 16 Si 0.621 3.379 17 H -0.168 1.168 18 H -0.178 1.178 19 H -0.143 1.143 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.120 4.120 23 Cl -0.051 7.051 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.248 0.752 28 H 0.175 0.825 29 H 0.252 0.748 30 H 0.092 0.908 31 H 0.188 0.812 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.520 -11.779 5.470 17.360 hybrid contribution -0.299 -0.033 -0.379 0.484 sum -11.819 -11.812 5.091 17.468 Atomic orbital electron populations 1.21852 0.90617 1.04436 1.05828 1.21056 0.90956 0.83131 0.75549 1.90799 1.69999 1.31120 1.46590 1.43691 1.04992 1.10263 1.72489 1.17145 0.82780 0.94643 0.97939 1.21256 0.93733 0.99540 1.02301 1.17284 0.90940 0.87015 0.94160 1.53538 1.48639 1.42950 1.35302 1.01787 0.71241 0.73521 0.76398 1.93351 1.64566 1.55315 1.85775 1.93502 1.80107 1.54330 1.70849 1.30269 1.07187 1.52564 1.24406 0.85709 1.24413 0.98845 0.90150 0.93193 1.69996 1.36081 1.29326 1.09196 0.87878 0.84892 0.81121 0.84038 1.16804 1.17762 1.14284 1.21999 1.03221 0.91417 1.00896 1.20707 0.90956 0.99056 0.97746 1.20536 0.92970 0.91791 1.06686 1.98319 1.79740 1.46208 1.80841 0.90418 0.88238 0.88227 0.75178 0.82545 0.74810 0.90817 0.81164 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.39 36.00 0.37 -0.78 16 2 C 0.50 6.24 7.74 -10.99 -0.09 6.15 16 3 O -0.51 -8.96 14.26 5.55 0.08 -8.88 16 4 N -0.67 -7.82 5.19 -9.85 -0.05 -7.87 16 5 C 0.17 2.59 6.43 -83.68 -0.54 2.06 16 6 C -0.14 -2.52 8.64 -39.20 -0.34 -2.86 16 7 C 0.20 3.87 6.21 -83.79 -0.52 3.35 16 8 N -1.06 -20.89 5.77 32.41 0.19 -20.71 16 9 S 2.67 66.05 4.16 -107.50 -0.45 65.60 16 10 O -1.00 -25.24 13.76 -57.17 -0.79 -26.02 16 11 O -1.00 -26.43 16.00 -57.17 -0.92 -27.34 16 12 C -1.01 -28.72 10.22 30.60 0.31 -28.40 16 13 H 0.12 3.73 8.06 -52.49 -0.42 3.30 16 14 C 0.15 4.47 5.47 -17.82 -0.10 4.37 16 15 N -0.82 -23.96 13.96 55.43 0.77 -23.18 16 16 Si 0.80 20.41 26.54 -169.99 -4.51 15.90 16 17 H -0.24 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.22 -5.68 5.60 56.52 0.32 -5.37 16 20 C -0.15 -2.78 9.18 -39.35 -0.36 -3.14 16 21 C -0.06 -0.99 9.81 -39.60 -0.39 -1.38 16 22 C -0.09 -1.29 6.34 -39.29 -0.25 -1.54 16 23 Cl -0.08 -0.91 27.77 -51.86 -1.44 -2.35 16 24 H 0.08 0.31 7.92 -51.92 -0.41 -0.10 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.41 3.46 7.59 -40.82 -0.31 3.15 16 28 H 0.16 2.78 5.79 -52.49 -0.30 2.48 16 29 H 0.42 6.83 8.95 -34.47 -0.31 6.52 16 30 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.17 3.27 5.58 -52.48 -0.29 2.97 16 32 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -34.87 304.20 -6.96 -41.83 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -2.54 Total: 10.63 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.89 Total: -22.18 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.91 Total: -51.76 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -1.62 Total: -62.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.51 Total: 15.90 kcal Atomic # 16 Polarization: 66.05 SS G_CDS: -0.45 Total: 65.60 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.44 Total: -2.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.87 -6.96 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.540 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds