Wall clock time and date at job start Tue Mar 31 2020 11:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99908 * 2 1 4 4 H 1.48496 * 109.47141 * 269.99985 * 3 2 1 5 5 H 1.48494 * 109.47386 * 30.00666 * 3 2 1 6 6 H 1.48505 * 109.46919 * 150.00566 * 3 2 1 7 7 C 1.37877 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99658 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00231 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40328 * 71.33912 * 9 7 2 11 11 O 1.42096 * 106.40073 * 298.41722 * 9 7 2 12 12 N 1.65601 * 107.21668 * 184.87632 * 9 7 2 13 13 C 1.39935 * 119.99718 * 64.24118 * 12 9 7 14 14 C 1.39372 * 119.77360 * 254.92456 * 13 12 9 15 15 C 1.37571 * 120.00436 * 179.73546 * 14 13 12 16 16 C 1.39315 * 120.21740 * 0.50654 * 15 14 13 17 17 S 1.76130 * 131.54084 * 179.72931 * 16 15 14 18 18 C 1.70623 * 90.85463 * 180.02562 * 17 16 15 19 19 Cl 1.73602 * 124.24762 * 179.97438 * 18 17 16 20 20 N 1.28098 * 111.50787 * 359.97438 * 18 17 16 21 21 C 1.34719 * 117.79188 * 0.02562 * 20 18 17 22 22 C 1.37798 * 119.77320 * 75.19875 * 13 12 9 23 23 H 0.96998 * 120.00140 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00047 * 243.96072 * 12 9 7 25 25 H 1.07995 * 119.99795 * 359.97438 * 14 13 12 26 26 H 1.07994 * 119.89208 * 180.26870 * 15 14 13 27 27 H 1.07997 * 119.87495 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.5445 -2.8491 -1.2918 11 8 0.3615 -2.7433 1.1986 12 7 2.2433 -3.9326 0.1332 13 6 3.0225 -4.0407 1.2905 14 6 4.3608 -3.6526 1.2625 15 6 5.1298 -3.7518 2.3989 16 6 4.5783 -4.2495 3.5774 17 16 5.2743 -4.5082 5.1746 18 6 3.7849 -5.1049 5.7550 19 17 3.5181 -5.6505 7.3813 20 7 2.8883 -5.0998 4.8402 21 6 3.2382 -4.6479 3.6202 22 6 2.4630 -4.5356 2.4484 23 1 -0.4850 0.8400 0.0004 24 1 2.3562 -4.5703 -0.5889 25 1 4.7931 -3.2703 0.3497 26 1 6.1654 -3.4464 2.3763 27 1 1.4261 -4.8374 2.4586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192979095.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:00 Heat of formation + Delta-G solvation = -33.836795 kcal Electronic energy + Delta-G solvation = -19287.401681 eV Core-core repulsion = 15903.329290 eV Total energy + Delta-G solvation = -3384.072390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.969 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42954 -37.76774 -36.87634 -35.33222 -34.11251 -33.88705 -33.11657 -30.37578 -28.61520 -26.21433 -24.94228 -22.88664 -21.49196 -19.21141 -18.78835 -17.77249 -17.21597 -16.42699 -16.26860 -15.87960 -15.21307 -15.02028 -14.61388 -14.02666 -13.86126 -13.76646 -13.26132 -12.69913 -12.29974 -12.08153 -11.66050 -11.43187 -11.29823 -11.25953 -11.19394 -10.74969 -10.65891 -10.43334 -10.31401 -10.07131 -9.89401 -9.53703 -9.30911 -8.86974 -8.53283 -8.06185 -6.77396 -5.40319 0.23968 0.55965 1.07218 1.43642 1.65064 2.09127 2.25497 3.02761 3.09776 3.15169 3.64014 3.96458 4.12501 4.53370 4.58154 4.70170 5.08031 5.23290 5.40115 5.63208 5.83264 5.94539 6.04814 6.22248 6.47248 6.55376 6.76479 7.25199 7.33198 7.68322 7.87427 8.81495 10.17204 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004101 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.452315 B = 6826.349219 C = 7133.714367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.134 3.866 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.015 5.015 8 H 0.104 0.896 9 S 2.702 3.298 10 O -0.999 6.999 11 O -0.990 6.990 12 N -1.086 6.086 13 C 0.180 3.820 14 C -0.082 4.082 15 C -0.071 4.071 16 C -0.181 4.181 17 S 0.152 5.848 18 C 0.109 3.891 19 Cl 0.023 6.977 20 N -0.444 5.444 21 C 0.094 3.906 22 C -0.046 4.046 23 H 0.292 0.708 24 H 0.414 0.586 25 H 0.147 0.853 26 H 0.138 0.862 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.186 -8.355 8.464 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.149 5.149 8 H 0.122 0.878 9 S 2.804 3.196 10 O -0.990 6.990 11 O -0.980 6.980 12 N -0.835 5.835 13 C 0.081 3.919 14 C -0.106 4.106 15 C -0.094 4.094 16 C -0.300 4.300 17 S 0.402 5.598 18 C -0.202 4.202 19 Cl 0.051 6.949 20 N -0.160 5.160 21 C -0.025 4.025 22 C -0.070 4.070 23 H 0.102 0.898 24 H 0.249 0.751 25 H 0.165 0.835 26 H 0.155 0.845 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.354 -8.438 9.327 17.630 hybrid contribution 0.231 0.971 -0.713 1.226 sum 12.585 -7.468 8.614 16.981 Atomic orbital electron populations 1.69890 1.06772 1.30881 1.39656 1.24735 0.94484 1.00816 0.88456 0.86152 0.80204 0.79991 0.79205 1.19119 1.19930 1.18575 1.30403 1.06045 1.11215 1.67235 0.87791 1.00998 0.72189 0.73362 0.73082 1.93400 1.75834 1.87282 1.42443 1.93391 1.68546 1.87070 1.48961 1.54045 1.57809 1.48620 1.23067 1.16865 0.90469 0.97631 0.86914 1.21578 0.93293 0.97090 0.98659 1.20134 1.00218 0.99576 0.89495 1.23855 0.97714 1.09384 0.99019 1.83813 1.10592 1.63735 1.01665 1.26443 0.94954 1.04847 0.93939 1.98433 1.96480 1.87644 1.12354 1.65735 1.33811 1.16649 0.99773 1.18491 0.91129 1.02193 0.90698 1.21064 1.00572 0.96305 0.89047 0.89767 0.75051 0.83545 0.84457 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.22 13.10 55.43 0.73 -23.49 15 2 C 0.13 3.62 5.46 -17.82 -0.10 3.52 15 3 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 7 C -1.02 -26.65 9.66 30.60 0.30 -26.35 15 8 H 0.10 2.45 7.81 -52.49 -0.41 2.04 15 9 S 2.70 68.33 5.02 -107.50 -0.54 67.79 15 10 O -1.00 -27.86 18.02 -57.17 -1.03 -28.89 15 11 O -0.99 -27.91 16.92 -57.17 -0.97 -28.87 15 12 N -1.09 -20.07 5.69 32.34 0.18 -19.89 15 13 C 0.18 3.11 5.79 -83.90 -0.49 2.63 15 14 C -0.08 -1.17 9.96 -39.40 -0.39 -1.56 15 15 C -0.07 -0.90 10.05 -39.42 -0.40 -1.29 15 16 C -0.18 -2.59 6.55 -38.57 -0.25 -2.84 15 17 S 0.15 1.76 23.16 -107.50 -2.49 -0.73 15 18 C 0.11 1.50 7.92 51.20 0.41 1.91 15 19 Cl 0.02 0.26 29.32 -51.86 -1.52 -1.26 15 20 N -0.44 -7.45 10.58 -9.99 -0.11 -7.56 15 21 C 0.09 1.60 6.99 -84.96 -0.59 1.00 15 22 C -0.05 -0.83 9.31 -38.71 -0.36 -1.19 15 23 H 0.29 7.56 8.31 -40.82 -0.34 7.22 15 24 H 0.41 6.21 8.95 -34.47 -0.31 5.90 15 25 H 0.15 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.15 2.81 7.91 -52.49 -0.42 2.40 15 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -34.24 293.46 -9.33 -43.57 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -1.11 Total: 4.09 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -1.88 Total: -24.18 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.80 Total: -50.94 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -2.00 Total: -57.77 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 70.09 SS G_CDS: -3.03 Total: 67.06 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.24 -9.33 -43.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979095.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.733 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds