Wall clock time and date at job start Tue Mar 31 2020 11:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99908 * 2 1 4 4 H 1.48496 * 109.47141 * 269.99985 * 3 2 1 5 5 H 1.48494 * 109.47386 * 30.00666 * 3 2 1 6 6 H 1.48505 * 109.46919 * 150.00566 * 3 2 1 7 7 C 1.37877 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99658 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00231 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40328 * 71.33912 * 9 7 2 11 11 O 1.42096 * 106.40073 * 298.41722 * 9 7 2 12 12 N 1.65601 * 107.21668 * 184.87632 * 9 7 2 13 13 C 1.39935 * 119.99718 * 64.24118 * 12 9 7 14 14 C 1.39372 * 119.77360 * 254.92456 * 13 12 9 15 15 C 1.37571 * 120.00436 * 179.73546 * 14 13 12 16 16 C 1.39315 * 120.21740 * 0.50654 * 15 14 13 17 17 S 1.76130 * 131.54084 * 179.72931 * 16 15 14 18 18 C 1.70623 * 90.85463 * 180.02562 * 17 16 15 19 19 Cl 1.73602 * 124.24762 * 179.97438 * 18 17 16 20 20 N 1.28098 * 111.50787 * 359.97438 * 18 17 16 21 21 C 1.34719 * 117.79188 * 0.02562 * 20 18 17 22 22 C 1.37798 * 119.77320 * 75.19875 * 13 12 9 23 23 H 0.96998 * 120.00140 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00047 * 243.96072 * 12 9 7 25 25 H 1.07995 * 119.99795 * 359.97438 * 14 13 12 26 26 H 1.07994 * 119.89208 * 180.26870 * 15 14 13 27 27 H 1.07997 * 119.87495 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.5445 -2.8491 -1.2918 11 8 0.3615 -2.7433 1.1986 12 7 2.2433 -3.9326 0.1332 13 6 3.0225 -4.0407 1.2905 14 6 4.3608 -3.6526 1.2625 15 6 5.1298 -3.7518 2.3989 16 6 4.5783 -4.2495 3.5774 17 16 5.2743 -4.5082 5.1746 18 6 3.7849 -5.1049 5.7550 19 17 3.5181 -5.6505 7.3813 20 7 2.8883 -5.0998 4.8402 21 6 3.2382 -4.6479 3.6202 22 6 2.4630 -4.5356 2.4484 23 1 -0.4850 0.8400 0.0004 24 1 2.3562 -4.5703 -0.5889 25 1 4.7931 -3.2703 0.3497 26 1 6.1654 -3.4464 2.3763 27 1 1.4261 -4.8374 2.4586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192979095.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:00 Heat of formation + Delta-G solvation = -60.688465 kcal Electronic energy + Delta-G solvation = -19288.566056 eV Core-core repulsion = 15903.329290 eV Total energy + Delta-G solvation = -3385.236766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.969 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58287 -38.93061 -37.94531 -37.41640 -36.20904 -35.34987 -35.00158 -31.56529 -29.85557 -28.26044 -26.05544 -24.05920 -22.71725 -21.12959 -19.91957 -19.50363 -18.55754 -18.31417 -17.44361 -17.22188 -16.90327 -16.31185 -15.99280 -15.80053 -15.51975 -14.97043 -14.51364 -13.99743 -13.81587 -13.39641 -13.31859 -13.00111 -12.96714 -12.57925 -12.55651 -12.48691 -12.31014 -12.29041 -12.10048 -11.30363 -11.23581 -11.15241 -10.94268 -10.67561 -9.70949 -9.15962 -8.75343 -7.48209 -0.87006 -0.44700 -0.22217 0.31738 0.37601 0.64000 1.09071 1.36478 1.36959 1.52743 2.20708 2.44843 2.59786 2.72201 3.17280 3.51372 3.64338 4.02966 4.06448 4.32093 4.39990 4.61809 4.71362 4.91379 5.05606 5.27616 5.33393 5.53984 5.91522 6.22488 6.27717 6.78684 8.21281 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004101 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.452315 B = 6826.349219 C = 7133.714367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.989 3.011 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.241 1.241 7 C -1.028 5.028 8 H 0.130 0.870 9 S 2.708 3.292 10 O -1.037 7.037 11 O -1.031 7.031 12 N -1.068 6.068 13 C 0.159 3.841 14 C -0.085 4.085 15 C -0.050 4.050 16 C -0.198 4.198 17 S 0.247 5.753 18 C 0.095 3.905 19 Cl 0.041 6.959 20 N -0.490 5.490 21 C 0.074 3.926 22 C -0.078 4.078 23 H 0.298 0.702 24 H 0.429 0.571 25 H 0.175 0.825 26 H 0.186 0.814 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.342 -7.310 9.317 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.164 1.164 7 C -1.162 5.162 8 H 0.148 0.852 9 S 2.811 3.189 10 O -1.027 7.027 11 O -1.021 7.021 12 N -0.823 5.823 13 C 0.062 3.938 14 C -0.109 4.109 15 C -0.073 4.073 16 C -0.317 4.317 17 S 0.499 5.501 18 C -0.214 4.214 19 Cl 0.068 6.932 20 N -0.207 5.207 21 C -0.045 4.045 22 C -0.102 4.102 23 H 0.108 0.892 24 H 0.268 0.732 25 H 0.192 0.808 26 H 0.203 0.797 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.519 -7.434 10.187 20.783 hybrid contribution -0.970 0.501 -0.814 1.362 sum 15.550 -6.933 9.373 19.435 Atomic orbital electron populations 1.70005 1.08904 1.32318 1.41404 1.26030 0.95324 1.05426 0.87541 0.85134 0.79366 0.74640 0.80125 1.17714 1.19401 1.16359 1.30755 1.07477 1.11408 1.66586 0.85171 1.00442 0.72667 0.74134 0.71651 1.93337 1.77517 1.88084 1.43776 1.93337 1.70608 1.87924 1.50235 1.53202 1.57168 1.47561 1.24333 1.17117 0.91802 0.99118 0.85785 1.21843 0.91686 0.96847 1.00563 1.20660 1.01890 0.96924 0.87852 1.24310 0.97102 1.08833 1.01461 1.83451 1.07153 1.61284 0.98252 1.26928 0.96163 1.03994 0.94331 1.98439 1.96581 1.87398 1.10745 1.65728 1.35787 1.18782 1.00440 1.18507 0.92444 1.03024 0.90488 1.20968 0.99894 0.98684 0.90679 0.89203 0.73219 0.80782 0.79697 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.68 13.10 21.45 0.28 -52.40 15 2 C 0.07 3.76 5.46 84.65 0.46 4.22 15 3 Si 0.99 39.67 29.54 68.60 2.03 41.69 15 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 6 H -0.24 -8.76 7.11 99.48 0.71 -8.05 15 7 C -1.03 -53.68 9.66 67.73 0.65 -53.03 15 8 H 0.13 5.86 7.81 -2.91 -0.02 5.83 15 9 S 2.71 141.46 5.02 -56.49 -0.28 141.18 15 10 O -1.04 -60.04 18.02 -128.00 -2.31 -62.34 15 11 O -1.03 -61.32 16.92 -128.00 -2.17 -63.48 15 12 N -1.07 -40.26 5.69 -51.60 -0.29 -40.56 15 13 C 0.16 5.52 5.79 38.02 0.22 5.74 15 14 C -0.09 -2.19 9.96 22.39 0.22 -1.97 15 15 C -0.05 -1.07 10.05 22.37 0.22 -0.85 15 16 C -0.20 -5.14 6.55 22.92 0.15 -4.99 15 17 S 0.25 4.85 23.16 -56.49 -1.31 3.54 15 18 C 0.09 2.48 7.92 130.79 1.04 3.52 15 19 Cl 0.04 0.86 29.32 -2.72 -0.08 0.78 15 20 N -0.49 -16.55 10.58 -185.49 -1.96 -18.51 15 21 C 0.07 2.54 6.99 39.76 0.28 2.82 15 22 C -0.08 -2.95 9.31 22.83 0.21 -2.74 15 23 H 0.30 15.83 8.31 -92.71 -0.77 15.06 15 24 H 0.43 13.11 8.95 -96.75 -0.87 12.25 15 25 H 0.17 3.44 8.06 -2.91 -0.02 3.41 15 26 H 0.19 2.18 8.06 -2.91 -0.02 2.15 15 27 H 0.12 5.07 7.91 -2.91 -0.02 5.04 15 Total: -1.00 -78.01 293.46 -2.24 -80.25 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.39 Total: 17.13 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 3.46 Total: -47.28 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -1.98 Total: -111.47 kcal Atomic # 8 Polarization: -121.35 SS G_CDS: -4.47 Total: -125.83 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 146.31 SS G_CDS: -1.59 Total: 144.72 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -78.01 -2.24 -80.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979095.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.566 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds