Wall clock time and date at job start Tue Mar 31 2020 11:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36876 * 120.00194 * 2 1 4 4 H 1.08001 * 120.00726 * 139.04322 * 3 2 1 5 5 C 1.39047 * 119.99727 * 319.03992 * 3 2 1 6 6 N 1.31361 * 119.99848 * 159.80900 * 5 3 2 7 7 Si 1.86797 * 120.00195 * 339.80439 * 5 3 2 8 8 H 1.48502 * 109.47081 * 92.62932 * 7 5 3 9 9 H 1.48490 * 109.47498 * 212.63635 * 7 5 3 10 10 H 1.48505 * 109.47141 * 332.63405 * 7 5 3 11 11 C 1.34782 * 120.00278 * 179.97438 * 2 1 3 12 12 O 1.21604 * 119.99475 * 5.48159 * 11 2 1 13 13 C 1.47669 * 120.00453 * 185.48037 * 11 2 1 14 14 C 1.40073 * 120.56208 * 315.64461 * 13 11 2 15 15 C 1.38444 * 118.27870 * 180.02562 * 14 13 11 16 16 Cl 1.73593 * 120.34286 * 179.97438 * 15 14 13 17 17 C 1.38485 * 119.31288 * 359.97438 * 15 14 13 18 18 N 1.31916 * 121.09729 * 0.02562 * 17 15 14 19 19 C 1.31781 * 121.88376 * 359.97438 * 18 17 15 20 20 Br 1.89100 * 119.72187 * 179.97438 * 19 18 17 21 21 H 1.09006 * 109.46743 * 265.29999 * 1 2 3 22 22 H 1.08994 * 109.46930 * 25.29873 * 1 2 3 23 23 H 1.08998 * 109.46700 * 145.30213 * 1 2 3 24 24 H 0.97009 * 120.00052 * 180.02562 * 6 5 3 25 25 H 1.07994 * 120.85707 * 0.04419 * 14 13 11 26 26 H 1.07995 * 119.45440 * 179.72354 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0312 1.2999 0.6130 5 6 1.7095 2.2421 -0.7894 6 7 2.0903 3.4692 -0.5158 7 14 0.5771 1.9169 -2.2390 8 1 -0.8360 2.0528 -1.8034 9 1 0.8593 2.8978 -3.3175 10 1 0.8079 0.5412 -2.7485 11 6 2.1390 -1.1672 0.0005 12 8 1.5351 -2.2179 -0.0996 13 6 3.6106 -1.1701 0.1227 14 6 4.3884 -0.2702 -0.6170 15 6 5.7639 -0.3145 -0.4665 16 17 6.7792 0.7757 -1.3576 17 6 6.3215 -1.2376 0.4023 18 7 5.5641 -2.0734 1.0864 19 6 4.2508 -2.0706 0.9780 20 35 3.2241 -3.2966 1.9874 21 1 -0.3633 -0.0842 1.0243 22 1 -0.3633 0.9291 -0.4391 23 1 -0.3632 -0.8449 -0.5850 24 1 1.7831 4.2065 -1.0663 25 1 3.9270 0.4400 -1.2871 26 1 7.3945 -1.2772 0.5181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193267609.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:46 Heat of formation + Delta-G solvation = 1.658945 kcal Electronic energy + Delta-G solvation = -16748.898089 eV Core-core repulsion = 13707.140646 eV Total energy + Delta-G solvation = -3041.757443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.78320 -40.10820 -37.74637 -36.90830 -34.05410 -33.89210 -33.43852 -30.85468 -28.52967 -27.14315 -25.23809 -24.28614 -21.36439 -19.75595 -18.39134 -18.08256 -17.86553 -16.86380 -16.65368 -16.07647 -15.70399 -15.44595 -14.61178 -14.54716 -14.34760 -14.04823 -13.66142 -13.42411 -13.31938 -12.80191 -12.32590 -12.31400 -11.92951 -11.85864 -11.57709 -11.26120 -11.06558 -10.91145 -10.43988 -9.92862 -9.76365 -8.56751 -6.22762 -0.64821 -0.19918 0.16884 0.88466 1.20094 1.34059 1.44270 1.72061 2.14763 2.27175 2.47747 2.87972 3.26680 3.55690 3.62107 3.74241 4.16995 4.40859 4.49735 4.58157 4.77753 4.79838 5.07595 5.32734 5.95084 6.12887 6.30868 6.83096 7.22617 7.59117 8.55196 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.008220 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.569467 B = 3405.671825 C = 5225.188038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.462 5.462 3 C -0.355 4.355 4 H 0.081 0.919 5 C 0.043 3.957 6 N -0.880 5.880 7 Si 0.921 3.079 8 H -0.253 1.253 9 H -0.281 1.281 10 H -0.266 1.266 11 C 0.513 3.487 12 O -0.579 6.579 13 C -0.124 4.124 14 C -0.009 4.009 15 C -0.086 4.086 16 Cl -0.029 7.029 17 C 0.140 3.860 18 N -0.460 5.460 19 C 0.141 3.859 20 Br 0.017 6.983 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.284 0.716 25 H 0.159 0.841 26 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -6.814 0.536 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.182 5.182 3 C -0.483 4.483 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.515 5.515 7 Si 0.745 3.255 8 H -0.179 1.179 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.301 3.699 12 O -0.463 6.463 13 C -0.132 4.132 14 C -0.037 4.037 15 C -0.116 4.116 16 Cl 0.000 7.000 17 C -0.021 4.021 18 N -0.170 5.170 19 C -0.076 4.076 20 Br 0.102 6.898 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.176 0.824 26 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.694 -8.054 1.327 9.953 hybrid contribution -0.641 1.377 -1.382 2.053 sum 5.053 -6.678 -0.055 8.374 Atomic orbital electron populations 1.21968 0.80712 1.01915 1.02642 1.43576 1.05552 1.05033 1.64085 1.18860 1.13394 0.88592 1.27411 0.90161 1.25805 0.97863 0.94124 0.98591 1.69779 1.44254 0.99388 1.38059 0.86233 0.80260 0.78832 0.80127 1.17880 1.20748 1.19067 1.18067 0.86388 0.84232 0.81251 1.90696 1.69414 1.31577 1.54638 1.20656 0.95799 0.97376 0.99343 1.22042 0.91773 0.93921 0.95921 1.22095 0.91949 0.97459 1.00089 1.98386 1.66476 1.61747 1.73379 1.23479 1.01961 0.87737 0.88883 1.67683 1.03592 1.23153 1.22587 1.23003 0.92163 0.95788 0.96651 1.96743 1.67819 1.56216 1.69041 0.91505 0.91558 0.90986 0.90588 0.82377 0.76905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.81 9.04 127.77 1.16 3.96 15 2 N -0.46 -21.13 2.51 -662.38 -1.66 -22.80 15 3 C -0.36 -17.25 7.01 84.10 0.59 -16.66 15 4 H 0.08 4.23 6.82 -2.91 -0.02 4.21 15 5 C 0.04 2.09 5.29 84.96 0.45 2.54 15 6 N -0.88 -44.97 13.95 21.68 0.30 -44.67 15 7 Si 0.92 38.20 25.17 68.60 1.73 39.93 15 8 H -0.25 -9.80 6.60 99.48 0.66 -9.14 15 9 H -0.28 -11.48 7.11 99.48 0.71 -10.77 15 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 11 C 0.51 23.15 6.82 86.73 0.59 23.74 15 12 O -0.58 -27.24 14.88 -4.04 -0.06 -27.30 15 13 C -0.12 -5.07 5.22 -19.98 -0.10 -5.17 15 14 C -0.01 -0.35 7.79 22.76 0.18 -0.17 15 15 C -0.09 -2.64 6.34 22.38 0.14 -2.50 15 16 Cl -0.03 -0.76 28.98 -2.72 -0.08 -0.84 15 17 C 0.14 3.82 10.97 84.74 0.93 4.75 15 18 N -0.46 -15.12 10.31 -189.51 -1.95 -17.07 15 19 C 0.14 5.29 7.20 85.06 0.61 5.91 15 20 Br 0.02 0.61 31.58 -20.37 -0.64 -0.03 15 21 H 0.07 2.48 8.14 -2.38 -0.02 2.46 15 22 H 0.07 2.63 3.75 -2.39 -0.01 2.62 15 23 H 0.07 2.78 7.49 -2.39 -0.02 2.76 15 24 H 0.28 13.50 8.31 -92.70 -0.77 12.73 15 25 H 0.16 6.41 6.57 -2.91 -0.02 6.40 15 26 H 0.21 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -55.28 263.02 3.36 -51.92 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.19 Total: 4.47 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 4.54 Total: 16.39 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.31 Total: -84.54 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.06 Total: -27.30 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.73 Total: 39.93 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Atomic # 35 Polarization: 0.61 SS G_CDS: -0.64 Total: -0.03 kcal Total: -55.28 3.36 -51.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193267609.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -55.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds