Wall clock time and date at job start Tue Mar 31 2020 12:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47132 * 2 1 4 4 C 1.50707 * 109.46910 * 119.99586 * 2 1 3 5 5 H 1.08002 * 119.99457 * 93.56305 * 4 2 1 6 6 C 1.37874 * 120.00309 * 273.56876 * 4 2 1 7 7 N 1.31505 * 120.00269 * 174.34059 * 6 4 2 8 8 Si 1.86799 * 119.99717 * 354.33507 * 6 4 2 9 9 H 1.48506 * 109.47445 * 275.06959 * 8 6 4 10 10 H 1.48502 * 109.47437 * 35.06772 * 8 6 4 11 11 H 1.48502 * 109.47148 * 155.06810 * 8 6 4 12 12 N 1.46494 * 109.47239 * 239.99478 * 2 1 3 13 13 C 1.34783 * 119.99810 * 85.00345 * 12 2 1 14 14 S 1.71197 * 119.99922 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00002 * 179.97438 * 13 12 2 16 16 C 1.39890 * 120.00202 * 185.81301 * 15 13 12 17 17 C 1.38869 * 120.05705 * 220.08535 * 16 15 13 18 18 C 1.38233 * 119.93810 * 179.78985 * 17 16 15 19 19 Cl 1.73608 * 119.97157 * 180.22941 * 18 17 16 20 20 C 1.38380 * 120.05924 * 0.48073 * 18 17 16 21 21 C 1.38377 * 120.11705 * 359.74791 * 20 18 17 22 22 Cl 1.73603 * 119.97303 * 179.97438 * 21 20 18 23 23 C 1.38238 * 120.05829 * 0.02562 * 21 20 18 24 24 H 1.09003 * 109.46664 * 174.91172 * 1 2 3 25 25 H 1.08995 * 109.47087 * 294.90861 * 1 2 3 26 26 H 1.08997 * 109.47005 * 54.91771 * 1 2 3 27 27 H 0.96997 * 120.00342 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00290 * 264.99955 * 12 2 1 29 29 H 0.97005 * 120.00120 * 5.81039 * 15 13 12 30 30 H 1.08001 * 120.03296 * 0.02562 * 17 16 15 31 31 H 1.08004 * 119.94460 * 179.76746 * 20 18 17 32 32 H 1.07994 * 120.02919 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.2671 -1.7637 1.1879 6 6 2.1920 -0.0156 2.4108 7 7 2.5229 -0.6556 3.5109 8 14 1.9386 1.8347 2.4469 9 1 3.1949 2.5145 2.0407 10 1 0.8499 2.2037 1.5067 11 1 1.5695 2.2570 3.8219 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3571 14 16 1.7394 1.6426 -2.4342 15 7 2.5969 -0.6536 -3.4573 16 6 2.8463 0.0686 -4.6292 17 6 2.5005 -0.4667 -5.8630 18 6 2.7441 0.2508 -7.0191 19 17 2.3067 -0.4150 -8.5616 20 6 3.3411 1.4973 -6.9484 21 6 3.6910 2.0309 -5.7205 22 17 4.4403 3.5946 -5.6363 23 6 3.4453 1.3195 -4.5610 24 1 -0.3633 -1.0237 -0.0911 25 1 -0.3633 0.4328 0.9320 26 1 -0.3633 0.5906 -0.8410 27 1 2.6349 -0.1669 4.3413 28 1 2.2491 -1.6318 -1.1524 29 1 2.7477 -1.6116 -3.4367 30 1 2.0382 -1.4412 -5.9190 31 1 3.5340 2.0547 -7.8531 32 1 3.7190 1.7363 -3.6030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201004410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:53 Heat of formation + Delta-G solvation = 13.379211 kcal Electronic energy + Delta-G solvation = -19073.045701 eV Core-core repulsion = 15824.810139 eV Total energy + Delta-G solvation = -3248.235562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35665 -39.62571 -37.74854 -37.70012 -36.58229 -34.66524 -32.29704 -31.76218 -30.26591 -27.40262 -25.71139 -24.11666 -23.42996 -22.65934 -20.20018 -19.57740 -18.48181 -17.69030 -17.17080 -16.95040 -16.68957 -15.86003 -15.67588 -15.46716 -15.17012 -14.89806 -14.58775 -14.27844 -13.52636 -13.32387 -13.29192 -13.12429 -12.89413 -12.79951 -12.45124 -12.32364 -12.16061 -12.08109 -11.91998 -11.83941 -11.33847 -10.96409 -10.72516 -9.86409 -9.52867 -8.97492 -8.44109 -8.29239 -6.51813 -0.31134 -0.02181 0.48900 0.70088 0.87790 1.28353 1.31769 1.38894 1.50468 1.52841 2.26335 2.38669 2.54911 2.98589 3.86709 3.91980 3.97570 4.05941 4.15652 4.42874 4.62067 4.74002 4.80716 4.90955 4.95722 5.05549 5.12927 5.29717 5.39044 5.45692 5.53993 5.94893 6.09484 6.39904 6.57049 7.16675 8.69989 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.003590 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.083185 B = 7798.482556 C = 8743.355600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.238 3.762 3 H 0.063 0.937 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.044 3.956 7 N -0.924 5.924 8 Si 0.915 3.085 9 H -0.275 1.275 10 H -0.245 1.245 11 H -0.281 1.281 12 N -0.628 5.628 13 C 0.573 3.427 14 S -0.712 6.712 15 N -0.620 5.620 16 C 0.155 3.845 17 C -0.104 4.104 18 C -0.021 4.021 19 Cl -0.044 7.044 20 C -0.097 4.097 21 C -0.025 4.025 22 Cl -0.058 7.058 23 C -0.076 4.076 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.272 0.728 28 H 0.412 0.588 29 H 0.430 0.570 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -1.678 -22.863 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.134 3.866 3 H 0.080 0.920 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.158 4.158 7 N -0.562 5.562 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.168 1.168 11 H -0.206 1.206 12 N -0.251 5.251 13 C 0.209 3.791 14 S -0.582 6.582 15 N -0.249 5.249 16 C 0.060 3.940 17 C -0.125 4.125 18 C -0.049 4.049 19 Cl -0.015 7.015 20 C -0.117 4.117 21 C -0.054 4.054 22 Cl -0.029 7.029 23 C -0.099 4.099 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.251 0.749 29 H 0.273 0.727 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.753 -0.453 -22.606 22.678 hybrid contribution 0.370 -0.697 0.753 1.091 sum 2.123 -1.149 -21.853 21.986 Atomic orbital electron populations 1.22145 0.96025 1.01162 1.00920 1.19398 0.92669 0.94513 0.79974 0.91952 1.21084 1.45927 0.97043 0.93322 0.92083 1.25417 0.93466 1.01843 0.95032 1.69942 1.47660 1.38016 1.00551 0.86236 0.80358 0.81485 0.78021 1.20009 1.16807 1.20628 1.45672 1.58316 1.14049 1.07029 1.21914 0.80653 0.94154 0.82408 1.93478 1.74217 0.98133 1.92403 1.41866 1.63662 1.11828 1.07544 1.16961 0.99323 0.93088 0.84593 1.20937 1.00524 1.02511 0.88578 1.20267 1.02734 0.94446 0.87460 1.98392 1.91473 1.84995 1.26688 1.21055 0.98579 0.94625 0.97453 1.20388 1.02116 0.89137 0.93771 1.98380 1.80358 1.25504 1.98705 1.21373 0.95612 0.93919 0.99039 0.92414 0.92870 0.93255 0.91828 0.74912 0.72719 0.81547 0.82089 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.10 71.98 0.65 -5.03 16 2 C 0.24 10.04 1.88 44.25 0.08 10.12 16 3 H 0.06 2.94 4.47 -2.39 -0.01 2.93 16 4 C -0.54 -26.59 9.06 25.60 0.23 -26.36 16 5 H 0.06 3.19 8.03 -2.91 -0.02 3.17 16 6 C 0.04 2.36 5.47 84.66 0.46 2.82 16 7 N -0.92 -52.63 13.96 21.44 0.30 -52.33 16 8 Si 0.91 42.62 26.28 68.60 1.80 44.43 16 9 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.24 -11.10 6.28 99.48 0.62 -10.48 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.63 -20.67 5.07 -333.15 -1.69 -22.37 16 13 C 0.57 18.07 7.71 179.05 1.38 19.45 16 14 S -0.71 -28.90 23.75 -56.49 -1.34 -30.24 16 15 N -0.62 -13.61 5.33 -190.01 -1.01 -14.62 16 16 C 0.16 3.51 5.95 38.16 0.23 3.74 16 17 C -0.10 -1.80 9.75 22.42 0.22 -1.58 16 18 C -0.02 -0.36 6.32 22.30 0.14 -0.22 16 19 Cl -0.04 -0.66 28.95 -2.72 -0.08 -0.74 16 20 C -0.10 -1.82 9.61 22.34 0.21 -1.61 16 21 C -0.03 -0.59 6.32 22.30 0.14 -0.45 16 22 Cl -0.06 -1.38 28.95 -2.72 -0.08 -1.46 16 23 C -0.08 -2.03 7.63 22.42 0.17 -1.86 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 2.20 6.99 -2.39 -0.02 2.18 16 26 H 0.05 1.93 7.47 -2.39 -0.02 1.91 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.41 11.02 8.59 -92.71 -0.80 10.22 16 29 H 0.43 5.85 8.84 -92.70 -0.82 5.03 16 30 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.14 4.54 6.12 -6.90 -0.04 4.49 16 Total: -1.00 -64.22 314.66 1.30 -62.92 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.53 Total: 15.38 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 3.93 Total: -0.97 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -2.40 Total: -89.31 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.80 Total: 44.43 kcal Atomic # 16 Polarization: -28.90 SS G_CDS: -1.34 Total: -30.24 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.16 Total: -2.20 kcal Total: -64.22 1.30 -62.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201004410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.301 kcal (2) G-P(sol) polarization free energy of solvation -64.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds