Wall clock time and date at job start Tue Mar 31 2020 12:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47056 * 2 1 4 4 C 1.50703 * 109.46832 * 120.00015 * 2 1 3 5 5 H 1.08002 * 119.99921 * 120.00351 * 4 2 1 6 6 C 1.37871 * 120.00080 * 299.99730 * 4 2 1 7 7 N 1.31514 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00199 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47218 * 89.99966 * 8 6 4 10 10 H 1.48502 * 109.47393 * 210.00107 * 8 6 4 11 11 H 1.48503 * 109.47023 * 330.00300 * 8 6 4 12 12 N 1.46494 * 109.46875 * 240.00066 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.72690 * 12 2 1 14 14 S 1.71198 * 119.99837 * 0.27206 * 13 12 2 15 15 N 1.34776 * 120.00243 * 180.27342 * 13 12 2 16 16 C 1.39941 * 120.00018 * 175.69200 * 15 13 12 17 17 C 1.38841 * 120.07239 * 47.36490 * 16 15 13 18 18 C 1.38229 * 119.92838 * 179.72536 * 17 16 15 19 19 Cl 1.73599 * 119.96725 * 180.29721 * 18 17 16 20 20 C 1.38409 * 120.06737 * 0.54619 * 18 17 16 21 21 C 1.38247 * 120.13618 * 359.73146 * 20 18 17 22 22 C 1.38225 * 120.07346 * 359.97438 * 21 20 18 23 23 Cl 1.73595 * 120.03625 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46922 * 300.00166 * 1 2 3 25 25 H 1.09004 * 109.46943 * 59.99666 * 1 2 3 26 26 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 27 27 H 0.97009 * 120.00295 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00116 * 264.99887 * 12 2 1 29 29 H 0.97006 * 120.00048 * 355.68421 * 15 13 12 30 30 H 1.07997 * 120.03460 * 359.97438 * 17 16 15 31 31 H 1.08005 * 119.93428 * 179.69931 * 20 18 17 32 32 H 1.08001 * 119.96590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1418 -0.0196 -2.3585 14 16 1.7346 1.6415 -2.4354 15 7 2.5857 -0.6563 -3.4603 16 6 2.6286 0.0155 -4.6871 17 6 3.1781 1.2882 -4.7646 18 6 3.2240 1.9468 -5.9790 19 17 3.9178 3.5350 -6.0784 20 6 2.7128 1.3434 -7.1149 21 6 2.1599 0.0786 -7.0399 22 6 2.1164 -0.5877 -5.8296 23 17 1.4213 -2.1757 -5.7363 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7081 1.1609 3.4844 28 1 2.2490 -1.6317 -1.1526 29 1 2.8757 -1.5802 -3.4029 30 1 3.5728 1.7615 -3.8777 31 1 2.7455 1.8620 -8.0618 32 1 1.7614 -0.3895 -7.9279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201091733.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:01 Heat of formation + Delta-G solvation = 29.882185 kcal Electronic energy + Delta-G solvation = -19194.284633 eV Core-core repulsion = 15946.764693 eV Total energy + Delta-G solvation = -3247.519940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.20545 -38.16506 -36.88449 -36.34932 -35.44928 -32.92125 -30.78420 -30.19529 -28.53028 -25.49909 -24.30073 -22.85599 -22.34168 -21.06666 -18.55801 -18.36476 -16.73580 -16.21452 -15.91134 -15.71802 -14.94512 -14.88728 -14.17883 -14.00077 -13.78110 -13.43158 -12.70243 -12.53372 -12.50634 -12.17900 -11.82630 -11.28875 -11.18158 -11.13633 -11.02716 -10.98193 -10.82785 -10.66221 -10.42535 -10.35979 -9.57158 -9.23222 -8.88042 -8.64609 -8.27664 -7.25779 -6.58336 -6.25669 -4.37804 0.72448 1.04509 1.81503 1.89866 2.08050 2.40352 2.95001 3.16586 3.23864 3.24717 3.36890 4.00400 4.27297 4.55469 4.83669 5.02935 5.06727 5.07565 5.51781 5.71714 5.90516 6.02984 6.23914 6.42672 6.57246 6.76358 6.94562 6.96509 7.26877 7.42460 7.49385 7.74380 7.98970 8.14460 8.63459 9.28588 10.79421 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.003735 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.434137 B = 7495.789599 C = 8583.652202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.085 0.915 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.073 3.927 7 N -0.873 5.873 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.634 5.634 13 C 0.550 3.450 14 S -0.634 6.634 15 N -0.652 5.652 16 C 0.168 3.832 17 C -0.047 4.047 18 C -0.028 4.028 19 Cl -0.060 7.060 20 C -0.100 4.100 21 C -0.101 4.101 22 C -0.044 4.044 23 Cl -0.063 7.063 24 H 0.097 0.903 25 H 0.031 0.969 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.390 0.610 29 H 0.406 0.594 30 H 0.168 0.832 31 H 0.141 0.859 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -4.154 -18.478 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.102 0.898 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.132 4.132 7 N -0.509 5.509 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.254 5.254 13 C 0.189 3.811 14 S -0.503 6.503 15 N -0.282 5.282 16 C 0.071 3.929 17 C -0.071 4.071 18 C -0.058 4.058 19 Cl -0.031 7.031 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.074 4.074 23 Cl -0.034 7.034 24 H 0.116 0.884 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.225 0.775 29 H 0.244 0.756 30 H 0.185 0.815 31 H 0.159 0.841 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.980 -2.835 -18.065 18.714 hybrid contribution 0.594 -2.281 1.009 2.564 sum 4.574 -5.116 -17.056 18.385 Atomic orbital electron populations 1.22057 0.96861 0.99148 1.02446 1.19543 0.92196 0.95406 0.77070 0.89778 1.21085 1.33715 1.13747 0.90091 0.92162 1.24822 0.94550 0.94877 0.98954 1.69901 1.34821 1.21911 1.24283 0.86403 0.78759 0.79680 0.82008 1.20367 1.20848 1.19913 1.46243 1.57466 1.13005 1.08695 1.22426 0.81517 0.95488 0.81657 1.93248 1.72061 0.93951 1.91018 1.42070 1.65300 1.15366 1.05420 1.16798 0.99593 0.93460 0.83022 1.21459 0.95592 0.92482 0.97607 1.20661 1.02088 0.88617 0.94388 1.98377 1.82828 1.23437 1.98480 1.20972 0.98439 0.94576 0.97976 1.20683 1.00946 0.94368 0.96092 1.20937 1.02105 0.89281 0.95053 1.98374 1.82953 1.23453 1.98588 0.88420 0.94972 0.95836 0.92223 0.77470 0.75583 0.81470 0.84123 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.21 37.16 0.34 -3.12 16 2 C 0.26 6.08 2.32 -69.08 -0.16 5.92 16 3 H 0.08 2.29 6.82 -51.92 -0.35 1.94 16 4 C -0.55 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.87 -23.62 11.32 55.43 0.63 -22.99 16 8 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.63 -11.93 5.07 -56.65 -0.29 -12.21 16 13 C 0.55 9.96 7.81 -86.92 -0.68 9.29 16 14 S -0.63 -13.87 23.80 -107.50 -2.56 -16.42 16 15 N -0.65 -9.11 4.83 -11.38 -0.05 -9.17 16 16 C 0.17 2.29 5.87 -83.66 -0.49 1.80 16 17 C -0.05 -0.67 7.66 -39.36 -0.30 -0.98 16 18 C -0.03 -0.35 6.32 -39.52 -0.25 -0.60 16 19 Cl -0.06 -0.72 28.95 -51.86 -1.50 -2.23 16 20 C -0.10 -0.99 9.82 -39.52 -0.39 -1.38 16 21 C -0.10 -0.98 9.82 -39.58 -0.39 -1.37 16 22 C -0.04 -0.51 6.34 -39.31 -0.25 -0.76 16 23 Cl -0.06 -0.68 28.23 -51.86 -1.46 -2.14 16 24 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 25 H 0.03 0.75 7.47 -51.93 -0.39 0.36 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 6.20 8.56 -40.82 -0.35 5.85 16 29 H 0.41 4.52 8.55 -40.82 -0.35 4.17 16 30 H 0.17 2.76 6.31 -49.76 -0.31 2.45 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -28.77 316.35 -11.33 -40.10 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -2.88 Total: 8.85 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.96 Total: -3.39 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.28 Total: -44.38 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: -13.87 SS G_CDS: -2.56 Total: -16.42 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.97 Total: -4.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.77 -11.33 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201091733.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.983 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds