Wall clock time and date at job start Tue Mar 31 2020 12:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47056 * 2 1 4 4 C 1.50703 * 109.46832 * 120.00015 * 2 1 3 5 5 H 1.08002 * 119.99921 * 120.00351 * 4 2 1 6 6 C 1.37871 * 120.00080 * 299.99730 * 4 2 1 7 7 N 1.31514 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00199 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47218 * 89.99966 * 8 6 4 10 10 H 1.48502 * 109.47393 * 210.00107 * 8 6 4 11 11 H 1.48503 * 109.47023 * 330.00300 * 8 6 4 12 12 N 1.46494 * 109.46875 * 240.00066 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.72690 * 12 2 1 14 14 S 1.71198 * 119.99837 * 0.27206 * 13 12 2 15 15 N 1.34776 * 120.00243 * 180.27342 * 13 12 2 16 16 C 1.39941 * 120.00018 * 175.69200 * 15 13 12 17 17 C 1.38841 * 120.07239 * 47.36490 * 16 15 13 18 18 C 1.38229 * 119.92838 * 179.72536 * 17 16 15 19 19 Cl 1.73599 * 119.96725 * 180.29721 * 18 17 16 20 20 C 1.38409 * 120.06737 * 0.54619 * 18 17 16 21 21 C 1.38247 * 120.13618 * 359.73146 * 20 18 17 22 22 C 1.38225 * 120.07346 * 359.97438 * 21 20 18 23 23 Cl 1.73595 * 120.03625 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46922 * 300.00166 * 1 2 3 25 25 H 1.09004 * 109.46943 * 59.99666 * 1 2 3 26 26 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 27 27 H 0.97009 * 120.00295 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00116 * 264.99887 * 12 2 1 29 29 H 0.97006 * 120.00048 * 355.68421 * 15 13 12 30 30 H 1.07997 * 120.03460 * 359.97438 * 17 16 15 31 31 H 1.08005 * 119.93428 * 179.69931 * 20 18 17 32 32 H 1.08001 * 119.96590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1418 -0.0196 -2.3585 14 16 1.7346 1.6415 -2.4354 15 7 2.5857 -0.6563 -3.4603 16 6 2.6286 0.0155 -4.6871 17 6 3.1781 1.2882 -4.7646 18 6 3.2240 1.9468 -5.9790 19 17 3.9178 3.5350 -6.0784 20 6 2.7128 1.3434 -7.1149 21 6 2.1599 0.0786 -7.0399 22 6 2.1164 -0.5877 -5.8296 23 17 1.4213 -2.1757 -5.7363 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7081 1.1609 3.4844 28 1 2.2490 -1.6317 -1.1526 29 1 2.8757 -1.5802 -3.4029 30 1 3.5728 1.7615 -3.8777 31 1 2.7455 1.8620 -8.0618 32 1 1.7614 -0.3895 -7.9279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201091733.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:00 Heat of formation + Delta-G solvation = 14.554043 kcal Electronic energy + Delta-G solvation = -19194.949311 eV Core-core repulsion = 15946.764693 eV Total energy + Delta-G solvation = -3248.184618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31862 -39.52322 -37.83130 -37.42022 -36.77640 -34.68739 -31.81145 -31.59525 -29.95886 -27.43686 -25.67469 -23.93947 -23.51312 -22.77513 -20.02656 -19.58281 -18.07815 -17.65149 -17.16910 -16.98330 -16.68039 -15.98998 -15.61258 -15.18422 -14.93505 -14.75740 -14.54622 -13.73764 -13.43678 -13.35406 -13.17405 -12.98201 -12.83447 -12.72190 -12.38269 -12.24464 -12.13632 -12.04842 -11.96239 -11.91024 -11.17996 -10.88300 -10.57601 -9.87987 -9.45019 -8.94249 -8.23514 -8.20187 -6.38986 -0.29504 0.06310 0.50156 0.86831 0.90170 1.13683 1.44473 1.44588 1.54179 1.60664 2.36231 2.41921 2.65722 3.11052 3.65666 3.98819 4.04756 4.12657 4.57794 4.70336 4.77511 4.88345 4.96949 5.02049 5.10284 5.18375 5.21912 5.49130 5.49325 5.70708 5.87096 5.89624 6.08105 6.47213 6.72966 7.31464 8.85019 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.003735 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.434137 B = 7495.789599 C = 8583.652202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H 0.043 0.957 4 C -0.556 4.556 5 H 0.074 0.926 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.632 5.632 13 C 0.574 3.426 14 S -0.710 6.710 15 N -0.626 5.626 16 C 0.141 3.859 17 C -0.064 4.064 18 C -0.037 4.037 19 Cl -0.062 7.062 20 C -0.084 4.084 21 C -0.088 4.088 22 C -0.042 4.042 23 Cl -0.052 7.052 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.034 0.966 27 H 0.267 0.733 28 H 0.408 0.592 29 H 0.423 0.577 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -6.381 -20.435 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.061 0.939 4 C -0.595 4.595 5 H 0.092 0.908 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.795 3.205 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.254 5.254 13 C 0.210 3.790 14 S -0.580 6.580 15 N -0.255 5.255 16 C 0.045 3.955 17 C -0.088 4.088 18 C -0.066 4.066 19 Cl -0.033 7.033 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.072 4.072 23 Cl -0.023 7.023 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.264 0.736 30 H 0.156 0.844 31 H 0.192 0.808 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.444 -5.120 -20.108 21.220 hybrid contribution 0.504 -1.612 1.426 2.210 sum 4.948 -6.731 -18.682 20.464 Atomic orbital electron populations 1.21856 0.97147 0.99220 1.00839 1.19001 0.91867 0.93701 0.78520 0.93912 1.21438 1.33501 1.13975 0.90553 0.90839 1.25676 0.94701 0.95474 1.02006 1.70052 1.36172 1.23466 1.24796 0.85373 0.77803 0.79100 0.78229 1.20426 1.21000 1.18496 1.45712 1.58192 1.13656 1.07849 1.21881 0.80766 0.93993 0.82342 1.93405 1.74818 0.97710 1.92107 1.41882 1.63243 1.15836 1.04571 1.16940 1.01585 0.93806 0.83124 1.21234 0.96786 0.93125 0.97615 1.20820 1.02550 0.88615 0.94649 1.98376 1.82910 1.23613 1.98447 1.21369 0.96254 0.94467 0.98271 1.21132 0.99366 0.93893 0.96411 1.21052 1.01487 0.89757 0.94878 1.98384 1.82688 1.22591 1.98590 0.91040 0.95513 0.94703 0.92378 0.75369 0.73560 0.84375 0.80835 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 9.21 71.98 0.66 -5.70 16 2 C 0.27 13.02 2.32 44.25 0.10 13.12 16 3 H 0.04 2.44 6.82 -2.38 -0.02 2.43 16 4 C -0.56 -27.63 8.73 25.60 0.22 -27.41 16 5 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -50.27 11.32 21.44 0.24 -50.03 16 8 Si 0.97 40.45 29.54 68.60 2.03 42.48 16 9 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 12 N -0.63 -23.58 5.07 -333.14 -1.69 -25.27 16 13 C 0.57 20.87 7.81 179.05 1.40 22.26 16 14 S -0.71 -32.31 23.80 -56.49 -1.34 -33.65 16 15 N -0.63 -16.91 4.83 -189.91 -0.92 -17.82 16 16 C 0.14 3.70 5.87 38.17 0.22 3.92 16 17 C -0.06 -1.83 7.66 22.41 0.17 -1.66 16 18 C -0.04 -0.88 6.32 22.31 0.14 -0.74 16 19 Cl -0.06 -1.47 28.95 -2.72 -0.08 -1.55 16 20 C -0.08 -1.41 9.82 22.31 0.22 -1.19 16 21 C -0.09 -1.39 9.82 22.27 0.22 -1.17 16 22 C -0.04 -0.87 6.34 22.44 0.14 -0.73 16 23 Cl -0.05 -0.96 28.23 -2.72 -0.08 -1.04 16 24 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 25 H 0.03 1.27 7.47 -2.38 -0.02 1.26 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 28 H 0.41 12.33 8.56 -92.71 -0.79 11.54 16 29 H 0.42 8.60 8.55 -92.70 -0.79 7.81 16 30 H 0.14 4.82 6.31 -4.65 -0.03 4.79 16 31 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -64.60 316.35 1.71 -62.88 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.40 Total: 21.66 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 3.95 Total: 2.34 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -2.36 Total: -93.12 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: -32.31 SS G_CDS: -1.34 Total: -33.65 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.16 Total: -2.59 kcal Total: -64.60 1.71 -62.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201091733.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.437 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds