Wall clock time and date at job start Tue Mar 31 2020 12:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48496 * 109.47183 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00059 * 3 2 1 7 7 C 1.37883 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47322 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99974 * 180.02562 * 11 10 9 13 13 S 1.71203 * 120.00023 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99765 * 179.97438 * 12 11 10 15 15 C 1.39948 * 119.99950 * 185.46813 * 14 12 11 16 16 C 1.38841 * 120.06663 * 44.37701 * 15 14 12 17 17 C 1.38229 * 119.92827 * 179.97438 * 16 15 14 18 18 Cl 1.73598 * 119.96737 * 179.97438 * 17 16 15 19 19 C 1.38417 * 120.06558 * 359.97438 * 17 16 15 20 20 C 1.38245 * 120.13581 * 359.97438 * 19 17 16 21 21 C 1.38222 * 120.07027 * 0.02562 * 20 19 17 22 22 Cl 1.73610 * 120.03030 * 180.27404 * 21 20 19 23 23 H 0.96997 * 120.00320 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47352 * 60.00265 * 9 7 2 25 25 H 1.09008 * 109.47319 * 300.00058 * 9 7 2 26 26 H 1.08997 * 109.46858 * 59.99947 * 10 9 7 27 27 H 1.08995 * 109.46790 * 300.00302 * 10 9 7 28 28 H 0.97003 * 119.99160 * 359.97438 * 11 10 9 29 29 H 0.97007 * 120.00435 * 5.46718 * 14 12 11 30 30 H 1.08000 * 120.03683 * 359.95608 * 16 15 14 31 31 H 1.07996 * 119.92836 * 180.02562 * 19 17 16 32 32 H 1.07998 * 119.96317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9309 0.0001 12 6 2.1868 -6.0980 0.0007 13 16 3.8988 -6.0980 0.0015 14 7 1.5129 -7.2652 0.0018 15 6 2.2079 -8.4743 0.1180 16 6 3.2264 -8.6042 1.0526 17 6 3.9107 -9.8000 1.1652 18 17 5.1847 -9.9633 2.3330 19 6 3.5810 -10.8673 0.3478 20 6 2.5666 -10.7412 -0.5830 21 6 1.8787 -9.5481 -0.7004 22 17 0.6003 -9.3932 -1.8647 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.5428 -4.9308 0.0008 29 1 0.5461 -7.2672 -0.0779 30 1 3.4840 -7.7718 1.6907 31 1 4.1167 -11.8006 0.4380 32 1 2.3120 -11.5756 -1.2196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201091892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:58 Heat of formation + Delta-G solvation = 22.828384 kcal Electronic energy + Delta-G solvation = -18607.449910 eV Core-core repulsion = 15359.624095 eV Total energy + Delta-G solvation = -3247.825816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45355 -38.42743 -37.04838 -36.50833 -35.55301 -33.20867 -30.99806 -30.66946 -29.15500 -25.38811 -24.08749 -22.90863 -22.67895 -21.34649 -18.86761 -18.25956 -16.89917 -16.57760 -16.18791 -15.76387 -15.15861 -14.87892 -14.64081 -14.31824 -14.14868 -14.08455 -13.02937 -12.66983 -12.64023 -12.38520 -12.24103 -11.43434 -11.37270 -11.30284 -11.15743 -11.07755 -11.00128 -10.74584 -10.63713 -9.81590 -9.75080 -9.47024 -9.04701 -8.61227 -8.50503 -7.67301 -7.06586 -6.20157 -4.23890 0.51804 0.82435 1.54196 1.65321 1.87017 2.07135 2.58798 3.18353 3.27013 3.30785 3.34160 3.57785 4.34594 4.36327 4.66758 4.82350 4.87076 5.17667 5.29653 5.50080 5.69271 5.81338 5.85057 5.96154 6.11454 6.28737 6.46334 6.55212 6.85264 7.30900 7.37178 7.38098 7.77527 8.12677 8.81506 9.42098 10.91406 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.002982 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.832108 B = 9386.124888 C =10627.308475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.653 5.653 12 C 0.551 3.449 13 S -0.625 6.625 14 N -0.646 5.646 15 C 0.170 3.830 16 C -0.053 4.053 17 C -0.024 4.024 18 Cl -0.057 7.057 19 C -0.100 4.100 20 C -0.094 4.094 21 C -0.045 4.045 22 Cl -0.059 7.059 23 H 0.264 0.736 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.398 0.602 29 H 0.409 0.591 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -23.858 0.950 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.082 0.918 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.276 5.276 12 C 0.191 3.809 13 S -0.496 6.496 14 N -0.275 5.275 15 C 0.074 3.926 16 C -0.076 4.076 17 C -0.053 4.053 18 Cl -0.028 7.028 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.075 4.075 22 Cl -0.030 7.030 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.235 0.765 29 H 0.248 0.752 30 H 0.179 0.821 31 H 0.161 0.839 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.591 -23.457 0.945 23.530 hybrid contribution -1.461 1.013 -0.195 1.789 sum 0.130 -22.444 0.750 22.456 Atomic orbital electron populations 1.69935 1.06169 1.27242 1.49962 1.24992 0.94911 0.99561 0.94693 0.86517 0.79493 0.82290 0.78979 1.19944 1.21232 1.19940 1.20928 0.93402 0.89854 1.51987 0.91847 1.19389 0.94142 0.91064 0.97959 1.22406 0.96146 0.77960 1.03623 1.45822 1.10427 1.05463 1.65848 1.22440 0.96217 0.81266 0.80952 1.93432 0.88741 1.93911 1.73471 1.42092 1.09778 1.02511 1.73115 1.16774 0.96478 0.83807 0.95545 1.21196 0.93197 0.96610 0.96606 1.20645 0.94204 0.94884 0.95525 1.98387 1.49459 1.97803 1.57137 1.21005 0.97468 0.98557 0.94942 1.20733 0.95401 0.96085 0.99228 1.20880 0.96143 0.96164 0.94319 1.98387 1.49057 1.98029 1.57512 0.92653 0.95899 0.95887 0.89919 0.89993 0.76518 0.75224 0.82128 0.83909 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.85 9.11 -34.44 -0.31 -14.16 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.29 5.07 -4.04 -0.02 2.27 16 11 N -0.65 -9.87 5.56 -62.03 -0.34 -10.21 16 12 C 0.55 8.28 7.74 -86.93 -0.67 7.61 16 13 S -0.62 -11.72 25.28 -107.50 -2.72 -14.44 16 14 N -0.65 -7.52 4.89 -11.38 -0.06 -7.58 16 15 C 0.17 1.99 5.83 -83.66 -0.49 1.50 16 16 C -0.05 -0.65 7.66 -39.36 -0.30 -0.95 16 17 C -0.02 -0.25 6.32 -39.52 -0.25 -0.50 16 18 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 19 C -0.10 -0.84 9.83 -39.51 -0.39 -1.23 16 20 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 21 C -0.04 -0.45 6.34 -39.32 -0.25 -0.70 16 22 Cl -0.06 -0.55 28.15 -51.86 -1.46 -2.01 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.08 1.67 7.99 -51.93 -0.41 1.25 16 27 H 0.08 1.68 7.99 -51.93 -0.42 1.26 16 28 H 0.40 5.01 8.49 -40.82 -0.35 4.66 16 29 H 0.41 3.68 8.43 -40.82 -0.34 3.34 16 30 H 0.16 2.26 6.52 -52.49 -0.34 1.92 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -30.35 323.11 -11.90 -42.25 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.10 Total: 3.58 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.31 Total: -5.66 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.34 Total: -42.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -2.72 Total: -14.44 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -2.96 Total: -4.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.35 -11.90 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201091892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.083 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds