Wall clock time and date at job start Tue Mar 31 2020 12:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48496 * 109.47183 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00059 * 3 2 1 7 7 C 1.37883 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47322 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99974 * 180.02562 * 11 10 9 13 13 S 1.71203 * 120.00023 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99765 * 179.97438 * 12 11 10 15 15 C 1.39948 * 119.99950 * 185.46813 * 14 12 11 16 16 C 1.38841 * 120.06663 * 44.37701 * 15 14 12 17 17 C 1.38229 * 119.92827 * 179.97438 * 16 15 14 18 18 Cl 1.73598 * 119.96737 * 179.97438 * 17 16 15 19 19 C 1.38417 * 120.06558 * 359.97438 * 17 16 15 20 20 C 1.38245 * 120.13581 * 359.97438 * 19 17 16 21 21 C 1.38222 * 120.07027 * 0.02562 * 20 19 17 22 22 Cl 1.73610 * 120.03030 * 180.27404 * 21 20 19 23 23 H 0.96997 * 120.00320 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47352 * 60.00265 * 9 7 2 25 25 H 1.09008 * 109.47319 * 300.00058 * 9 7 2 26 26 H 1.08997 * 109.46858 * 59.99947 * 10 9 7 27 27 H 1.08995 * 109.46790 * 300.00302 * 10 9 7 28 28 H 0.97003 * 119.99160 * 359.97438 * 11 10 9 29 29 H 0.97007 * 120.00435 * 5.46718 * 14 12 11 30 30 H 1.08000 * 120.03683 * 359.95608 * 16 15 14 31 31 H 1.07996 * 119.92836 * 180.02562 * 19 17 16 32 32 H 1.07998 * 119.96317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9309 0.0001 12 6 2.1868 -6.0980 0.0007 13 16 3.8988 -6.0980 0.0015 14 7 1.5129 -7.2652 0.0018 15 6 2.2079 -8.4743 0.1180 16 6 3.2264 -8.6042 1.0526 17 6 3.9107 -9.8000 1.1652 18 17 5.1847 -9.9633 2.3330 19 6 3.5810 -10.8673 0.3478 20 6 2.5666 -10.7412 -0.5830 21 6 1.8787 -9.5481 -0.7004 22 17 0.6003 -9.3932 -1.8647 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.5428 -4.9308 0.0008 29 1 0.5461 -7.2672 -0.0779 30 1 3.4840 -7.7718 1.6907 31 1 4.1167 -11.8006 0.4380 32 1 2.3120 -11.5756 -1.2196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201091892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:58 Heat of formation + Delta-G solvation = 6.412876 kcal Electronic energy + Delta-G solvation = -18608.161740 eV Core-core repulsion = 15359.624095 eV Total energy + Delta-G solvation = -3248.537645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40507 -39.56089 -37.85867 -37.40943 -36.72465 -35.07930 -32.23291 -31.74653 -30.37338 -27.04815 -25.38361 -23.94754 -23.69236 -22.90711 -19.97569 -19.39404 -18.53013 -17.67198 -17.24802 -16.93918 -16.55298 -16.27033 -16.06244 -15.70409 -15.07102 -14.96838 -14.31937 -14.27277 -13.47433 -13.40703 -13.34396 -13.15593 -12.87944 -12.58221 -12.41931 -12.36500 -12.08998 -11.97318 -11.93591 -11.69917 -11.46834 -10.95767 -10.58146 -9.98297 -9.52548 -9.08099 -8.47051 -8.26880 -6.36565 -0.38709 -0.01990 0.40916 0.73889 0.86162 1.08102 1.39399 1.44277 1.44457 1.52813 2.33252 2.38425 2.46767 3.09328 3.59519 3.92789 3.99071 4.06607 4.25843 4.42338 4.52571 4.67148 4.79769 4.84053 4.94073 5.11789 5.22105 5.41942 5.45457 5.49540 5.71167 5.79938 6.08198 6.22224 6.76654 7.33162 8.84644 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.002982 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.832108 B = 9386.124888 C =10627.308475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.147 3.853 11 N -0.647 5.647 12 C 0.575 3.425 13 S -0.695 6.695 14 N -0.622 5.622 15 C 0.145 3.855 16 C -0.067 4.067 17 C -0.033 4.033 18 Cl -0.060 7.060 19 C -0.086 4.086 20 C -0.085 4.085 21 C -0.044 4.044 22 Cl -0.051 7.051 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.414 0.586 29 H 0.424 0.576 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -25.618 0.380 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.024 3.976 11 N -0.272 5.272 12 C 0.212 3.788 13 S -0.568 6.568 14 N -0.251 5.251 15 C 0.050 3.950 16 C -0.090 4.090 17 C -0.062 4.062 18 Cl -0.031 7.031 19 C -0.105 4.105 20 C -0.104 4.104 21 C -0.074 4.074 22 Cl -0.022 7.022 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.253 0.747 29 H 0.266 0.734 30 H 0.155 0.845 31 H 0.191 0.809 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.281 -25.286 0.379 25.321 hybrid contribution -1.438 1.387 -0.019 1.998 sum -0.157 -23.899 0.360 23.902 Atomic orbital electron populations 1.70030 1.07475 1.28105 1.50957 1.25804 0.95726 1.02953 0.94378 0.85546 0.78342 0.78310 0.79196 1.19371 1.20765 1.19332 1.21371 0.93754 0.91545 1.51608 0.91976 1.19179 0.94187 0.91536 0.96656 1.21763 0.94791 0.78413 1.02593 1.45338 1.10970 1.04419 1.66456 1.21900 0.94816 0.81975 0.80081 1.93576 0.92148 1.94641 1.76386 1.41948 1.10481 1.01670 1.71033 1.16906 0.97318 0.83964 0.96801 1.21035 0.94113 0.96805 0.97062 1.20806 0.94136 0.95156 0.96102 1.98386 1.49584 1.97761 1.57382 1.21378 0.96915 0.98812 0.93430 1.21150 0.94243 0.96150 0.98861 1.21011 0.96306 0.96135 0.93956 1.98396 1.48678 1.98046 1.57100 0.92536 0.97093 0.97004 0.90962 0.91195 0.74688 0.73384 0.84504 0.80864 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.66 13.29 21.45 0.28 -52.37 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -29.10 9.11 25.60 0.23 -28.86 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.03 5.09 29.85 0.15 1.18 16 10 C 0.15 5.71 5.07 86.38 0.44 6.15 16 11 N -0.65 -19.39 5.56 -350.17 -1.95 -21.34 16 12 C 0.57 17.14 7.74 179.06 1.39 18.53 16 13 S -0.70 -26.66 25.28 -56.49 -1.43 -28.09 16 14 N -0.62 -13.88 4.89 -189.92 -0.93 -14.81 16 15 C 0.15 3.23 5.83 38.16 0.22 3.45 16 16 C -0.07 -1.64 7.66 22.41 0.17 -1.47 16 17 C -0.03 -0.67 6.32 22.31 0.14 -0.53 16 18 Cl -0.06 -1.22 28.95 -2.72 -0.08 -1.30 16 19 C -0.09 -1.20 9.83 22.31 0.22 -0.98 16 20 C -0.08 -1.10 9.82 22.27 0.22 -0.89 16 21 C -0.04 -0.78 6.34 22.44 0.14 -0.64 16 22 Cl -0.05 -0.84 28.15 -2.72 -0.08 -0.91 16 23 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.07 2.98 7.99 -2.39 -0.02 2.96 16 27 H 0.07 2.91 7.99 -2.39 -0.02 2.89 16 28 H 0.41 10.04 8.49 -92.71 -0.79 9.25 16 29 H 0.42 6.93 8.43 -92.70 -0.78 6.15 16 30 H 0.14 4.01 6.52 -2.91 -0.02 3.99 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -66.12 323.11 1.26 -64.87 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -0.38 Total: 12.24 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 3.79 Total: -3.01 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.59 Total: -88.53 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -26.66 SS G_CDS: -1.43 Total: -28.09 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.16 Total: -2.22 kcal Total: -66.12 1.26 -64.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201091892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.279 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds