Wall clock time and date at job start Tue Mar 31 2020 12:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47173 * 2 1 4 4 C 1.50699 * 109.46789 * 119.99413 * 2 1 3 5 5 H 1.08007 * 119.99970 * 120.00687 * 4 2 1 6 6 C 1.37880 * 120.00281 * 300.27878 * 4 2 1 7 7 N 1.31512 * 119.99695 * 359.72546 * 6 4 2 8 8 Si 1.86794 * 120.00170 * 179.72499 * 6 4 2 9 9 H 1.48509 * 109.47236 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47434 * 120.00067 * 8 6 4 11 11 H 1.48497 * 109.47282 * 240.00163 * 8 6 4 12 12 N 1.46491 * 109.47437 * 239.99450 * 2 1 3 13 13 C 1.34785 * 119.99796 * 85.00531 * 12 2 1 14 14 S 1.71192 * 119.99936 * 359.97438 * 13 12 2 15 15 N 1.34772 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.39940 * 119.99924 * 175.76891 * 15 13 12 17 17 C 1.38899 * 120.05257 * 45.45747 * 16 15 13 18 18 C 1.38104 * 119.96581 * 180.02562 * 17 16 15 19 19 C 1.38375 * 120.07122 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.94587 * 180.02562 * 19 18 17 21 21 C 1.38483 * 120.10744 * 0.02909 * 19 18 17 22 22 Cl 1.73598 * 119.98482 * 179.97438 * 21 19 18 23 23 C 1.38238 * 120.02896 * 359.67721 * 21 19 18 24 24 H 1.08999 * 109.47917 * 300.00340 * 1 2 3 25 25 H 1.09003 * 109.47045 * 60.00786 * 1 2 3 26 26 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99605 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00629 * 264.99940 * 12 2 1 29 29 H 0.96999 * 120.00348 * 355.75911 * 15 13 12 30 30 H 1.07992 * 120.01748 * 0.02562 * 17 16 15 31 31 H 1.08003 * 119.96455 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.03368 * 180.31531 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6943 -0.2425 2.4828 7 7 0.9382 0.8267 2.6033 8 14 2.3106 -1.1274 4.0080 9 1 3.1362 -2.2939 3.6040 10 1 3.1327 -0.1967 4.8222 11 1 1.1522 -1.5959 4.8105 12 7 2.0183 -0.6907 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 16 1.7395 1.6426 -2.4342 15 7 2.5960 -0.6539 -3.4575 16 6 2.6461 0.0198 -4.6831 17 6 3.1616 1.3079 -4.7482 18 6 3.2097 1.9712 -5.9586 19 6 2.7453 1.3538 -7.1065 20 17 2.8079 2.1905 -8.6264 21 6 2.2306 0.0697 -7.0450 22 17 1.6482 -0.7016 -8.4871 23 6 2.1860 -0.6006 -5.8368 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7002 1.1556 3.4843 28 1 2.2491 -1.6318 -1.1524 29 1 2.8844 -1.5782 -3.4000 30 1 3.5247 1.7904 -3.8529 31 1 3.6102 2.9730 -6.0091 32 1 1.7893 -1.6040 -5.7896 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201172743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:04 Heat of formation + Delta-G solvation = 15.414267 kcal Electronic energy + Delta-G solvation = -18928.208047 eV Core-core repulsion = 15680.060731 eV Total energy + Delta-G solvation = -3248.147316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28843 -39.55963 -37.85478 -37.52824 -36.58968 -34.62739 -32.11154 -31.50958 -29.82778 -27.42438 -25.59821 -24.20526 -23.35700 -22.76928 -19.99169 -19.51548 -18.12325 -17.75476 -17.16311 -16.96464 -16.69008 -15.74520 -15.68056 -15.17406 -14.95406 -14.86359 -14.56128 -13.84906 -13.54191 -13.21970 -12.99941 -12.88024 -12.78362 -12.75080 -12.42285 -12.23021 -12.17307 -12.11007 -12.06323 -11.89089 -11.14395 -10.78674 -10.49484 -10.02653 -9.40467 -8.92776 -8.20050 -8.18069 -6.38214 -0.30134 0.07821 0.47755 0.80834 0.90030 1.14072 1.44365 1.45820 1.55908 1.63721 2.37399 2.42763 2.69992 3.11846 3.61071 3.98489 4.08336 4.12332 4.50920 4.61768 4.72960 4.86849 4.99353 5.03024 5.09580 5.17860 5.27688 5.50094 5.54509 5.73779 5.90022 5.95841 6.11312 6.51216 6.74892 7.32440 8.85587 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.033433 B = 0.002797 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.294233 B =10009.922640 C =10365.805191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.044 0.956 4 C -0.555 4.555 5 H 0.075 0.925 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.970 3.030 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.631 5.631 13 C 0.573 3.427 14 S -0.714 6.714 15 N -0.622 5.622 16 C 0.143 3.857 17 C -0.061 4.061 18 C -0.095 4.095 19 C -0.032 4.032 20 Cl -0.049 7.049 21 C -0.036 4.036 22 Cl -0.044 7.044 23 C -0.097 4.097 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.410 0.590 29 H 0.428 0.572 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -6.427 -18.990 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.062 0.938 4 C -0.593 4.593 5 H 0.093 0.907 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.795 3.205 9 H -0.184 1.184 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.254 5.254 13 C 0.209 3.791 14 S -0.584 6.584 15 N -0.252 5.252 16 C 0.049 3.951 17 C -0.085 4.085 18 C -0.115 4.115 19 C -0.060 4.060 20 Cl -0.020 7.020 21 C -0.065 4.065 22 Cl -0.015 7.015 23 C -0.119 4.119 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.248 0.752 29 H 0.270 0.730 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.865 -5.168 -18.939 20.225 hybrid contribution 0.334 -1.598 0.909 1.868 sum 5.199 -6.765 -18.029 19.946 Atomic orbital electron populations 1.21869 0.97222 0.99277 1.00865 1.18985 0.91810 0.93749 0.78595 0.93845 1.21488 1.33305 1.14007 0.90547 0.90726 1.25676 0.94737 0.95484 1.02036 1.70055 1.36242 1.23522 1.24727 0.85333 0.78040 0.78515 0.78653 1.18387 1.21092 1.20643 1.45691 1.58096 1.13697 1.07881 1.21840 0.80826 0.93975 0.82465 1.93418 1.74989 0.98092 1.91931 1.41863 1.62841 1.16035 1.04456 1.17296 1.00524 0.93859 0.83452 1.21652 0.95119 0.93461 0.98223 1.20984 1.00081 1.01397 0.89068 1.20897 1.03693 0.92515 0.88904 1.98380 1.96937 1.77419 1.29267 1.20349 1.03993 0.92765 0.89358 1.98383 1.86936 1.80430 1.35769 1.20819 0.99956 1.02255 0.88859 0.91112 0.95459 0.94639 0.92405 0.75163 0.72977 0.83704 0.82379 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 9.21 71.98 0.66 -5.57 16 2 C 0.27 12.49 2.32 44.24 0.10 12.59 16 3 H 0.04 2.40 6.82 -2.39 -0.02 2.38 16 4 C -0.56 -26.73 8.73 25.60 0.22 -26.51 16 5 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -49.38 11.31 21.45 0.24 -49.14 16 8 Si 0.97 39.60 29.54 68.60 2.03 41.63 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 12 N -0.63 -21.87 5.07 -333.18 -1.69 -23.56 16 13 C 0.57 19.13 7.81 179.05 1.40 20.53 16 14 S -0.71 -30.81 23.65 -56.49 -1.34 -32.14 16 15 N -0.62 -14.33 5.32 -189.97 -1.01 -15.34 16 16 C 0.14 3.37 5.93 38.15 0.23 3.60 16 17 C -0.06 -1.59 7.87 22.40 0.18 -1.41 16 18 C -0.09 -2.13 9.82 22.27 0.22 -1.92 16 19 C -0.03 -0.69 6.32 22.36 0.14 -0.55 16 20 Cl -0.05 -0.98 27.95 -2.72 -0.08 -1.06 16 21 C -0.04 -0.74 6.32 22.33 0.14 -0.60 16 22 Cl -0.04 -0.83 27.95 -2.72 -0.08 -0.91 16 23 C -0.10 -1.90 9.75 22.41 0.22 -1.68 16 24 H 0.07 3.73 6.06 -2.39 -0.01 3.71 16 25 H 0.03 1.26 7.48 -2.39 -0.02 1.24 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.41 11.12 8.56 -92.71 -0.79 10.33 16 29 H 0.43 6.25 8.84 -92.71 -0.82 5.43 16 30 H 0.15 4.48 6.11 -7.87 -0.05 4.43 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -62.33 315.67 1.59 -60.74 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.45 Total: 19.73 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 3.96 Total: 0.06 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.46 Total: -88.04 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 16 Polarization: -30.81 SS G_CDS: -1.34 Total: -32.14 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.15 Total: -1.96 kcal Total: -62.33 1.59 -60.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201172743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.150 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds