Wall clock time and date at job start Tue Mar 31 2020 11:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99571 * 2 1 4 4 C 1.50702 * 109.46729 * 269.99489 * 3 2 1 5 5 H 1.07994 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00088 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47350 * 119.99545 * 8 6 4 11 11 H 1.48496 * 109.47113 * 239.99658 * 8 6 4 12 12 C 1.39669 * 119.99748 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07711 * 0.02562 * 12 2 1 14 14 C 1.38102 * 119.92398 * 179.72013 * 13 12 2 15 15 C 1.38284 * 120.07730 * 0.28542 * 14 13 12 16 16 C 1.50702 * 119.92910 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47147 * 89.99455 * 16 15 14 18 18 C 1.46840 * 111.00173 * 45.79375 * 17 16 15 19 19 C 1.53036 * 109.52575 * 185.83724 * 18 17 16 20 20 C 1.53114 * 109.27859 * 300.81927 * 19 18 17 21 21 C 1.52998 * 109.52579 * 177.56008 * 20 19 18 22 22 N 1.46894 * 109.47251 * 65.31624 * 21 20 19 23 23 C 1.53120 * 109.16069 * 57.65308 * 20 19 18 24 24 C 1.46853 * 110.99502 * 170.00037 * 17 16 15 25 25 C 1.38287 * 120.14784 * 359.96989 * 15 14 13 26 26 C 1.38104 * 120.07457 * 0.05084 * 25 15 14 27 27 H 1.08997 * 109.47417 * 270.00230 * 1 2 3 28 28 H 1.09009 * 109.47082 * 30.00401 * 1 2 3 29 29 H 1.09003 * 109.47201 * 150.00150 * 1 2 3 30 30 H 1.08994 * 109.47775 * 29.99713 * 3 2 1 31 31 H 1.09002 * 109.46961 * 150.00104 * 3 2 1 32 32 H 0.97002 * 119.99773 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.04044 * 0.02562 * 13 12 2 34 34 H 1.08008 * 119.96515 * 180.25651 * 14 13 12 35 35 H 1.08998 * 109.46900 * 209.99776 * 16 15 14 36 36 H 1.09005 * 109.46585 * 329.99345 * 16 15 14 37 37 H 1.09004 * 109.46379 * 305.85572 * 18 17 16 38 38 H 1.09009 * 109.46257 * 65.81822 * 18 17 16 39 39 H 1.09001 * 109.50304 * 180.87737 * 19 18 17 40 40 H 1.09001 * 109.50036 * 60.76023 * 19 18 17 41 41 H 1.09008 * 109.52660 * 297.75138 * 20 19 18 42 42 H 1.09004 * 109.47552 * 185.32355 * 21 20 19 43 43 H 1.09003 * 109.46839 * 305.31360 * 21 20 19 44 44 H 1.00895 * 110.99889 * 56.04834 * 22 21 20 45 45 H 1.00901 * 111.00067 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.50439 * 182.40781 * 23 20 19 47 47 H 1.09000 * 109.53920 * 62.30710 * 23 20 19 48 48 H 1.08993 * 109.46524 * 294.17676 * 24 17 16 49 49 H 1.08997 * 109.46140 * 54.15821 * 24 17 16 50 50 H 1.08007 * 119.96182 * 180.02562 * 25 15 14 51 51 H 1.07997 * 120.03657 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5540 3.6177 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4168 -4.3674 10 1 2.8004 4.7380 -3.6669 11 1 4.9001 3.5247 -3.6680 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1640 -3.6076 -0.0048 15 6 3.5468 -3.6059 -0.0041 16 6 4.3004 -4.9109 -0.0093 17 7 4.5458 -5.3292 -1.3960 18 6 5.0342 -4.2059 -2.2059 19 6 5.1397 -4.6387 -3.6700 20 6 6.1005 -5.8259 -3.7782 21 6 6.1635 -6.3021 -5.2308 22 7 6.7605 -5.2509 -6.0652 23 6 5.5948 -6.9645 -2.8879 24 6 5.4762 -6.4642 -1.4464 25 6 4.2398 -2.4092 0.0012 26 6 3.5524 -1.2114 0.0070 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0285 0.5137 31 1 3.1499 1.1385 0.5138 32 1 4.0314 4.4432 -0.8505 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 -0.0090 35 1 5.2525 -4.7827 0.5054 36 1 3.7110 -5.6727 0.5011 37 1 4.3398 -3.3697 -2.1235 38 1 6.0164 -3.8988 -1.8462 39 1 5.5171 -3.8094 -4.2683 40 1 4.1554 -4.9327 -4.0343 41 1 7.0945 -5.5213 -3.4503 42 1 6.7725 -7.2040 -5.2915 43 1 5.1561 -6.5195 -5.5858 44 1 7.6698 -4.9858 -5.7173 45 1 6.8129 -5.5412 -7.0302 46 1 6.2974 -7.7969 -2.9275 47 1 4.6178 -7.2958 -3.2397 48 1 6.4561 -6.1467 -1.0904 49 1 5.1026 -7.2685 -0.8127 50 1 5.3199 -2.4113 0.0013 51 1 4.0943 -0.2772 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205047558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:20 Heat of formation + Delta-G solvation = 26.420520 kcal Electronic energy + Delta-G solvation = -26930.681071 eV Core-core repulsion = 23443.032876 eV Total energy + Delta-G solvation = -3487.648195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.65767 -38.59429 -36.31419 -35.08434 -32.83590 -32.28524 -30.82176 -30.38135 -29.63886 -27.78312 -26.74918 -25.02945 -23.80127 -23.19545 -22.16288 -21.46833 -21.18092 -19.71215 -19.48409 -16.63143 -16.46928 -16.31777 -15.40218 -15.30595 -15.15107 -14.86562 -14.65273 -14.56316 -14.14846 -13.98332 -13.68197 -13.41560 -13.03536 -12.84701 -12.80487 -12.72919 -12.41285 -12.15266 -12.06309 -11.65990 -11.56006 -11.37901 -11.23933 -11.15527 -10.91051 -10.81255 -10.67647 -10.60591 -10.31378 -10.25528 -10.19010 -9.84420 -9.72517 -8.88782 -8.79262 -8.49935 -8.24091 -8.12297 -6.44367 -6.00405 -4.16416 2.12541 2.24064 3.26672 3.34917 3.40546 4.05432 4.17606 4.28533 4.42745 4.62881 4.66322 4.77722 4.89462 5.15103 5.22604 5.27078 5.34352 5.35841 5.37344 5.50913 5.52728 5.61587 5.63656 5.66443 5.74527 5.81778 5.84693 5.90411 5.96938 6.02460 6.04493 6.09823 6.26522 6.30273 6.37665 6.41591 6.45351 6.49565 6.66961 6.89602 6.95525 7.04290 7.18626 7.20008 7.22485 7.29497 7.30307 7.39198 7.61848 7.82402 8.16621 8.28148 8.50390 8.93259 9.50659 10.96460 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.003558 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.893882 B = 7868.089599 C = 9693.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.243 3.757 13 C -0.223 4.223 14 C -0.052 4.052 15 C -0.173 4.173 16 C 0.111 3.889 17 N -0.532 5.532 18 C 0.051 3.949 19 C -0.100 4.100 20 C -0.087 4.087 21 C 0.068 3.932 22 N -0.849 5.849 23 C -0.109 4.109 24 C 0.057 3.943 25 C -0.066 4.066 26 C -0.188 4.188 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.072 0.928 44 H 0.339 0.661 45 H 0.339 0.661 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.028 0.972 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -20.242 -2.698 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.071 4.071 15 C -0.176 4.176 16 C -0.016 4.016 17 N -0.257 5.257 18 C -0.077 4.077 19 C -0.138 4.138 20 C -0.106 4.106 21 C -0.063 4.063 22 N -0.378 5.378 23 C -0.148 4.148 24 C -0.072 4.072 25 C -0.086 4.086 26 C -0.210 4.210 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.090 0.910 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.046 0.954 49 H 0.089 0.911 50 H 0.124 0.876 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.703 -19.560 -2.628 19.920 hybrid contribution 1.760 0.055 -0.864 1.962 sum 4.463 -19.504 -3.492 20.311 Atomic orbital electron populations 1.21474 0.81499 1.01946 0.99664 1.47101 1.04391 1.04626 1.75980 1.19287 0.92058 0.78766 0.97003 1.21624 1.36218 1.06377 0.92677 0.92161 1.24960 0.95422 0.96286 0.97388 1.69942 1.38430 1.14380 1.30700 0.86482 0.78066 0.78472 0.84728 1.19638 1.20964 1.20836 1.17947 0.91455 0.85999 0.91054 1.20565 0.99031 0.91395 1.13646 1.20484 0.93133 0.96559 0.96937 1.19144 0.93685 0.93333 1.11457 1.20830 0.97642 0.94619 0.88482 1.62083 1.45494 1.07370 1.10781 1.22250 0.98561 0.94014 0.92843 1.21523 0.99226 0.97479 0.95595 1.21231 0.99451 0.96308 0.93628 1.21836 0.99484 0.91621 0.93368 1.58645 1.29775 1.43397 1.06032 1.21588 1.01551 0.97015 0.94620 1.22032 0.94158 0.94169 0.96797 1.20669 0.98402 0.91716 0.97787 1.20841 0.92710 0.98619 1.08846 0.94636 0.91471 0.92646 0.95228 0.94659 0.92727 0.86906 0.87247 0.95090 0.90888 0.89056 0.95643 0.90690 0.91568 0.91963 0.96051 0.90979 0.84869 0.84861 0.92139 0.91016 0.95400 0.91086 0.87582 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.85 0.61 2.35 16 2 N -0.62 -13.28 2.99 -181.00 -0.54 -13.82 16 3 C 0.25 6.26 4.92 -5.19 -0.03 6.24 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 13 C -0.22 -3.93 9.21 -39.38 -0.36 -4.30 16 14 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 15 C -0.17 -2.72 4.13 -104.59 -0.43 -3.15 16 16 C 0.11 1.46 5.43 -4.97 -0.03 1.43 16 17 N -0.53 -6.84 4.80 -236.11 -1.13 -7.97 16 18 C 0.05 0.71 4.57 -3.84 -0.02 0.69 16 19 C -0.10 -1.26 5.24 -26.65 -0.14 -1.40 16 20 C -0.09 -0.87 2.40 -90.50 -0.22 -1.09 16 21 C 0.07 0.60 6.18 -3.83 -0.02 0.57 16 22 N -0.85 -7.39 9.14 -10.37 -0.09 -7.48 16 23 C -0.11 -1.02 5.38 -26.65 -0.14 -1.16 16 24 C 0.06 0.59 5.42 -3.83 -0.02 0.57 16 25 C -0.07 -1.14 7.78 -39.61 -0.31 -1.45 16 26 C -0.19 -3.81 9.21 -39.38 -0.36 -4.17 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.21 8.07 -51.92 -0.42 0.80 16 29 H 0.05 0.88 6.20 -51.93 -0.32 0.55 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.03 0.40 8.02 -51.93 -0.42 -0.02 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.09 1.51 5.64 -51.93 -0.29 1.22 16 38 H 0.03 0.36 8.14 -51.92 -0.42 -0.07 16 39 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.34 2.64 8.99 -39.29 -0.35 2.29 16 45 H 0.34 2.37 9.08 -39.29 -0.36 2.01 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 50 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 51 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -29.00 394.31 -11.92 -40.92 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.99 Total: 5.91 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.82 Total: -14.93 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -1.03 Total: -54.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.00 -11.92 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205047558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.341 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds