Wall clock time and date at job start Tue Mar 31 2020 11:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99571 * 2 1 4 4 C 1.50702 * 109.46729 * 269.99489 * 3 2 1 5 5 H 1.07994 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00088 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47350 * 119.99545 * 8 6 4 11 11 H 1.48496 * 109.47113 * 239.99658 * 8 6 4 12 12 C 1.39669 * 119.99748 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07711 * 0.02562 * 12 2 1 14 14 C 1.38102 * 119.92398 * 179.72013 * 13 12 2 15 15 C 1.38284 * 120.07730 * 0.28542 * 14 13 12 16 16 C 1.50702 * 119.92910 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47147 * 89.99455 * 16 15 14 18 18 C 1.46840 * 111.00173 * 45.79375 * 17 16 15 19 19 C 1.53036 * 109.52575 * 185.83724 * 18 17 16 20 20 C 1.53114 * 109.27859 * 300.81927 * 19 18 17 21 21 C 1.52998 * 109.52579 * 177.56008 * 20 19 18 22 22 N 1.46894 * 109.47251 * 65.31624 * 21 20 19 23 23 C 1.53120 * 109.16069 * 57.65308 * 20 19 18 24 24 C 1.46853 * 110.99502 * 170.00037 * 17 16 15 25 25 C 1.38287 * 120.14784 * 359.96989 * 15 14 13 26 26 C 1.38104 * 120.07457 * 0.05084 * 25 15 14 27 27 H 1.08997 * 109.47417 * 270.00230 * 1 2 3 28 28 H 1.09009 * 109.47082 * 30.00401 * 1 2 3 29 29 H 1.09003 * 109.47201 * 150.00150 * 1 2 3 30 30 H 1.08994 * 109.47775 * 29.99713 * 3 2 1 31 31 H 1.09002 * 109.46961 * 150.00104 * 3 2 1 32 32 H 0.97002 * 119.99773 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.04044 * 0.02562 * 13 12 2 34 34 H 1.08008 * 119.96515 * 180.25651 * 14 13 12 35 35 H 1.08998 * 109.46900 * 209.99776 * 16 15 14 36 36 H 1.09005 * 109.46585 * 329.99345 * 16 15 14 37 37 H 1.09004 * 109.46379 * 305.85572 * 18 17 16 38 38 H 1.09009 * 109.46257 * 65.81822 * 18 17 16 39 39 H 1.09001 * 109.50304 * 180.87737 * 19 18 17 40 40 H 1.09001 * 109.50036 * 60.76023 * 19 18 17 41 41 H 1.09008 * 109.52660 * 297.75138 * 20 19 18 42 42 H 1.09004 * 109.47552 * 185.32355 * 21 20 19 43 43 H 1.09003 * 109.46839 * 305.31360 * 21 20 19 44 44 H 1.00895 * 110.99889 * 56.04834 * 22 21 20 45 45 H 1.00901 * 111.00067 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.50439 * 182.40781 * 23 20 19 47 47 H 1.09000 * 109.53920 * 62.30710 * 23 20 19 48 48 H 1.08993 * 109.46524 * 294.17676 * 24 17 16 49 49 H 1.08997 * 109.46140 * 54.15821 * 24 17 16 50 50 H 1.08007 * 119.96182 * 180.02562 * 25 15 14 51 51 H 1.07997 * 120.03657 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5540 3.6177 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4168 -4.3674 10 1 2.8004 4.7380 -3.6669 11 1 4.9001 3.5247 -3.6680 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1640 -3.6076 -0.0048 15 6 3.5468 -3.6059 -0.0041 16 6 4.3004 -4.9109 -0.0093 17 7 4.5458 -5.3292 -1.3960 18 6 5.0342 -4.2059 -2.2059 19 6 5.1397 -4.6387 -3.6700 20 6 6.1005 -5.8259 -3.7782 21 6 6.1635 -6.3021 -5.2308 22 7 6.7605 -5.2509 -6.0652 23 6 5.5948 -6.9645 -2.8879 24 6 5.4762 -6.4642 -1.4464 25 6 4.2398 -2.4092 0.0012 26 6 3.5524 -1.2114 0.0070 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0285 0.5137 31 1 3.1499 1.1385 0.5138 32 1 4.0314 4.4432 -0.8505 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 -0.0090 35 1 5.2525 -4.7827 0.5054 36 1 3.7110 -5.6727 0.5011 37 1 4.3398 -3.3697 -2.1235 38 1 6.0164 -3.8988 -1.8462 39 1 5.5171 -3.8094 -4.2683 40 1 4.1554 -4.9327 -4.0343 41 1 7.0945 -5.5213 -3.4503 42 1 6.7725 -7.2040 -5.2915 43 1 5.1561 -6.5195 -5.5858 44 1 7.6698 -4.9858 -5.7173 45 1 6.8129 -5.5412 -7.0302 46 1 6.2974 -7.7969 -2.9275 47 1 4.6178 -7.2958 -3.2397 48 1 6.4561 -6.1467 -1.0904 49 1 5.1026 -7.2685 -0.8127 50 1 5.3199 -2.4113 0.0013 51 1 4.0943 -0.2772 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205047558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:19 Heat of formation + Delta-G solvation = 8.750360 kcal Electronic energy + Delta-G solvation = -26931.447307 eV Core-core repulsion = 23443.032876 eV Total energy + Delta-G solvation = -3488.414430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.84919 -39.79765 -37.60246 -36.22157 -34.77302 -33.32856 -31.99498 -31.62861 -30.92555 -29.60234 -27.89279 -26.46559 -25.19609 -24.32454 -23.38208 -22.96366 -22.14934 -20.96821 -20.58412 -18.64426 -18.08705 -17.22692 -16.90109 -16.42400 -16.23397 -16.18332 -15.63609 -15.51094 -15.40591 -15.31381 -15.19911 -14.63551 -14.52116 -14.29018 -14.06311 -13.72416 -13.68905 -13.32104 -13.21185 -13.13186 -13.01683 -12.81620 -12.70888 -12.56581 -12.52263 -12.21056 -12.08619 -11.94436 -11.71613 -11.51971 -11.40147 -11.17957 -11.16264 -10.65265 -10.38097 -9.65710 -9.52129 -9.15944 -8.36602 -7.79503 -6.38125 0.69764 0.83273 1.34943 1.36941 1.49278 2.33730 2.63199 2.93048 3.05365 3.35113 3.62232 3.84131 3.93374 3.99156 4.05112 4.21120 4.24768 4.37202 4.39660 4.45145 4.51364 4.53428 4.64490 4.64957 4.69578 4.71675 4.78605 4.81799 4.86822 4.91885 4.94684 5.00498 5.03362 5.06120 5.12339 5.15768 5.20351 5.30662 5.32747 5.38223 5.54684 5.58938 5.66554 5.69759 5.91495 6.06673 6.17494 6.21215 6.28631 6.33182 6.49764 6.62139 6.82512 6.93467 7.33888 8.82555 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.003558 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.893882 B = 7868.089599 C = 9693.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.215 3.785 13 C -0.218 4.218 14 C -0.048 4.048 15 C -0.159 4.159 16 C 0.113 3.887 17 N -0.536 5.536 18 C 0.057 3.943 19 C -0.094 4.094 20 C -0.082 4.082 21 C 0.072 3.928 22 N -0.864 5.864 23 C -0.104 4.104 24 C 0.054 3.946 25 C -0.065 4.065 26 C -0.215 4.215 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.066 0.934 44 H 0.344 0.656 45 H 0.349 0.651 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.028 0.972 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 -23.540 -3.544 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.110 3.890 13 C -0.240 4.240 14 C -0.067 4.067 15 C -0.162 4.162 16 C -0.014 4.014 17 N -0.261 5.261 18 C -0.071 4.071 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.059 4.059 22 N -0.395 5.395 23 C -0.142 4.142 24 C -0.073 4.073 25 C -0.085 4.085 26 C -0.238 4.238 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.156 0.844 45 H 0.162 0.838 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.107 0.893 50 H 0.132 0.868 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.693 -22.899 -3.473 23.316 hybrid contribution 1.808 0.968 -0.573 2.129 sum 4.501 -21.931 -4.045 22.750 Atomic orbital electron populations 1.21605 0.79379 1.02521 1.00989 1.46970 1.05655 1.03717 1.77648 1.18768 0.91045 0.80273 0.95401 1.21802 1.36316 1.06478 0.93324 0.93387 1.25756 0.95074 0.96303 1.01407 1.70042 1.39022 1.14837 1.32704 0.85482 0.78076 0.78231 0.79766 1.19607 1.19803 1.20259 1.18200 0.91537 0.86529 0.92771 1.20812 1.00091 0.90685 1.12454 1.20873 0.93281 0.97205 0.95383 1.19474 0.94066 0.93898 1.08744 1.20881 0.97911 0.93538 0.89068 1.62103 1.46439 1.07367 1.10202 1.22090 0.97288 0.93679 0.94085 1.21421 0.99349 0.98191 0.94272 1.21182 0.98477 0.95515 0.94909 1.21766 0.99559 0.92183 0.92376 1.58635 1.30236 1.43771 1.06809 1.21570 1.02034 0.97152 0.93472 1.22159 0.93678 0.93479 0.98009 1.20764 0.98875 0.91485 0.97332 1.20719 0.93256 0.98321 1.11515 0.92844 0.92534 0.90370 0.97226 0.97171 0.92384 0.84907 0.83964 0.94543 0.88615 0.92283 0.96203 0.92269 0.92636 0.92063 0.94283 0.91554 0.84358 0.83809 0.89774 0.91247 0.95327 0.89271 0.86800 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.48 10.19 127.77 1.30 4.78 16 2 N -0.63 -28.33 2.99 -726.55 -2.17 -30.50 16 3 C 0.27 14.30 4.92 85.63 0.42 14.72 16 4 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.79 5.46 84.65 0.46 1.25 16 7 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 8 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.21 8.97 6.55 38.21 0.25 9.22 16 13 C -0.22 -7.38 9.21 22.40 0.21 -7.18 16 14 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 15 C -0.16 -4.74 4.13 -19.84 -0.08 -4.83 16 16 C 0.11 2.63 5.43 85.56 0.46 3.10 16 17 N -0.54 -12.46 4.80 -900.91 -4.32 -16.79 16 18 C 0.06 1.54 4.57 86.33 0.39 1.93 16 19 C -0.09 -2.31 5.24 30.64 0.16 -2.15 16 20 C -0.08 -1.47 2.40 -10.72 -0.03 -1.50 16 21 C 0.07 1.11 6.18 86.30 0.53 1.64 16 22 N -0.86 -13.83 9.14 -186.73 -1.71 -15.54 16 23 C -0.10 -1.60 5.38 30.65 0.16 -1.43 16 24 C 0.05 0.96 5.42 86.33 0.47 1.42 16 25 C -0.07 -2.30 7.78 22.25 0.17 -2.12 16 26 C -0.22 -9.25 9.21 22.40 0.21 -9.05 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 29 H 0.08 2.37 6.20 -2.39 -0.01 2.36 16 30 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 31 H 0.01 0.60 6.18 -2.39 -0.01 0.58 16 32 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.13 3.91 6.14 -2.91 -0.02 3.89 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.04 0.83 8.02 -2.39 -0.02 0.81 16 36 H 0.10 1.87 8.08 -2.38 -0.02 1.85 16 37 H 0.06 1.98 5.64 -2.39 -0.01 1.97 16 38 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.06 1.61 7.84 -2.39 -0.02 1.59 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.34 4.90 8.99 -89.70 -0.81 4.09 16 45 H 0.35 4.35 9.08 -89.69 -0.81 3.54 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 50 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 51 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 Total: -1.00 -65.17 394.31 -1.05 -66.22 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.71 Total: 26.51 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.56 Total: -22.14 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -7.92 Total: -117.58 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.17 -1.05 -66.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205047558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.971 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds