Wall clock time and date at job start Tue Mar 31 2020 11:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46508 * 119.99994 * 2 1 4 4 C 1.50701 * 109.47026 * 269.99942 * 3 2 1 5 5 H 1.07991 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99823 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00299 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99966 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.46959 * 90.00462 * 8 6 4 10 10 H 1.48501 * 109.47315 * 209.99986 * 8 6 4 11 11 H 1.48499 * 109.47625 * 330.00572 * 8 6 4 12 12 C 1.39677 * 120.00339 * 179.97438 * 2 1 3 13 13 C 1.38912 * 120.07048 * 0.02562 * 12 2 1 14 14 C 1.38099 * 119.92393 * 180.02562 * 13 12 2 15 15 C 1.38285 * 120.07607 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.92896 * 179.71980 * 15 14 13 17 17 N 1.46902 * 109.46916 * 89.99734 * 16 15 14 18 18 C 1.47804 * 110.99911 * 66.05243 * 17 16 15 19 19 C 1.45865 * 112.91809 * 153.86797 * 18 17 16 20 20 C 1.54497 * 111.59464 * 61.32620 * 19 18 17 21 21 C 1.50468 * 108.85122 * 282.80840 * 20 19 18 22 22 H 1.08999 * 108.76904 * 331.23361 * 21 20 19 23 23 N 1.46903 * 108.77087 * 212.95405 * 21 20 19 24 24 C 1.54288 * 113.03678 * 92.15657 * 21 20 19 25 25 C 1.44263 * 111.00332 * 304.06599 * 17 16 15 26 26 C 1.38288 * 120.14912 * 359.97438 * 15 14 13 27 27 C 1.38107 * 120.07582 * 0.02562 * 26 15 14 28 28 H 1.08997 * 109.47159 * 270.00248 * 1 2 3 29 29 H 1.09004 * 109.46853 * 30.00227 * 1 2 3 30 30 H 1.09004 * 109.46926 * 149.99463 * 1 2 3 31 31 H 1.08994 * 109.46973 * 30.00039 * 3 2 1 32 32 H 1.09004 * 109.47149 * 149.99742 * 3 2 1 33 33 H 0.96999 * 120.00216 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.03644 * 0.04913 * 13 12 2 35 35 H 1.07995 * 119.96616 * 180.02562 * 14 13 12 36 36 H 1.08994 * 109.47500 * 209.99743 * 16 15 14 37 37 H 1.09002 * 109.47378 * 330.00236 * 16 15 14 38 38 H 1.09001 * 108.79206 * 274.75016 * 18 17 16 39 39 H 1.09001 * 108.79718 * 32.97618 * 18 17 16 40 40 H 1.09007 * 109.05216 * 181.87359 * 19 18 17 41 41 H 1.09000 * 109.05404 * 300.84942 * 19 18 17 42 42 H 1.09001 * 109.57830 * 42.61217 * 20 19 18 43 43 H 1.08998 * 109.57610 * 162.87144 * 20 19 18 44 44 H 1.00906 * 111.00203 * 59.99437 * 23 21 20 45 45 H 1.00895 * 111.00360 * 183.95392 * 23 21 20 46 46 H 1.08996 * 108.92257 * 79.02217 * 24 21 20 47 47 H 1.08999 * 108.91942 * 197.58530 * 24 21 20 48 48 H 1.08995 * 108.97961 * 339.95485 * 25 17 16 49 49 H 1.09005 * 108.97917 * 98.66330 * 25 17 16 50 50 H 1.07997 * 119.96260 * 179.97438 * 26 15 14 51 51 H 1.07996 * 120.03841 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3466 3.2569 -2.9126 8 14 3.7338 3.9287 -0.2529 9 1 5.1070 3.5069 0.1237 10 1 3.7498 5.3554 -0.6647 11 1 2.8274 3.7596 0.9112 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0016 15 6 3.5469 -3.6059 0.0032 16 6 4.3005 -4.9109 0.0108 17 7 4.5468 -5.3420 -1.3718 18 6 5.4640 -4.4105 -2.0616 19 6 6.2086 -5.0440 -3.1441 20 6 5.2659 -5.5850 -4.2421 21 6 4.6469 -6.8696 -3.7618 22 1 5.3359 -7.3536 -3.0696 23 7 4.4383 -7.7543 -4.9158 24 6 3.2943 -6.6589 -3.0500 25 6 3.3120 -5.4370 -2.1116 26 6 4.2399 -2.4092 0.0032 27 6 3.5525 -1.2113 0.0022 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1385 0.5139 33 1 3.8234 4.0828 -3.0898 34 1 0.3904 -2.4156 -0.0007 35 1 1.6260 -4.5440 0.0012 36 1 5.2522 -4.7780 0.5250 37 1 3.7108 -5.6680 0.5278 38 1 4.8826 -3.5847 -2.4717 39 1 6.1718 -4.0119 -1.3348 40 1 6.8862 -4.3130 -3.5853 41 1 6.7922 -5.8705 -2.7385 42 1 4.4820 -4.8548 -4.4429 43 1 5.8348 -5.7700 -5.1533 44 1 5.3124 -7.9613 -5.3755 45 1 3.9648 -8.6018 -4.6409 46 1 2.5179 -6.5161 -3.8015 47 1 3.0596 -7.5491 -2.4665 48 1 2.4829 -5.5178 -1.4087 49 1 3.1842 -4.5320 -2.7057 50 1 5.3199 -2.4113 0.0049 51 1 4.0944 -0.2771 0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205117567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:24 Heat of formation + Delta-G solvation = 41.289404 kcal Electronic energy + Delta-G solvation = -27405.707769 eV Core-core repulsion = 23918.704338 eV Total energy + Delta-G solvation = -3487.003432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98852 -38.66266 -36.45828 -34.98885 -32.99500 -32.61909 -30.98149 -30.56043 -29.33444 -28.34326 -26.85907 -25.24843 -24.47567 -23.43615 -22.31316 -21.43316 -20.43261 -19.70875 -19.23321 -16.98247 -16.69394 -16.24502 -16.11735 -15.43155 -15.11960 -14.94883 -14.84751 -14.36692 -13.99551 -13.87803 -13.77989 -13.52365 -13.29564 -13.18875 -12.86532 -12.63281 -12.40335 -12.01015 -11.86470 -11.74430 -11.63407 -11.50960 -11.18298 -11.15796 -10.92012 -10.79158 -10.69269 -10.64280 -10.62305 -10.35599 -10.28290 -10.07716 -9.63310 -8.96771 -8.78199 -8.69753 -8.39002 -8.21740 -6.47481 -6.18252 -4.18679 1.97935 2.10056 3.18251 3.26271 3.27001 3.98689 4.02709 4.28561 4.33150 4.46071 4.81054 4.88352 5.04809 5.10887 5.12687 5.24391 5.31139 5.33287 5.43932 5.47870 5.50381 5.54547 5.71174 5.75909 5.80721 5.87715 5.89826 5.92812 5.95536 6.02159 6.10877 6.13532 6.16634 6.22538 6.24567 6.26502 6.31292 6.39648 6.47012 6.67937 6.69852 6.92406 6.98415 7.06684 7.08903 7.20387 7.28722 7.32987 7.44807 7.49258 7.98551 8.27655 8.46704 8.88886 9.41321 10.94713 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.003312 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.635052 B = 8452.041732 C = 9175.124167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.221 3.779 4 C -0.536 4.536 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.242 3.758 13 C -0.218 4.218 14 C -0.063 4.063 15 C -0.207 4.207 16 C 0.108 3.892 17 N -0.522 5.522 18 C 0.052 3.948 19 C -0.113 4.113 20 C -0.110 4.110 21 C 0.104 3.896 22 H 0.038 0.962 23 N -0.855 5.855 24 C -0.104 4.104 25 C 0.055 3.945 26 C -0.061 4.061 27 C -0.187 4.187 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.337 0.663 45 H 0.336 0.664 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.046 0.954 50 H 0.109 0.891 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -19.239 3.687 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.316 5.316 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.136 3.864 13 C -0.241 4.241 14 C -0.083 4.083 15 C -0.211 4.211 16 C -0.020 4.020 17 N -0.244 5.244 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.007 4.007 22 H 0.056 0.944 23 N -0.385 5.385 24 C -0.143 4.143 25 C -0.074 4.074 26 C -0.081 4.081 27 C -0.210 4.210 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.128 0.872 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.593 -18.751 3.302 19.106 hybrid contribution 0.502 0.978 0.964 1.462 sum 2.095 -17.773 4.267 18.397 Atomic orbital electron populations 1.21499 0.80969 1.02363 0.99726 1.46733 1.04447 1.03951 1.76485 1.19663 0.91888 0.80674 0.97835 1.21460 1.37062 1.07330 0.91567 0.90605 1.24897 0.95382 0.97227 0.95475 1.69898 1.41115 1.23487 1.18646 0.86917 0.79920 0.80245 0.83047 1.19898 1.20904 1.19032 1.17916 0.91435 0.85886 0.91213 1.20567 0.99096 0.91361 1.13036 1.20573 0.93280 0.96474 0.97931 1.20070 0.94071 0.95506 1.11493 1.21078 0.99139 0.92443 0.89305 1.62016 1.12641 1.47773 1.01955 1.21017 0.96231 0.93949 0.96372 1.20591 0.98045 1.00794 0.95746 1.21377 0.98834 0.96993 0.97623 1.21041 0.96286 0.93408 0.89926 0.94445 1.58929 1.28384 1.20989 1.30161 1.21984 0.96667 0.98152 0.97475 1.21894 0.92096 0.97314 0.96105 1.20675 0.98527 0.91569 0.97334 1.20826 0.92658 0.98687 1.08808 0.94496 0.91219 0.92402 0.95422 0.95538 0.92465 0.86793 0.87345 0.90766 0.90767 0.93654 0.91680 0.91588 0.91826 0.91517 0.91887 0.85063 0.85233 0.91418 0.92715 0.91374 0.93608 0.87248 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.85 0.61 2.28 16 2 N -0.61 -12.60 2.99 -180.99 -0.54 -13.14 16 3 C 0.22 5.14 3.98 -5.19 -0.02 5.12 16 4 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 8 Si 0.87 20.56 27.47 -169.99 -4.67 15.90 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 12 C 0.24 4.72 6.55 -83.79 -0.55 4.17 16 13 C -0.22 -3.64 9.21 -39.38 -0.36 -4.00 16 14 C -0.06 -0.93 8.38 -39.62 -0.33 -1.26 16 15 C -0.21 -2.99 4.34 -104.59 -0.45 -3.44 16 16 C 0.11 1.28 5.32 -4.98 -0.03 1.25 16 17 N -0.52 -6.19 4.45 -241.00 -1.07 -7.26 16 18 C 0.05 0.64 3.75 -6.70 -0.03 0.61 16 19 C -0.11 -1.23 5.53 -29.32 -0.16 -1.39 16 20 C -0.11 -1.22 5.26 -27.21 -0.14 -1.37 16 21 C 0.10 1.08 2.85 -68.30 -0.19 0.88 16 22 H 0.04 0.41 7.38 -51.93 -0.38 0.03 16 23 N -0.85 -7.78 9.14 -5.17 -0.05 -7.82 16 24 C -0.10 -1.12 5.62 -25.50 -0.14 -1.27 16 25 C 0.06 0.67 4.05 -4.67 -0.02 0.65 16 26 C -0.06 -1.00 8.69 -39.61 -0.34 -1.34 16 27 C -0.19 -3.63 9.21 -39.38 -0.36 -3.99 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 31 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 32 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.11 1.73 6.14 -52.49 -0.32 1.40 16 35 H 0.11 1.35 6.97 -52.49 -0.37 0.98 16 36 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 37 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.05 0.67 7.00 -51.93 -0.36 0.31 16 39 H 0.06 0.78 7.09 -51.93 -0.37 0.41 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.66 7.58 -51.93 -0.39 0.27 16 42 H 0.07 0.86 7.15 -51.93 -0.37 0.49 16 43 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 44 H 0.34 2.61 8.85 -39.29 -0.35 2.26 16 45 H 0.34 2.60 8.93 -39.29 -0.35 2.24 16 46 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.81 5.41 -51.93 -0.28 0.53 16 49 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 50 H 0.11 1.59 7.54 -52.49 -0.40 1.19 16 51 H 0.13 2.68 6.14 -52.49 -0.32 2.36 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -29.65 379.44 -11.32 -40.98 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.52 Total: 7.91 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.97 Total: -16.26 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.89 Total: -54.24 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.65 -11.32 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205117567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.267 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds