Wall clock time and date at job start Tue Mar 31 2020 11:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99562 * 2 1 4 4 C 1.50705 * 109.46862 * 269.99539 * 3 2 1 5 5 H 1.07997 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99906 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00007 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99951 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46922 * 90.00140 * 8 6 4 10 10 H 1.48498 * 109.46870 * 210.00051 * 8 6 4 11 11 H 1.48498 * 109.47002 * 330.00098 * 8 6 4 12 12 C 1.39673 * 120.00476 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07019 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92415 * 179.97438 * 13 12 2 15 15 C 1.38285 * 120.07208 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.92419 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47107 * 89.99664 * 16 15 14 18 18 C 1.47632 * 111.00263 * 298.89307 * 17 16 15 19 19 C 1.50815 * 108.05505 * 150.34590 * 18 17 16 20 20 C 1.53822 * 111.62307 * 95.05782 * 19 18 17 21 21 C 1.54171 * 111.96874 * 319.04229 * 20 19 18 22 22 H 1.08997 * 108.85363 * 79.29203 * 21 20 19 23 23 N 1.46898 * 108.85654 * 197.68250 * 21 20 19 24 24 C 1.50756 * 112.61005 * 318.48827 * 21 20 19 25 25 C 1.39777 * 111.00067 * 169.99717 * 17 16 15 26 26 C 1.38286 * 120.15383 * 0.26802 * 15 14 13 27 27 C 1.38108 * 120.06868 * 359.45265 * 26 15 14 28 28 H 1.08997 * 109.47317 * 270.00304 * 1 2 3 29 29 H 1.09003 * 109.47130 * 30.00514 * 1 2 3 30 30 H 1.09003 * 109.46996 * 150.00104 * 1 2 3 31 31 H 1.08996 * 109.47807 * 29.99582 * 3 2 1 32 32 H 1.09005 * 109.47199 * 149.99714 * 3 2 1 33 33 H 0.97007 * 119.99849 * 180.02562 * 7 6 4 34 34 H 1.08000 * 120.03949 * 0.02562 * 13 12 2 35 35 H 1.07993 * 119.96110 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47152 * 329.99751 * 16 15 14 37 37 H 1.09001 * 109.46980 * 209.99852 * 16 15 14 38 38 H 1.08998 * 109.74631 * 269.98721 * 18 17 16 39 39 H 1.09005 * 109.74153 * 30.70867 * 18 17 16 40 40 H 1.09003 * 109.05275 * 334.50317 * 19 18 17 41 41 H 1.09000 * 108.99405 * 215.57036 * 19 18 17 42 42 H 1.08997 * 108.98475 * 198.40350 * 20 19 18 43 43 H 1.09000 * 108.91319 * 79.64060 * 20 19 18 44 44 H 1.00899 * 110.99716 * 303.08829 * 23 21 20 45 45 H 1.00901 * 111.00258 * 67.03657 * 23 21 20 46 46 H 1.09002 * 109.54707 * 333.15715 * 24 21 20 47 47 H 1.08995 * 109.54687 * 212.87885 * 24 21 20 48 48 H 1.09000 * 109.02466 * 309.72205 * 25 17 16 49 49 H 1.09004 * 109.01730 * 68.61908 * 25 17 16 50 50 H 1.07999 * 119.96544 * 179.70952 * 26 15 14 51 51 H 1.08005 * 120.03586 * 180.27157 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6729 7 7 3.3456 3.2573 -2.9128 8 14 3.7336 3.9289 -0.2530 9 1 5.1067 3.5071 0.1237 10 1 3.7494 5.3555 -0.6650 11 1 2.8270 3.7598 0.9109 12 6 2.1635 -1.2095 0.0005 13 6 1.4705 -2.4135 0.0016 14 6 2.1641 -3.6077 0.0016 15 6 3.5470 -3.6058 0.0011 16 6 4.3006 -4.9109 0.0017 17 7 4.5448 -5.3359 -1.3831 18 6 3.2738 -5.5488 -2.1033 19 6 3.5091 -5.2550 -3.5637 20 6 3.8285 -6.5348 -4.3550 21 6 4.7692 -7.4752 -3.5755 22 1 4.1858 -8.0231 -2.8357 23 7 5.3639 -8.4364 -4.5138 24 6 5.8765 -6.7335 -2.8708 25 6 5.4304 -6.4164 -1.4267 26 6 4.2400 -2.4091 0.0061 27 6 3.5525 -1.2113 0.0003 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1386 0.5139 33 1 3.8230 4.0829 -3.0900 34 1 0.3905 -2.4156 0.0016 35 1 1.6260 -4.5440 0.0020 36 1 3.7117 -5.6702 0.5163 37 1 5.2532 -4.7801 0.5150 38 1 2.9511 -6.5830 -1.9830 39 1 2.5110 -4.8764 -1.7106 40 1 4.3445 -4.5612 -3.6569 41 1 2.6146 -4.7926 -3.9811 42 1 4.3029 -6.2600 -5.2971 43 1 2.8976 -7.0606 -4.5672 44 1 4.6490 -8.9521 -5.0046 45 1 5.9845 -7.9734 -5.1609 46 1 6.0872 -5.8040 -3.3997 47 1 6.7731 -7.3528 -2.8477 48 1 6.3095 -6.1798 -0.8272 49 1 4.9401 -7.2947 -1.0066 50 1 5.3200 -2.4112 0.0104 51 1 4.0943 -0.2770 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205117569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:29 Heat of formation + Delta-G solvation = 42.397215 kcal Electronic energy + Delta-G solvation = -27081.365655 eV Core-core repulsion = 23594.410262 eV Total energy + Delta-G solvation = -3486.955393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.95786 -38.81168 -36.48488 -35.20552 -32.71748 -32.62498 -31.18506 -30.57379 -29.21726 -28.35842 -26.73598 -25.50612 -24.13685 -23.63231 -22.05929 -21.51976 -20.79091 -19.60741 -19.44770 -16.94568 -16.70837 -16.33157 -16.09666 -15.68628 -15.16581 -15.10159 -14.52035 -14.45348 -14.28538 -13.96358 -13.69670 -13.40012 -13.18165 -13.09345 -12.92701 -12.55723 -12.40106 -12.09808 -11.97201 -11.71914 -11.63320 -11.47586 -11.43819 -11.25310 -11.04455 -10.86070 -10.75001 -10.63208 -10.48253 -10.40619 -10.24692 -10.06066 -9.58909 -8.92590 -8.88703 -8.66128 -8.29981 -8.09291 -6.41832 -6.14823 -4.14825 2.04731 2.16301 3.21386 3.29096 3.29871 3.97628 4.05635 4.30430 4.31922 4.53712 4.62771 4.71473 4.98843 5.00924 5.10070 5.15532 5.23266 5.28730 5.36175 5.48402 5.48693 5.51343 5.62100 5.66028 5.69537 5.74739 5.80029 5.88546 5.94851 5.95484 5.99597 6.01167 6.13331 6.21083 6.24853 6.31507 6.36754 6.41396 6.53064 6.74052 6.74608 6.90112 6.97720 7.05213 7.15043 7.18796 7.29673 7.49747 7.52999 7.55869 8.03764 8.33328 8.50856 8.92815 9.45038 10.98218 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002979 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.898508 B = 9397.205565 C = 9909.630209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.611 5.611 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.241 3.759 13 C -0.218 4.218 14 C -0.070 4.070 15 C -0.163 4.163 16 C 0.115 3.885 17 N -0.550 5.550 18 C 0.059 3.941 19 C -0.114 4.114 20 C -0.149 4.149 21 C 0.090 3.910 22 H 0.072 0.928 23 N -0.848 5.848 24 C -0.114 4.114 25 C 0.080 3.920 26 C -0.050 4.050 27 C -0.187 4.187 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.337 0.663 45 H 0.338 0.662 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.015 0.985 50 H 0.112 0.888 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -19.917 2.845 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.317 5.317 3 C 0.099 3.901 4 C -0.573 4.573 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.135 3.865 13 C -0.241 4.241 14 C -0.089 4.089 15 C -0.166 4.166 16 C -0.011 4.011 17 N -0.274 5.274 18 C -0.067 4.067 19 C -0.152 4.152 20 C -0.189 4.189 21 C -0.021 4.021 22 H 0.090 0.910 23 N -0.376 5.376 24 C -0.152 4.152 25 C -0.050 4.050 26 C -0.070 4.070 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.033 0.967 50 H 0.130 0.870 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.065 -19.569 3.154 19.850 hybrid contribution -0.615 0.690 -0.010 0.924 sum 0.450 -18.879 3.143 19.144 Atomic orbital electron populations 1.21486 0.81064 1.02298 0.99660 1.46709 1.04377 1.03954 1.76699 1.19656 0.91907 0.80690 0.97803 1.21474 1.36934 1.07258 0.91612 0.90577 1.24899 0.95413 0.97244 0.95455 1.69902 1.41197 1.23509 1.18651 0.86918 0.79955 0.80198 0.83067 1.19869 1.20969 1.19038 1.17903 0.91460 0.85821 0.91349 1.20512 0.98985 0.91296 1.13296 1.20508 0.93379 0.96426 0.98584 1.19169 0.93068 0.93912 1.10408 1.20792 0.98965 0.93491 0.87816 1.58827 1.14775 1.38444 1.15360 1.21943 0.91231 0.99489 0.94076 1.21325 1.02503 0.96939 0.94472 1.22793 0.99569 0.97420 0.99117 1.21416 0.94535 0.91677 0.94467 0.91000 1.59191 1.23714 1.29964 1.24685 1.21553 0.97764 1.00381 0.95493 1.20852 0.96130 0.91456 0.96537 1.20623 0.98775 0.91255 0.96324 1.20831 0.92586 0.98723 1.08843 0.94573 0.91290 0.92437 0.95485 0.95491 0.92510 0.86863 0.87564 0.95039 0.90786 0.94884 0.89294 0.90296 0.92037 0.92466 0.92694 0.85126 0.84933 0.90759 0.90538 0.91154 0.96723 0.86965 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.85 0.61 2.28 16 2 N -0.61 -12.64 2.99 -181.00 -0.54 -13.19 16 3 C 0.22 5.16 3.98 -5.19 -0.02 5.14 16 4 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 8 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 12 C 0.24 4.72 6.55 -83.79 -0.55 4.17 16 13 C -0.22 -3.64 9.21 -39.38 -0.36 -4.00 16 14 C -0.07 -1.03 7.71 -39.61 -0.31 -1.34 16 15 C -0.16 -2.42 4.88 -104.59 -0.51 -2.93 16 16 C 0.12 1.42 5.13 -4.98 -0.03 1.39 16 17 N -0.55 -6.62 3.96 -241.45 -0.96 -7.58 16 18 C 0.06 0.70 5.16 -4.52 -0.02 0.68 16 19 C -0.11 -1.33 5.41 -27.40 -0.15 -1.47 16 20 C -0.15 -1.42 5.45 -25.69 -0.14 -1.56 16 21 C 0.09 0.83 2.73 -68.23 -0.19 0.65 16 22 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 23 N -0.85 -6.89 9.09 -5.11 -0.05 -6.94 16 24 C -0.11 -1.11 5.25 -27.10 -0.14 -1.26 16 25 C 0.08 0.84 4.93 -6.74 -0.03 0.81 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 27 C -0.19 -3.67 9.21 -39.38 -0.36 -4.04 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.87 6.20 -51.93 -0.32 0.55 16 31 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.11 1.71 6.14 -52.49 -0.32 1.38 16 35 H 0.11 1.33 7.54 -52.49 -0.40 0.93 16 36 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 38 H 0.03 0.37 6.66 -51.93 -0.35 0.02 16 39 H 0.09 1.16 4.46 -51.93 -0.23 0.93 16 40 H 0.08 1.06 7.26 -51.93 -0.38 0.69 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.34 2.33 8.99 -39.29 -0.35 1.97 16 45 H 0.34 2.47 8.97 -39.29 -0.35 2.12 16 46 H 0.07 0.81 7.11 -51.93 -0.37 0.44 16 47 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 48 H 0.07 0.70 7.80 -51.93 -0.40 0.29 16 49 H 0.01 0.16 7.54 -51.93 -0.39 -0.24 16 50 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 51 H 0.13 2.70 6.14 -52.48 -0.32 2.38 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -29.75 382.11 -11.26 -41.00 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.55 Total: 7.01 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.02 Total: -15.89 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.77 Total: -53.86 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.75 -11.26 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205117569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.398 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds